Rroxscaffold_5G00370140

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0011556
Physical Location & Seq
Forward (+)
51818965 .. 51822178
3214 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00370140.1

Sequence Viewer

Length: 1146 bp
ATGAGAAAAGACGACTACTTGAAATTTTGCTTCAATGGCAGACTGATATTTGGTCCGGATGCCAAGTCATTGATTCTTACTGTGTCGCTGATTGTGGTTCCGGTGATCTTGTTTTGTGCTTTTGTTTCTAGAGGACTAGTTCGTATTTTCCCCTACCATATTGGCAATTTTATCGTGGCTTTAGCTGTCGTATCTACAGTCTGTGTGAGTTCTTTACATGACTGCTTTACCGATTCCCATCTAATGTATGATAGATACCTGGTTGTTAGTCTTCTCTTGATTACAGCTTCAAGAGATCCTGGCATTATTCCTCGAAGCCTGCATCCTCCTGAACCAGAAGATGATGGTTATATGTCTAGTATGTCATCTGAGTGGCCAGGAAGTCAGAATGGACCACCAACTGTACCACCCACAAAAGATATAATGGTTAATGGCTCAATTGTCAAGAGGAATTACCGATTCTTTTTCCTGTTTGTGTCCTCCACAGCCATGCTGTGCCTCTATGTCTTTGCCTTCTCCTGGGTAAACGTCATGAAAATAATGGATGCTTACCATTATGATCTCTGGAGAGCTTTATTGAAGTCACCTGTTTCAGGAATTCTAATTCTATATACATTTGGAGCTGCTTGGTTTGTTGGAGGTCTCAGTAGCTTCCATCTATATTTAATCTGCACCAATCAGACAACTTATGAGAACTTCCGGTATCGCTACACTATCAAGATGAACCCGCACAATCGTGGGTGTTTTGAAAATATTGCGGAAGTTTTCTGCTCTAGAATTCCTCCATCTAAACATAACTTCAGGGAAAAGGTTAAGGGCGAGTCGTCTTCTGTCTATACCAATTCAACAATTTCATTAGGTCATCCTATGAGCCCAGAGATGCCCAAACCAAGATATGACACAGATATGGGAAAACGCCAAGCTGTGGCTGCTGAAGATCTTGAGGATCTACAGAGTCAGATTGATAGTGTTGTTGGTATGGATAGGTTGGAGAGGTGTGGGACTCAGCCGAGGCATTCAAACTGGGATCAGAAAGCCAACTGGCCATCCACACCTGATATACAAATCTTGGCTGCTGAATTCGGAATGGAAGATGGTTCAACAACAGGCAGACAGAAGATTGAAGGGCCTAGTGACCTAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04391 map04391
Pfam Domains
Protein Families
DHHC

Protein Analysis

381

Amino Acids

43.06

Weight (kDa)

7.12

Isoelectric Point (pI)

42.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 142 - 234 6e-12 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 925
AccIII TCCGGA 1 cut(s) 55
AciI CCGC 2 cut(s) 728, 758
AclWI GGATC 3 cut(s) 290, 954, 1035
AcoI YGGCCR 2 cut(s) 374, 1043
AcsI RAATTY 4 cut(s) 23, 597, 777, 1079
AcuI CTGAAG 2 cut(s) 784, 954
AfaI GTAC 1 cut(s) 405
AfiI CCNNNNNNNGG 3 cut(s) 519, 593, 925
AgsI TTSAA 9 cut(s) 22, 34, 291, 580, 749, 846, 1020, 1101, 1124
AhlI ACTAGT 1 cut(s) 136
AjnI CCWGG 4 cut(s) 258, 298, 376, 518
AleI CACNNNNGTG 1 cut(s) 735
AluBI AGCT 6 cut(s) 185, 287, 572, 623, 651, 923
AluI AGCT 6 cut(s) 185, 287, 572, 623, 651, 923
Alw26I GTCTC 1 cut(s) 647
AlwI GGATC 3 cut(s) 290, 954, 1035
Aor13HI TCCGGA 1 cut(s) 55
AoxI GGCC 3 cut(s) 374, 1043, 1127
ApeKI GCWGC 3 cut(s) 623, 929, 1073
ApoI RAATTY 4 cut(s) 23, 597, 777, 1079
AspS9I GGNCC 3 cut(s) 53, 392, 1127
AsuHPI GGTGA 2 cut(s) 115, 576
AvaII GGWCC 2 cut(s) 53, 392
BalI TGGCCA 2 cut(s) 376, 1045
BanII GRGCYC 1 cut(s) 875
BbsI GAAGAC 2 cut(s) 263, 819
BbvI GCAGC 3 cut(s) 610, 916, 1060
BccI CCATC 6 cut(s) 246, 338, 663, 793, 1054, 1088
BcgI CGANNNNNNTGC 2 cut(s) 154, 188
BciT130I CCWGG 4 cut(s) 260, 300, 378, 520
BcoDI GTCTC 1 cut(s) 647
BcuI ACTAGT 1 cut(s) 136
BfaI CTAG 5 cut(s) 129, 137, 357, 774, 1131
BfmI CTRYAG 2 cut(s) 195, 950
BglII AGATCT 1 cut(s) 937
BisI GCNGC 3 cut(s) 624, 930, 1074
BlsI GCNGC 3 cut(s) 625, 931, 1075
Bme1390I CCNGG 4 cut(s) 260, 300, 378, 520
Bme18I GGWCC 2 cut(s) 53, 392
BmgT120I GGNCC 3 cut(s) 53, 392, 1127
BmiI GGNNCC 1 cut(s) 99
BmrFI CCNGG 4 cut(s) 260, 300, 378, 520
BmrI ACTGGG 1 cut(s) 1033
BmsI GCATC 4 cut(s) 49, 331, 535, 870
BmuI ACTGGG 1 cut(s) 1033
BpiI GAAGAC 2 cut(s) 263, 819
BpmI CTGGAG 1 cut(s) 586
BpuEI CTTGAG 1 cut(s) 962
BsaBI GATNNNNATC 1 cut(s) 237
BsaI GGTCTC 1 cut(s) 647
BsaJI CCNNGG 2 cut(s) 519, 1010
BsaWI WCCGGW 3 cut(s) 55, 100, 699
Bsc4I CCNNNNNNNGG 3 cut(s) 519, 593, 925
Bse1I ACTGG 2 cut(s) 1028, 1046
Bse8I GATNNNNATC 1 cut(s) 237
BseAI TCCGGA 1 cut(s) 55
BseBI CCWGG 4 cut(s) 260, 300, 378, 520
BseDI CCNNGG 2 cut(s) 519, 1010
BseGI GGATG 5 cut(s) 64, 322, 550, 862, 1046
BseJI GATNNNNATC 1 cut(s) 237
BseLI CCNNNNNNNGG 3 cut(s) 519, 593, 925
BseMII CTCAG 3 cut(s) 360, 658, 1019
BseNI ACTGG 2 cut(s) 1028, 1046
BseXI GCAGC 3 cut(s) 610, 916, 1060
BsgI GTGCAG 1 cut(s) 655
BshFI GGCC 3 cut(s) 376, 1045, 1129
BsiSI CCGG 3 cut(s) 56, 101, 700
BslFI GGGAC 1 cut(s) 1015
BslI CCNNNNNNNGG 3 cut(s) 519, 593, 925
BsmAI GTCTC 1 cut(s) 647
BsmFI GGGAC 1 cut(s) 1015
BsmI GAATGC 1 cut(s) 1015
BsnI GGCC 3 cut(s) 376, 1045, 1129
Bso31I GGTCTC 1 cut(s) 647
Bsp1286I GDGCHC 1 cut(s) 875
Bsp13I TCCGGA 1 cut(s) 55
Bsp143I GATC 6 cut(s) 105, 295, 559, 937, 946, 1027
BspACI CCGC 2 cut(s) 728, 758
BspANI GGCC 3 cut(s) 376, 1045, 1129
BspCNI CTCAG 3 cut(s) 361, 657, 1018
BspEI TCCGGA 1 cut(s) 55
BspHI TCATGA 1 cut(s) 531
BspLI GGNNCC 1 cut(s) 99
BspPI GGATC 3 cut(s) 290, 954, 1035
BspTNI GGTCTC 1 cut(s) 647
BsrI ACTGG 2 cut(s) 1028, 1046
BssECI CCNNGG 2 cut(s) 519, 1010
BssMI GATC 6 cut(s) 105, 295, 559, 937, 946, 1027
Bst2UI CCWGG 4 cut(s) 260, 300, 378, 520
Bst4CI ACNGT 3 cut(s) 82, 199, 403
BstC8I GCNNGC 1 cut(s) 320
BstDEI CTNAG 3 cut(s) 369, 644, 1005
BstENI CCTNNNNNAGG 1 cut(s) 591
BstF5I GGATG 5 cut(s) 64, 322, 550, 862, 1046
BstKTI GATC 6 cut(s) 108, 298, 562, 940, 949, 1030
BstMAI GTCTC 1 cut(s) 647
BstMBI GATC 6 cut(s) 105, 295, 559, 937, 946, 1027
BstMWI GCNNNNNNNGC 2 cut(s) 36, 929
BstNI CCWGG 4 cut(s) 260, 300, 378, 520
BstSCI CCNGG 4 cut(s) 258, 298, 376, 518
BstSFI CTRYAG 2 cut(s) 195, 950
BstV1I GCAGC 3 cut(s) 610, 916, 1060
BstV2I GAAGAC 2 cut(s) 263, 819
BstX2I RGATCY 3 cut(s) 295, 937, 946
BstYI RGATCY 3 cut(s) 295, 937, 946
BsuRI GGCC 3 cut(s) 376, 1045, 1129
BtsCI GGATG 5 cut(s) 64, 322, 550, 862, 1046
Cac8I GCNNGC 1 cut(s) 320
CciI TCATGA 1 cut(s) 531
Cfr13I GGNCC 3 cut(s) 53, 392, 1127
CsiI ACCWGGT 1 cut(s) 258
Csp6I GTAC 1 cut(s) 404
CviAII CATG 3 cut(s) 218, 490, 532
CviQI GTAC 1 cut(s) 404
DdeI CTNAG 3 cut(s) 369, 644, 1005
DpnI GATC 6 cut(s) 107, 297, 561, 939, 948, 1029
DpnII GATC 6 cut(s) 105, 295, 559, 937, 946, 1027
EaeI YGGCCR 2 cut(s) 374, 1043
Eco24I GRGCYC 1 cut(s) 875
Eco31I GGTCTC 1 cut(s) 647
Eco47I GGWCC 2 cut(s) 53, 392
Eco57I CTGAAG 2 cut(s) 784, 954
EcoNI CCTNNNNNAGG 1 cut(s) 591
EcoO109I RGGNCCY 1 cut(s) 1127
EcoRI GAATTC 3 cut(s) 597, 777, 1079
EcoRII CCWGG 4 cut(s) 258, 298, 376, 518
EcoT38I GRGCYC 1 cut(s) 875
FaeI CATG 3 cut(s) 221, 493, 535
FaqI GGGAC 1 cut(s) 1015
FatI CATG 3 cut(s) 217, 489, 531
FauI CCCGC 1 cut(s) 735
Fnu4HI GCNGC 3 cut(s) 624, 930, 1074
FokI GGATG 5 cut(s) 71, 309, 557, 849, 1033
FriOI GRGCYC 1 cut(s) 875
Fsp4HI GCNGC 3 cut(s) 624, 930, 1074
FspBI CTAG 5 cut(s) 129, 137, 357, 774, 1131
GluI GCNGC 3 cut(s) 624, 930, 1074
GsuI CTGGAG 1 cut(s) 586
HaeIII GGCC 3 cut(s) 376, 1045, 1129
HapII CCGG 3 cut(s) 56, 101, 700
Hin1II CATG 3 cut(s) 221, 493, 535
HinfI GANTC 6 cut(s) 73, 233, 459, 821, 955, 1003
HpaII CCGG 3 cut(s) 56, 101, 700
HphI GGTGA 2 cut(s) 115, 576
Hpy166II GTNNAC 1 cut(s) 526
Hpy188I TCNGA 6 cut(s) 370, 387, 681, 960, 1032, 1085
Hpy8I GTNNAC 1 cut(s) 526
HpyAV CCTTC 2 cut(s) 523, 1118
HpyCH4III ACNGT 3 cut(s) 82, 199, 403
HpyCH4IV ACGT 1 cut(s) 528
HpyCH4V TGCA 2 cut(s) 322, 672
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 929
HpyF3I CTNAG 3 cut(s) 369, 644, 1005
HpySE526I ACGT 1 cut(s) 528
Hsp92II CATG 3 cut(s) 221, 493, 535
Kpn2I TCCGGA 1 cut(s) 55
Kzo9I GATC 6 cut(s) 105, 295, 559, 937, 946, 1027
LmnI GCTCC 1 cut(s) 620
Lsp1109I GCAGC 3 cut(s) 610, 916, 1060
LweI GCATC 4 cut(s) 49, 331, 535, 870
MabI ACCWGGT 1 cut(s) 258
MaeI CTAG 5 cut(s) 129, 137, 357, 774, 1131
MaeII ACGT 1 cut(s) 528
MaeIII GTNAC 2 cut(s) 582, 1133
MalI GATC 6 cut(s) 107, 297, 561, 939, 948, 1029
MboI GATC 6 cut(s) 105, 295, 559, 937, 946, 1027
MboII GAAGA 6 cut(s) 263, 350, 819, 947, 1103, 1129
MfeI CAATTG 1 cut(s) 438
MflI RGATCY 3 cut(s) 295, 937, 946
MhlI GDGCHC 1 cut(s) 875
MlsI TGGCCA 2 cut(s) 376, 1045
MluNI TGGCCA 2 cut(s) 376, 1045
MlyI GAGTC 3 cut(s) 830, 964, 997
MmeI TCCRAC 2 cut(s) 616, 969
Mox20I TGGCCA 2 cut(s) 376, 1045
MroI TCCGGA 1 cut(s) 55
MscI TGGCCA 2 cut(s) 376, 1045
MseI TTAA 3 cut(s) 429, 665, 813
MslI CAYNNNNRTG 4 cut(s) 370, 488, 735, 905
Msp20I TGGCCA 2 cut(s) 376, 1045
MspI CCGG 3 cut(s) 56, 101, 700
MspR9I CCNGG 4 cut(s) 260, 300, 378, 520
MunI CAATTG 1 cut(s) 438
Mva1269I GAATGC 1 cut(s) 1015
MvaI CCWGG 4 cut(s) 260, 300, 378, 520
MwoI GCNNNNNNNGC 2 cut(s) 36, 929
NdeII GATC 6 cut(s) 105, 295, 559, 937, 946, 1027
NlaIII CATG 3 cut(s) 221, 493, 535
NlaIV GGNNCC 1 cut(s) 99
NmeAIII GCCGAG 1 cut(s) 1035
NmuCI GTSAC 2 cut(s) 582, 1133
OliI CACNNNNGTG 1 cut(s) 735
PagI TCATGA 1 cut(s) 531
PctI GAATGC 1 cut(s) 1015
PfeI GAWTC 3 cut(s) 73, 233, 459
PflMI CCANNNNNTGG 1 cut(s) 925
PkrI GCNGC 3 cut(s) 625, 931, 1075
PleI GAGTC 3 cut(s) 829, 963, 997
PpsI GAGTC 3 cut(s) 829, 963, 997
Psp6I CCWGG 4 cut(s) 258, 298, 376, 518
PspGI CCWGG 4 cut(s) 258, 298, 376, 518
PspN4I GGNNCC 1 cut(s) 99
PspPI GGNCC 3 cut(s) 53, 392, 1127
PsuI RGATCY 3 cut(s) 295, 937, 946
RsaI GTAC 1 cut(s) 405
RsaNI GTAC 1 cut(s) 404
RseI CAYNNNNRTG 4 cut(s) 370, 488, 735, 905
SaqAI TTAA 3 cut(s) 429, 665, 813
SatI GCNGC 3 cut(s) 624, 930, 1074
Sau3AI GATC 6 cut(s) 105, 295, 559, 937, 946, 1027
Sau96I GGNCC 3 cut(s) 53, 392, 1127
SchI GAGTC 3 cut(s) 830, 964, 997
ScrFI CCNGG 4 cut(s) 260, 300, 378, 520
SduI GDGCHC 1 cut(s) 875
SexAI ACCWGGT 1 cut(s) 258
SfaNI GCATC 4 cut(s) 49, 331, 535, 870
SfcI CTRYAG 2 cut(s) 195, 950
SinI GGWCC 2 cut(s) 53, 392
SmiMI CAYNNNNRTG 4 cut(s) 370, 488, 735, 905
SmlI CTYRAG 1 cut(s) 941
SmoI CTYRAG 1 cut(s) 941
SpeI ACTAGT 1 cut(s) 136
SsiI CCGC 2 cut(s) 728, 758
SspI AATATT 1 cut(s) 754
SspMI CTAG 5 cut(s) 129, 137, 357, 774, 1131
StyD4I CCNGG 4 cut(s) 258, 298, 376, 518
TaaI ACNGT 3 cut(s) 82, 199, 403
TaiI ACGT 1 cut(s) 531
TaqI TCGA 1 cut(s) 313
TfiI GAWTC 3 cut(s) 73, 233, 459
Tru1I TTAA 3 cut(s) 429, 665, 813
Tru9I TTAA 3 cut(s) 429, 665, 813
TseFI GTSAC 2 cut(s) 582, 1133
TseI GCWGC 3 cut(s) 623, 929, 1073
Tsp45I GTSAC 2 cut(s) 582, 1133
TspDTI ATGAA 3 cut(s) 548, 737, 843
Van91I CCANNNNNTGG 1 cut(s) 925
VpaK11BI GGWCC 2 cut(s) 53, 392
XagI CCTNNNNNAGG 1 cut(s) 591
XapI RAATTY 4 cut(s) 23, 597, 777, 1079
XbaI TCTAGA 2 cut(s) 128, 773
XspI CTAG 5 cut(s) 129, 137, 357, 774, 1131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.