Rorug04G0225400

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0011556
Physical Location & Seq
Reverse (-)
38746918 .. 38754242
7325 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0225400.1

Sequence Viewer

Length: 1143 bp
ATGTCTTTTACACGTCACTTCCGCTCAGAAGGGGGCACTACTCGCGATGAGTATTGGCCGTCATTCAGTAGAAACAACTCCAAAAGCTTCAATAGCAATGCCAGACACAACAACAAGACCAACTACAATAACAATTGGAACATGAGCAGGAACAATAACTTTGTTAGGAATCATTACGATTTTCAGTATTACATGGGAAATTATAGGGAGCATGCCGATAATTCTAATCATTTTAAGCCTGACGGTGCACCATCCTATAAAAGGAGAAAATTTTCAGCTTCTACTTGGGGTGATGGTGGGAGACATTATCTGCCACCAAACACGTATGATTTCGCTCCTTCAACCTGCAATAATTATGTCCCTCCTACAAGATCCAACGGCATTGCCTCTGCATCTACCACCTGTAAACGTGACCGCTCAAAATTAGAAGAGGATGAAGTTGCCTTTATGTCAAGGGATGAGATTGAGAGATACTCCCCATCTAGGAAAGATGGTATAGATGCAGCACGTGAGGCACATTTGCGATACTCATATTGTTCGTACCTTCAGGATCTTGGTTTGCGGCTGGACTTGCCACAGACCACGATTGCTACTGCAATGGTTCTCTGCCACCGTTTTTTTGCTCGGCGATCACATGCTTGCCATGACAGATTTTTGATTGCCACTGCTGTTCTCTTTCTTGCTGCAAAGTCTGAGGAGACACCTCGCCCTTTGAATAACGTAGTGAGGGCATCTTGTGAGATTTTCCATAAGCAGGATATCAGTCTCTTGTCCTATATACTCCCTGTTGACTGGTTTGAGCAGTATCGGGAACGGGTGACTGAGGCTGAGCATATGATACTGGCTACTCTAAATTTTGAACTGAATGTGCAGCATCCATATGCTCCTCTTACCTCGATACTTGATAAATTAGGGCTCTCACAAACTGTTTTGGTGAATCTGGCCTTAAGCTTGGTCAGTGAAGGGCTTCGGAGTTCATTGTGGCTTCAGTTCAAACCGCATCATATTGCTGCTGGAGCTGCCTACCTTGCCGCGAAGTTTCTAAATTTGGATCTGAAACCTTATCAAAATATTTGGCAAGAGTTCCAGGCTACACCAGATGTCCTTCAAGATGTGTCCCAGCAGTTGATGGAACTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04391 map04391
Pfam Domains
Protein Families
DHHC

Protein Analysis

380

Amino Acids

43.94

Weight (kDa)

8.42

Isoelectric Point (pI)

58.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 148 - 289 5.1e-14 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 353
AccBSI CCGCTC 2 cut(s) 24, 417
AccII CGCG 2 cut(s) 45, 1034
AciI CCGC 5 cut(s) 22, 415, 562, 998, 1032
AclWI GGATC 3 cut(s) 366, 558, 1059
AcoI YGGCCR 1 cut(s) 56
AcsI RAATTY 3 cut(s) 269, 853, 1045
AcuI CTGAAG 2 cut(s) 530, 971
AcvI CACGTG 1 cut(s) 509
AfaI GTAC 1 cut(s) 542
AfiI CCNNNNNNNGG 3 cut(s) 261, 483, 754
AflII CTTAAG 1 cut(s) 946
AflIII ACRYGT 2 cut(s) 11, 321
AgsI TTSAA 6 cut(s) 91, 342, 715, 860, 994, 1109
AjiI CACGTC 1 cut(s) 14
AjnI CCWGG 1 cut(s) 1086
AluBI AGCT 4 cut(s) 87, 278, 951, 1019
AluI AGCT 4 cut(s) 87, 278, 951, 1019
Alw21I GWGCWC 1 cut(s) 250
Alw26I GTCTC 3 cut(s) 295, 692, 770
Alw44I GTGCAC 1 cut(s) 246
AlwI GGATC 3 cut(s) 366, 558, 1059
AoxI GGCC 2 cut(s) 56, 942
ApaLI GTGCAC 1 cut(s) 246
ApeKI GCWGC 5 cut(s) 503, 683, 871, 1010, 1019
ApoI RAATTY 3 cut(s) 269, 853, 1045
Asp700I GAANNNNTTC 2 cut(s) 271, 966
AsuHPI GGTGA 3 cut(s) 302, 829, 946
BaeGI GKGCMC 2 cut(s) 38, 250
BanII GRGCYC 1 cut(s) 918
BbrPI CACGTG 1 cut(s) 509
Bbv12I GWGCWC 1 cut(s) 250
BbvI GCAGC 5 cut(s) 515, 670, 883, 997, 1006
BccI CCATC 5 cut(s) 259, 287, 485, 487, 1123
BceAI ACGGC 2 cut(s) 43, 394
BciT130I CCWGG 1 cut(s) 1088
BcoDI GTCTC 3 cut(s) 295, 692, 770
BfaI CTAG 1 cut(s) 483
BfrI CTTAAG 1 cut(s) 946
BfuAI ACCTGC 1 cut(s) 353
BisI GCNGC 7 cut(s) 504, 563, 684, 872, 1011, 1020, 1032
BlpI GCTNAGC 1 cut(s) 828
BlsI GCNGC 7 cut(s) 505, 564, 685, 873, 1012, 1021, 1033
Bme1390I CCNGG 1 cut(s) 1088
BmgBI CACGTC 1 cut(s) 14
BmrFI CCNGG 1 cut(s) 1088
BmsI GCATC 5 cut(s) 401, 490, 740, 883, 1009
BplI GAGNNNNNCTC 2 cut(s) 458, 490
BpmI CTGGAG 1 cut(s) 1035
Bpu1102I GCTNAGC 1 cut(s) 828
BsaAI YACGTR 2 cut(s) 324, 509
Bsc4I CCNNNNNNNGG 3 cut(s) 261, 483, 754
Bse1I ACTGG 2 cut(s) 797, 846
Bse3DI GCAATG 3 cut(s) 103, 381, 603
BseBI CCWGG 1 cut(s) 1088
BseGI GGATG 4 cut(s) 251, 439, 463, 874
BseLI CCNNNNNNNGG 3 cut(s) 261, 483, 754
BseMI GCAATG 3 cut(s) 103, 381, 603
BseMII CTCAG 4 cut(s) 39, 684, 813, 819
BseNI ACTGG 2 cut(s) 797, 846
BseRI GAGGAG 2 cut(s) 710, 876
BseSI GKGCMC 2 cut(s) 38, 250
BseXI GCAGC 5 cut(s) 515, 670, 883, 997, 1006
BseYI CCCAGC 1 cut(s) 1119
BsgI GTGCAG 1 cut(s) 890
Bsh1236I CGCG 2 cut(s) 45, 1034
BshFI GGCC 2 cut(s) 58, 944
BsiHKAI GWGCWC 1 cut(s) 250
BslFI GGGAC 2 cut(s) 344, 1102
BslI CCNNNNNNNGG 3 cut(s) 261, 483, 754
BsmAI GTCTC 3 cut(s) 295, 692, 770
BsmFI GGGAC 2 cut(s) 344, 1102
BsnI GGCC 2 cut(s) 58, 944
Bsp1286I GDGCHC 3 cut(s) 38, 250, 918
Bsp143I GATC 4 cut(s) 371, 550, 629, 1051
Bsp1720I GCTNAGC 1 cut(s) 828
Bsp68I TCGCGA 1 cut(s) 45
BspACI CCGC 5 cut(s) 22, 415, 562, 998, 1032
BspANI GGCC 2 cut(s) 58, 944
BspCNI CTCAG 4 cut(s) 38, 685, 814, 820
BspFNI CGCG 2 cut(s) 45, 1034
BspMI ACCTGC 1 cut(s) 353
BspPI GGATC 3 cut(s) 366, 558, 1059
BspTI CTTAAG 1 cut(s) 946
BsrBI CCGCTC 2 cut(s) 24, 417
BsrDI GCAATG 3 cut(s) 103, 381, 603
BsrI ACTGG 2 cut(s) 797, 846
BssMI GATC 4 cut(s) 371, 550, 629, 1051
Bst2UI CCWGG 1 cut(s) 1088
Bst4CI ACNGT 3 cut(s) 245, 614, 928
Bst6I CTCTTC 1 cut(s) 423
BstAFI CTTAAG 1 cut(s) 946
BstBAI YACGTR 2 cut(s) 324, 509
BstC8I GCNNGC 2 cut(s) 213, 640
BstDEI CTNAG 4 cut(s) 25, 693, 822, 828
BstENI CCTNNNNNAGG 1 cut(s) 259
BstF5I GGATG 4 cut(s) 251, 439, 463, 874
BstFNI CGCG 2 cut(s) 45, 1034
BstKTI GATC 4 cut(s) 374, 553, 632, 1054
BstMAI GTCTC 3 cut(s) 295, 692, 770
BstMBI GATC 4 cut(s) 371, 550, 629, 1051
BstMWI GCNNNNNNNGC 7 cut(s) 42, 93, 512, 571, 1016, 1019, 1028
BstNI CCWGG 1 cut(s) 1088
BstNSI RCATGY 2 cut(s) 215, 638
BstSCI CCNGG 1 cut(s) 1086
BstSLI GKGCMC 2 cut(s) 38, 250
BstUI CGCG 2 cut(s) 45, 1034
BstV1I GCAGC 5 cut(s) 515, 670, 883, 997, 1006
BstX2I RGATCY 3 cut(s) 371, 550, 1051
BstYI RGATCY 3 cut(s) 371, 550, 1051
BsuRI GGCC 2 cut(s) 58, 944
BtgZI GCGATG 1 cut(s) 60
BtrI CACGTC 1 cut(s) 14
BtsCI GGATG 4 cut(s) 251, 439, 463, 874
BtsI GCAGTG 1 cut(s) 663
BtsIMutI CAGTG 2 cut(s) 663, 964
BtuMI TCGCGA 1 cut(s) 45
BveI ACCTGC 1 cut(s) 353
Cac8I GCNNGC 2 cut(s) 213, 640
Csp6I GTAC 1 cut(s) 541
CviAII CATG 5 cut(s) 142, 193, 212, 635, 644
CviQI GTAC 1 cut(s) 541
DdeI CTNAG 4 cut(s) 25, 693, 822, 828
DpnI GATC 4 cut(s) 373, 552, 631, 1053
DpnII GATC 4 cut(s) 371, 550, 629, 1051
EaeI YGGCCR 1 cut(s) 56
Eam1104I CTCTTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 423
Eco24I GRGCYC 1 cut(s) 918
Eco32I GATATC 1 cut(s) 760
Eco57I CTGAAG 2 cut(s) 530, 971
Eco72I CACGTG 1 cut(s) 509
EcoNI CCTNNNNNAGG 1 cut(s) 259
EcoRII CCWGG 1 cut(s) 1086
EcoRV GATATC 1 cut(s) 760
EcoT38I GRGCYC 1 cut(s) 918
FaeI CATG 5 cut(s) 145, 196, 215, 638, 647
FaqI GGGAC 2 cut(s) 344, 1102
FatI CATG 5 cut(s) 141, 192, 211, 634, 643
FauNDI CATATG 2 cut(s) 834, 880
Fnu4HI GCNGC 7 cut(s) 504, 563, 684, 872, 1011, 1020, 1032
FokI GGATG 4 cut(s) 238, 446, 470, 861
FriOI GRGCYC 1 cut(s) 918
Fsp4HI GCNGC 7 cut(s) 504, 563, 684, 872, 1011, 1020, 1032
FspBI CTAG 1 cut(s) 483
GluI GCNGC 7 cut(s) 504, 563, 684, 872, 1011, 1020, 1032
GsaI CCCAGC 1 cut(s) 1123
GsuI CTGGAG 1 cut(s) 1035
HaeIII GGCC 2 cut(s) 58, 944
Hin1II CATG 5 cut(s) 145, 196, 215, 638, 647
HincII GTYRAC 1 cut(s) 790
HindII GTYRAC 1 cut(s) 790
HindIII AAGCTT 2 cut(s) 85, 949
HinfI GANTC 2 cut(s) 169, 937
HphI GGTGA 3 cut(s) 302, 829, 946
Hpy166II GTNNAC 3 cut(s) 248, 407, 790
Hpy188I TCNGA 4 cut(s) 28, 694, 972, 1056
Hpy188III TCNNGA 4 cut(s) 44, 548, 809, 1109
Hpy8I GTNNAC 3 cut(s) 248, 407, 790
HpyAV CCTTC 5 cut(s) 23, 348, 554, 956, 1115
HpyCH4III ACNGT 3 cut(s) 245, 614, 928
HpyCH4IV ACGT 5 cut(s) 13, 323, 409, 508, 720
HpyCH4V TGCA 7 cut(s) 248, 348, 392, 503, 596, 686, 871
HpyF10VI GCNNNNNNNGC 7 cut(s) 42, 93, 512, 571, 1016, 1019, 1028
HpyF3I CTNAG 4 cut(s) 25, 693, 822, 828
HpySE526I ACGT 5 cut(s) 13, 323, 409, 508, 720
Hsp92II CATG 5 cut(s) 145, 196, 215, 638, 647
Kzo9I GATC 4 cut(s) 371, 550, 629, 1051
LmnI GCTCC 4 cut(s) 208, 340, 889, 1016
Lsp1109I GCAGC 5 cut(s) 515, 670, 883, 997, 1006
LweI GCATC 5 cut(s) 401, 490, 740, 883, 1009
MaeI CTAG 1 cut(s) 483
MaeII ACGT 5 cut(s) 13, 323, 409, 508, 720
MaeIII GTNAC 3 cut(s) 14, 410, 817
MalI GATC 4 cut(s) 373, 552, 631, 1053
MbiI CCGCTC 2 cut(s) 24, 417
MboI GATC 4 cut(s) 371, 550, 629, 1051
MboII GAAGA 2 cut(s) 440, 1129
MfeI CAATTG 1 cut(s) 133
MflI RGATCY 3 cut(s) 371, 550, 1051
MhlI GDGCHC 3 cut(s) 38, 250, 918
MluCI AATT 9 cut(s) 133, 199, 220, 269, 352, 422, 853, 908, 1045
MmeI TCCRAC 1 cut(s) 399
MroXI GAANNNNTTC 2 cut(s) 271, 966
MseI TTAA 2 cut(s) 234, 947
MslI CAYNNNNRTG 1 cut(s) 879
MspCI CTTAAG 1 cut(s) 946
MspR9I CCNGG 1 cut(s) 1088
MunI CAATTG 1 cut(s) 133
MvaI CCWGG 1 cut(s) 1088
MvnI CGCG 2 cut(s) 45, 1034
MwoI GCNNNNNNNGC 7 cut(s) 42, 93, 512, 571, 1016, 1019, 1028
NdeI CATATG 2 cut(s) 834, 880
NdeII GATC 4 cut(s) 371, 550, 629, 1051
NlaIII CATG 5 cut(s) 145, 196, 215, 638, 647
NmeAIII GCCGAG 1 cut(s) 604
NmuCI GTSAC 3 cut(s) 14, 410, 817
NruI TCGCGA 1 cut(s) 45
NspI RCATGY 2 cut(s) 215, 638
PaeI GCATGC 1 cut(s) 215
PdmI GAANNNNTTC 2 cut(s) 271, 966
PfeI GAWTC 2 cut(s) 169, 937
PkrI GCNGC 7 cut(s) 505, 564, 685, 873, 1012, 1021, 1033
PmaCI CACGTG 1 cut(s) 509
PmlI CACGTG 1 cut(s) 509
Ppu21I YACGTR 2 cut(s) 324, 509
Psp6I CCWGG 1 cut(s) 1086
PspCI CACGTG 1 cut(s) 509
PspFI CCCAGC 1 cut(s) 1119
PspGI CCWGG 1 cut(s) 1086
PsuI RGATCY 3 cut(s) 371, 550, 1051
RruI TCGCGA 1 cut(s) 45
RsaI GTAC 1 cut(s) 542
RsaNI GTAC 1 cut(s) 541
RseI CAYNNNNRTG 1 cut(s) 879
SaqAI TTAA 2 cut(s) 234, 947
SatI GCNGC 7 cut(s) 504, 563, 684, 872, 1011, 1020, 1032
Sau3AI GATC 4 cut(s) 371, 550, 629, 1051
ScrFI CCNGG 1 cut(s) 1088
SduI GDGCHC 3 cut(s) 38, 250, 918
SfaNI GCATC 5 cut(s) 401, 490, 740, 883, 1009
SmiMI CAYNNNNRTG 1 cut(s) 879
SmlI CTYRAG 1 cut(s) 946
SmoI CTYRAG 1 cut(s) 946
SphI GCATGC 1 cut(s) 215
Sse9I AATT 9 cut(s) 133, 199, 220, 269, 352, 422, 853, 908, 1045
SsiI CCGC 5 cut(s) 22, 415, 562, 998, 1032
SspI AATATT 1 cut(s) 1072
SspMI CTAG 1 cut(s) 483
StyD4I CCNGG 1 cut(s) 1086
TaaI ACNGT 3 cut(s) 245, 614, 928
TaiI ACGT 5 cut(s) 16, 326, 412, 511, 723
TaqI TCGA 1 cut(s) 896
TasI AATT 9 cut(s) 133, 199, 220, 269, 352, 422, 853, 908, 1045
TauI GCSGC 2 cut(s) 565, 1034
TfiI GAWTC 2 cut(s) 169, 937
Tru1I TTAA 2 cut(s) 234, 947
Tru9I TTAA 2 cut(s) 234, 947
TscAI CASTG 2 cut(s) 670, 964
TseFI GTSAC 3 cut(s) 14, 410, 817
TseI GCWGC 5 cut(s) 503, 683, 871, 1010, 1019
Tsp45I GTSAC 3 cut(s) 14, 410, 817
TspDTI ATGAA 2 cut(s) 450, 966
TspRI CASTG 2 cut(s) 670, 964
Vha464I CTTAAG 1 cut(s) 946
VneI GTGCAC 1 cut(s) 246
XagI CCTNNNNNAGG 1 cut(s) 259
XapI RAATTY 3 cut(s) 269, 853, 1045
XceI RCATGY 2 cut(s) 215, 638
XmnI GAANNNNTTC 2 cut(s) 271, 966
XspI CTAG 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.