Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006844.1

Orthogroup ID

OG0011556

Physical Location & Seq

Genomic Coordinates Forward (+)

25142 .. 27600

Gene Structure 2459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006844.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

atgagaaaagacgacgacttggtcagaacgcgggaaggaatgcacggcagttctatgcatgatcagcattccaactccgaccgccggattatggacccccctggcccctccctcagagtatttcaagtttggaaaggaaacaataaattttgcttcagtggcagactgatatttggtccggatgccaagtcattgattcttactgtgtcgctgattgtggttccggtgatcttgttttgtgcttttgtttctagaggactagttcgtattttcccctaccatattggcaattttatcgtggctttagctgtcgtatctacagtctgtgttgttagtcttctcttgattacagcttcaagagatcctggcattattcctcgaagcctgcatcctcctgaaccagaagatgatggttatatgtctagtatgtcatctgagtggccaggaagtcagaatggaccaccaactgtaccacccacaaaagatataatggttaatggctcaattgtcaaggtcaaatactgccatacatgcatgctatatcgtccgccccgatgctcacactgctctatatgcaacaattgtgtggagcgttttgatcaccattgcccatgggtggggcaatgtattgggagaaggaattaccgattctttttcctgtttgtgtcctccacagccatgctgtgcctctatgtctttgccttctcctgggtaaacatcatgaaaataatggatgcttaccattatgatctctggagagctttattgaagtcacctgtttcaggaattctaattctatatacatttggagctgcttggtttgttggaggtctcagtagcttccatctatatttaatctgcaccaatcagacaacttatgagaacttccggtatcgctacactatcaagatgaacccgcacaatcgtgggtgttttgaaaatatcgcggaagttttctgctctagaattcctccatctaaacataacttcagggaaaaggttaagggcgagtcgtcttctgtctataccaattcaacaatttcattaggtcatcctatgagcccagagatgcccaaaccaagatatgacatagagatgggaaaacgccaagctgtggctgctgaagatcttgaggatctacagagtcagattgatagtgttgttggtatggataggttggagaggtgtgggactcagccgaggcattcaaactgggatcagaaagccaactggccatccacacctgatatacaaatcttggctgctgagttcggaatggaagatggttcaacaacaggcagacagaagattgaagggcctagtgacctaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04391 map04391

Pfam Domains

Protein Families

DHHC

Protein Analysis

444

Amino Acids

50.28

Weight (kDa)

8.52

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011556)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22230
malus_domestica	MD13G1133700.v1.1 MD16G1144100.v1.1
prunus_persica	Prupe.1G212000_v2.0.a1 Prupe.1G212000_v2.0.a1
pyrus_communis	pycom13g11650 pycom16g11350
rosa_chinensis	RchiOBHm_Chr4g0428471
rosa_laevigata	RLG00000007147
rosa_multiflora	Rmu_sc0006844.1_g000007 Rmu_sc0010735.1_g000007
rosa_roxburghii	Rroxscaffold_5G00370140
rosa_rugosa	Rorug04G0225400 Rorug04G0225400 Rorug04G0225400
rosa_samantha	Rh4AG283000 Rh4BG288700 Rh4CG304300 Rh4DG285800
rosa_wichuraiana	Rw4G024570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	20
AccB7I	CCANNNNNTGG	1 cut(s)	1114
AccII	CGCG	2 cut(s)	31, 947
AccIII	TCCGGA	1 cut(s)	178
AciI	CCGC	5 cut(s)	31, 82, 548, 917, 947
AclWI	GGATC	3 cut(s)	356, 1143, 1224
AcoI	YGGCCR	2 cut(s)	440, 1232
AcsI	RAATTY	3 cut(s)	146, 786, 966
AcuI	CTGAAG	3 cut(s)	139, 973, 1143
AfaI	GTAC	1 cut(s)	471
AfiI	CCNNNNNNNGG	7 cut(s)	84, 91, 616, 617, 708, 782, 1114
AgsI	TTSAA	8 cut(s)	125, 357, 769, 938, 1035, 1209, 1290, 1313
AhlI	ACTAGT	1 cut(s)	259
AjnI	CCWGG	4 cut(s)	100, 364, 442, 707
AleI	CACNNNNGTG	1 cut(s)	924
AluBI	AGCT	6 cut(s)	308, 353, 761, 812, 840, 1112
AluI	AGCT	6 cut(s)	308, 353, 761, 812, 840, 1112
Alw26I	GTCTC	1 cut(s)	836
AlwI	GGATC	3 cut(s)	356, 1143, 1224
Aor13HI	TCCGGA	1 cut(s)	178
AoxI	GGCC	4 cut(s)	103, 440, 1232, 1316
ApeKI	GCWGC	3 cut(s)	812, 1118, 1262
ApoI	RAATTY	3 cut(s)	146, 786, 966
AspS9I	GGNCC	5 cut(s)	94, 104, 176, 458, 1316
AsuHPI	GGTGA	3 cut(s)	238, 593, 765
AvaII	GGWCC	3 cut(s)	94, 176, 458
BalI	TGGCCA	2 cut(s)	442, 1234
BanII	GRGCYC	1 cut(s)	1064
BbsI	GAAGAC	2 cut(s)	329, 1008
BbvI	GCAGC	3 cut(s)	799, 1105, 1249
BccI	CCATC	6 cut(s)	404, 852, 982, 1090, 1243, 1277
BceAI	ACGGC	1 cut(s)	61
BcgI	CGANNNNNNTGC	2 cut(s)	277, 311
BciT130I	CCWGG	4 cut(s)	102, 366, 444, 709
BclI	TGATCA	2 cut(s)	61, 598
BcoDI	GTCTC	1 cut(s)	836
BcuI	ACTAGT	1 cut(s)	259
BfaI	CTAG	5 cut(s)	252, 260, 423, 963, 1320
BfmI	CTRYAG	2 cut(s)	318, 1139
BglII	AGATCT	1 cut(s)	1126
BisI	GCNGC	3 cut(s)	813, 1119, 1263
BlsI	GCNGC	3 cut(s)	814, 1120, 1264
Bme1390I	CCNGG	4 cut(s)	102, 366, 444, 709
Bme18I	GGWCC	3 cut(s)	94, 176, 458
BmgT120I	GGNCC	5 cut(s)	94, 104, 176, 458, 1316
BmiI	GGNNCC	3 cut(s)	96, 106, 222
BmrFI	CCNGG	4 cut(s)	102, 366, 444, 709
BmrI	ACTGGG	1 cut(s)	1222
BmsI	GCATC	5 cut(s)	172, 397, 545, 724, 1059
BmuI	ACTGGG	1 cut(s)	1222
BpiI	GAAGAC	2 cut(s)	329, 1008
BpmI	CTGGAG	1 cut(s)	775
BpuEI	CTTGAG	1 cut(s)	1151
BsaI	GGTCTC	1 cut(s)	836
BsaJI	CCNNGG	4 cut(s)	100, 611, 708, 1199
BsaWI	WCCGGW	3 cut(s)	178, 223, 888
Bsc4I	CCNNNNNNNGG	7 cut(s)	84, 91, 616, 617, 708, 782, 1114
Bse1I	ACTGG	2 cut(s)	1217, 1235
Bse3DI	GCAATG	2 cut(s)	604, 629
BseAI	TCCGGA	1 cut(s)	178
BseBI	CCWGG	4 cut(s)	102, 366, 444, 709
BseDI	CCNNGG	4 cut(s)	100, 611, 708, 1199
BseGI	GGATG	5 cut(s)	187, 388, 739, 1051, 1235
BseLI	CCNNNNNNNGG	7 cut(s)	84, 91, 616, 617, 708, 782, 1114
BseMI	GCAATG	2 cut(s)	604, 629
BseMII	CTCAG	5 cut(s)	127, 426, 847, 1208, 1257
BseNI	ACTGG	2 cut(s)	1217, 1235
BseXI	GCAGC	3 cut(s)	799, 1105, 1249
BsgI	GTGCAG	1 cut(s)	844
Bsh1236I	CGCG	2 cut(s)	31, 947
Bsh1285I	CGRYCG	1 cut(s)	82
BshFI	GGCC	4 cut(s)	105, 442, 1234, 1318
BsiEI	CGRYCG	1 cut(s)	82
BsiSI	CCGG	4 cut(s)	85, 179, 224, 889
BslFI	GGGAC	1 cut(s)	1204
BslI	CCNNNNNNNGG	7 cut(s)	84, 91, 616, 617, 708, 782, 1114
BsmAI	GTCTC	1 cut(s)	836
BsmFI	GGGAC	1 cut(s)	1204
BsmI	GAATGC	3 cut(s)	45, 67, 1204
BsnI	GGCC	4 cut(s)	105, 442, 1234, 1318
Bso31I	GGTCTC	1 cut(s)	836
Bsp1286I	GDGCHC	1 cut(s)	1064
Bsp13I	TCCGGA	1 cut(s)	178
Bsp143I	GATC	8 cut(s)	61, 228, 361, 598, 748, 1126, 1135, 1216
Bsp19I	CCATGG	1 cut(s)	611
BspACI	CCGC	5 cut(s)	31, 82, 548, 917, 947
BspANI	GGCC	4 cut(s)	105, 442, 1234, 1318
BspCNI	CTCAG	5 cut(s)	126, 427, 846, 1207, 1258
BspEI	TCCGGA	1 cut(s)	178
BspFNI	CGCG	2 cut(s)	31, 947
BspHI	TCATGA	1 cut(s)	720
BspLI	GGNNCC	3 cut(s)	96, 106, 222
BspPI	GGATC	3 cut(s)	356, 1143, 1224
BspTNI	GGTCTC	1 cut(s)	836
BsrDI	GCAATG	2 cut(s)	604, 629
BsrI	ACTGG	2 cut(s)	1217, 1235
BssECI	CCNNGG	4 cut(s)	100, 611, 708, 1199
BssMI	GATC	8 cut(s)	61, 228, 361, 598, 748, 1126, 1135, 1216
BssT1I	CCWWGG	1 cut(s)	611
Bst2UI	CCWGG	4 cut(s)	102, 366, 444, 709
Bst4CI	ACNGT	3 cut(s)	205, 322, 469
BstC8I	GCNNGC	2 cut(s)	386, 536
BstDEI	CTNAG	5 cut(s)	113, 435, 833, 1194, 1266
BstDSI	CCRYGG	1 cut(s)	611
BstENI	CCTNNNNNAGG	1 cut(s)	780
BstF5I	GGATG	5 cut(s)	187, 388, 739, 1051, 1235
BstFNI	CGCG	2 cut(s)	31, 947
BstKTI	GATC	8 cut(s)	64, 231, 364, 601, 751, 1129, 1138, 1219
BstMAI	GTCTC	1 cut(s)	836
BstMBI	GATC	8 cut(s)	61, 228, 361, 598, 748, 1126, 1135, 1216
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	6 cut(s)	64, 159, 531, 564, 573, 1118
BstNI	CCWGG	4 cut(s)	102, 366, 444, 709
BstNSI	RCATGY	2 cut(s)	534, 538
BstSCI	CCNGG	4 cut(s)	100, 364, 442, 707
BstSFI	CTRYAG	2 cut(s)	318, 1139
BstUI	CGCG	2 cut(s)	31, 947
BstV1I	GCAGC	3 cut(s)	799, 1105, 1249
BstV2I	GAAGAC	2 cut(s)	329, 1008
BstX2I	RGATCY	3 cut(s)	361, 1126, 1135
BstYI	RGATCY	3 cut(s)	361, 1126, 1135
BsuRI	GGCC	4 cut(s)	105, 442, 1234, 1318
BtgI	CCRYGG	1 cut(s)	611
BtsCI	GGATG	5 cut(s)	187, 388, 739, 1051, 1235
BtsI	GCAGTG	1 cut(s)	562
BtsIMutI	CAGTG	2 cut(s)	163, 562
Cac8I	GCNNGC	2 cut(s)	386, 536
CciI	TCATGA	1 cut(s)	720
Cfr13I	GGNCC	5 cut(s)	94, 104, 176, 458, 1316
Csp6I	GTAC	1 cut(s)	470
CviAII	CATG	6 cut(s)	59, 531, 535, 612, 679, 721
CviQI	GTAC	1 cut(s)	470
DdeI	CTNAG	5 cut(s)	113, 435, 833, 1194, 1266
DpnI	GATC	8 cut(s)	63, 230, 363, 600, 750, 1128, 1137, 1218
DpnII	GATC	8 cut(s)	61, 228, 361, 598, 748, 1126, 1135, 1216
DrdI	GACNNNNNNGTC	1 cut(s)	20
DseDI	GACNNNNNNGTC	1 cut(s)	20
EaeI	YGGCCR	2 cut(s)	440, 1232
EciI	GGCGGA	1 cut(s)	537
Eco130I	CCWWGG	1 cut(s)	611
Eco24I	GRGCYC	1 cut(s)	1064
Eco31I	GGTCTC	1 cut(s)	836
Eco47I	GGWCC	3 cut(s)	94, 176, 458
Eco57I	CTGAAG	3 cut(s)	139, 973, 1143
EcoNI	CCTNNNNNAGG	1 cut(s)	780
EcoO109I	RGGNCCY	1 cut(s)	1316
EcoRI	GAATTC	2 cut(s)	786, 966
EcoRII	CCWGG	4 cut(s)	100, 364, 442, 707
EcoT14I	CCWWGG	1 cut(s)	611
EcoT22I	ATGCAT	2 cut(s)	60, 536
EcoT38I	GRGCYC	1 cut(s)	1064
ErhI	CCWWGG	1 cut(s)	611
FaeI	CATG	6 cut(s)	62, 534, 538, 615, 682, 724
FaqI	GGGAC	1 cut(s)	1204
FatI	CATG	6 cut(s)	58, 530, 534, 611, 678, 720
FauI	CCCGC	2 cut(s)	24, 924
FbaI	TGATCA	2 cut(s)	61, 598
Fnu4HI	GCNGC	3 cut(s)	813, 1119, 1263
FokI	GGATG	5 cut(s)	194, 375, 746, 1038, 1222
FriOI	GRGCYC	1 cut(s)	1064
Fsp4HI	GCNGC	3 cut(s)	813, 1119, 1263
FspBI	CTAG	5 cut(s)	252, 260, 423, 963, 1320
GluI	GCNGC	3 cut(s)	813, 1119, 1263
GsuI	CTGGAG	1 cut(s)	775
HaeIII	GGCC	4 cut(s)	105, 442, 1234, 1318
HapII	CCGG	4 cut(s)	85, 179, 224, 889
Hin1II	CATG	6 cut(s)	62, 534, 538, 615, 682, 724
HinfI	GANTC	5 cut(s)	196, 648, 1010, 1144, 1192
HpaII	CCGG	4 cut(s)	85, 179, 224, 889
HphI	GGTGA	3 cut(s)	238, 593, 765
Hpy166II	GTNNAC	1 cut(s)	715
Hpy188I	TCNGA	9 cut(s)	26, 79, 116, 436, 453, 870, 1149, 1221, 1274
Hpy8I	GTNNAC	1 cut(s)	715
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	4 cut(s)	29, 630, 712, 1307
HpyCH4III	ACNGT	3 cut(s)	205, 322, 469
HpyCH4V	TGCA	6 cut(s)	43, 58, 388, 534, 576, 861
HpyF10VI	GCNNNNNNNGC	6 cut(s)	64, 159, 531, 564, 573, 1118
HpyF3I	CTNAG	5 cut(s)	113, 435, 833, 1194, 1266
Hsp92II	CATG	6 cut(s)	62, 534, 538, 615, 682, 724
Kpn2I	TCCGGA	1 cut(s)	178
Ksp22I	TGATCA	2 cut(s)	61, 598
Kzo9I	GATC	8 cut(s)	61, 228, 361, 598, 748, 1126, 1135, 1216
LmnI	GCTCC	2 cut(s)	589, 809
Lsp1109I	GCAGC	3 cut(s)	799, 1105, 1249
LweI	GCATC	5 cut(s)	172, 397, 545, 724, 1059
MaeI	CTAG	5 cut(s)	252, 260, 423, 963, 1320
MaeIII	GTNAC	2 cut(s)	771, 1322
MalI	GATC	8 cut(s)	63, 230, 363, 600, 750, 1128, 1137, 1218
MboI	GATC	8 cut(s)	61, 228, 361, 598, 748, 1126, 1135, 1216
MboII	GAAGA	6 cut(s)	329, 416, 1008, 1136, 1292, 1318
MfeI	CAATTG	2 cut(s)	504, 580
MflI	RGATCY	3 cut(s)	361, 1126, 1135
MhlI	GDGCHC	1 cut(s)	1064
MlsI	TGGCCA	2 cut(s)	442, 1234
MluNI	TGGCCA	2 cut(s)	442, 1234
MlyI	GAGTC	3 cut(s)	1019, 1153, 1186
MmeI	TCCRAC	4 cut(s)	96, 102, 805, 1158
Mox20I	TGGCCA	2 cut(s)	442, 1234
Mph1103I	ATGCAT	2 cut(s)	60, 536
MroI	TCCGGA	1 cut(s)	178
MscI	TGGCCA	2 cut(s)	442, 1234
MseI	TTAA	3 cut(s)	495, 854, 1002
MslI	CAYNNNNRTG	4 cut(s)	436, 677, 924, 1094
Msp20I	TGGCCA	2 cut(s)	442, 1234
MspI	CCGG	4 cut(s)	85, 179, 224, 889
MspR9I	CCNGG	4 cut(s)	102, 366, 444, 709
MunI	CAATTG	2 cut(s)	504, 580
Mva1269I	GAATGC	3 cut(s)	45, 67, 1204
MvaI	CCWGG	4 cut(s)	102, 366, 444, 709
MvnI	CGCG	2 cut(s)	31, 947
MwoI	GCNNNNNNNGC	6 cut(s)	64, 159, 531, 564, 573, 1118
NcoI	CCATGG	1 cut(s)	611
NdeII	GATC	8 cut(s)	61, 228, 361, 598, 748, 1126, 1135, 1216
NlaIII	CATG	6 cut(s)	62, 534, 538, 615, 682, 724
NlaIV	GGNNCC	3 cut(s)	96, 106, 222
NmeAIII	GCCGAG	1 cut(s)	1224
NmuCI	GTSAC	2 cut(s)	771, 1322
NsiI	ATGCAT	2 cut(s)	60, 536
NspI	RCATGY	2 cut(s)	534, 538
OliI	CACNNNNGTG	1 cut(s)	924
PaeI	GCATGC	1 cut(s)	538
PagI	TCATGA	1 cut(s)	720
PcsI	WCGNNNNNNNCGW	1 cut(s)	550
PctI	GAATGC	3 cut(s)	45, 67, 1204
PfeI	GAWTC	2 cut(s)	196, 648
PflFI	GACNNNGTC	1 cut(s)	20
PflMI	CCANNNNNTGG	1 cut(s)	1114
PkrI	GCNGC	3 cut(s)	814, 1120, 1264
PleI	GAGTC	3 cut(s)	1018, 1152, 1186
PpsI	GAGTC	3 cut(s)	1018, 1152, 1186
Psp6I	CCWGG	4 cut(s)	100, 364, 442, 707
PspGI	CCWGG	4 cut(s)	100, 364, 442, 707
PspN4I	GGNNCC	3 cut(s)	96, 106, 222
PspPI	GGNCC	5 cut(s)	94, 104, 176, 458, 1316
PsuI	RGATCY	3 cut(s)	361, 1126, 1135
PsyI	GACNNNGTC	1 cut(s)	20
RsaI	GTAC	1 cut(s)	471
RsaNI	GTAC	1 cut(s)	470
RseI	CAYNNNNRTG	4 cut(s)	436, 677, 924, 1094
SaqAI	TTAA	3 cut(s)	495, 854, 1002
SatI	GCNGC	3 cut(s)	813, 1119, 1263
Sau3AI	GATC	8 cut(s)	61, 228, 361, 598, 748, 1126, 1135, 1216
Sau96I	GGNCC	5 cut(s)	94, 104, 176, 458, 1316
SchI	GAGTC	3 cut(s)	1019, 1153, 1186
ScrFI	CCNGG	4 cut(s)	102, 366, 444, 709
SduI	GDGCHC	1 cut(s)	1064
SfaNI	GCATC	5 cut(s)	172, 397, 545, 724, 1059
SfcI	CTRYAG	2 cut(s)	318, 1139
SinI	GGWCC	3 cut(s)	94, 176, 458
SmiMI	CAYNNNNRTG	4 cut(s)	436, 677, 924, 1094
SmlI	CTYRAG	1 cut(s)	1130
SmoI	CTYRAG	1 cut(s)	1130
SpeI	ACTAGT	1 cut(s)	259
SphI	GCATGC	1 cut(s)	538
SsiI	CCGC	5 cut(s)	31, 82, 548, 917, 947
SspMI	CTAG	5 cut(s)	252, 260, 423, 963, 1320
StyD4I	CCNGG	4 cut(s)	100, 364, 442, 707
StyI	CCWWGG	1 cut(s)	611
TaaI	ACNGT	3 cut(s)	205, 322, 469
TaqI	TCGA	1 cut(s)	379
TfiI	GAWTC	2 cut(s)	196, 648
Tru1I	TTAA	3 cut(s)	495, 854, 1002
Tru9I	TTAA	3 cut(s)	495, 854, 1002
TscAI	CASTG	2 cut(s)	163, 569
TseFI	GTSAC	2 cut(s)	771, 1322
TseI	GCWGC	3 cut(s)	812, 1118, 1262
Tsp45I	GTSAC	2 cut(s)	771, 1322
TspDTI	ATGAA	3 cut(s)	737, 926, 1032
TspRI	CASTG	2 cut(s)	163, 569
Tth111I	GACNNNGTC	1 cut(s)	20
Van91I	CCANNNNNTGG	1 cut(s)	1114
VpaK11BI	GGWCC	3 cut(s)	94, 176, 458
XagI	CCTNNNNNAGG	1 cut(s)	780
XapI	RAATTY	3 cut(s)	146, 786, 966
XbaI	TCTAGA	2 cut(s)	251, 962
XceI	RCATGY	2 cut(s)	534, 538
XspI	CTAG	5 cut(s)	252, 260, 423, 963, 1320
Zsp2I	ATGCAT	2 cut(s)	60, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.