Rw4G024570

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0011556
Physical Location & Seq
Forward (+)
50395346 .. 50399390
4045 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G024570.1

Sequence Viewer

Length: 1335 bp
ATGAGAAAAGACGACGACTTGGTCAGAACGCGGGAAGGAATGCACGGTAGTTCTATGCATGATCAGCATTCCAACTCCGACCGCCGGATTATGGACCCACCTGGCCCCTCCCTCAGAGTATTTCAAGTTTGGAAAGGAAACAATAAATTTTGCTTCAATGGCAGACTGATATTTGGTCCGGATGCCAAGTCATTGATTCTTACTGTGTCGCTGATTGTGGTTCCGGTGATCTTGTTTTGTGCTTTTGTTTCTAGAGGACTAGTTCGTATTTTCCCCTACCATATTGGCAATTTTATCGTGGCTTTAGCTGTTGTGTCTACAGTCTGTGTTGTTAGTCTTCTCTTGATTACAGCTTCAAGAGATCCTGGCATTATTCCTCGAAGCCTGCATCCTCCTGAACCAGAAGATGATGGTTATATGTCTAGTATGTCATCTGAGTGGCCAGGAAGTCAGAATGGACCACCAACTGTACCACCCACAAAAGATATAATGGTTAATGGCTCAATTGTCAAGGTCAAATACTGCCATACATGCATGCTATATCGTCCGCCCCGATGCTCGCACTGCTCTATATGCAACAATTGTGTGGAGCGTTTTGATCACCATTGCCCATGGGTGGGGCAATGTATTGGGAGAAGGAATTACCGATTTTTTTTCCTGTTTGTGTCCTCCACAGCCATGCTGTGCCTCTATGTCTTTGCCTTCTCCTGGGTAAACATCATGAAAATAATGGATACTTACCATTATGATCTCTGGAGAGCTTTATTGAAGTCACCTGTTTCAGGAATTCTAATTCTATATACATTTGGAGCTGCTTGGTTTGTTGGAGGTCTCAGTAGCTTCCATCTATATTTAATCTGCACCAATCAGACAACTTATGAGAACTTCCGGTATCGCTACACTATCAAGATGAACCCACATAATCGTGGGTGTTTTGAAAATATCGCGGAAGTTTTCTGCTCTAGAATTCCTCCATCTAAACATAACTTCAGGGAAAAGGTTAAGGGCGAGTCGTCTTCTGTCTATACCAATTCAACAATTTCATTAGGTCATCCTATGAGCCCAGAGATGCCCAAACCAAGATATGACATAGAGATGGGAAAACGCCAAGCTGTGGCTGCCGAAGATCTTGAGGATCTACAGAGTCAGATTGATAGTGTTGTTGGTATGGATAGGTTGGAGAGGTGTGGAACTCAGCCGAGGCATTCAAACTGGGATCAGAAAGCCAACTGGCCATCCACACCTGATATACAAATCTTGGCTGCTGAGTTCGGAATGGAAGATGGTTCAACAACAGGCAGACAGAAGATTGAAGGGCCTAGTGACCTAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04391 map04391
Pfam Domains
Protein Families
DHHC

Protein Analysis

444

Amino Acids

50.33

Weight (kDa)

8.52

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 173 - 297 4.7e-38 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 20
AccB7I CCANNNNNTGG 1 cut(s) 1114
AccI GTMKAC 1 cut(s) 317
AccII CGCG 2 cut(s) 31, 947
AccIII TCCGGA 1 cut(s) 178
AciI CCGC 4 cut(s) 31, 82, 548, 947
AclWI GGATC 3 cut(s) 356, 1143, 1224
AcoI YGGCCR 2 cut(s) 440, 1232
AcsI RAATTY 3 cut(s) 146, 786, 966
AcuI CTGAAG 1 cut(s) 973
AfaI GTAC 1 cut(s) 471
AfiI CCNNNNNNNGG 7 cut(s) 84, 91, 616, 617, 708, 782, 1114
AgsI TTSAA 9 cut(s) 125, 157, 357, 769, 938, 1035, 1209, 1290, 1313
AhlI ACTAGT 1 cut(s) 259
AjnI CCWGG 4 cut(s) 100, 364, 442, 707
AluBI AGCT 6 cut(s) 308, 353, 761, 812, 840, 1112
AluI AGCT 6 cut(s) 308, 353, 761, 812, 840, 1112
Alw26I GTCTC 1 cut(s) 836
AlwI GGATC 3 cut(s) 356, 1143, 1224
Aor13HI TCCGGA 1 cut(s) 178
AoxI GGCC 4 cut(s) 103, 440, 1232, 1316
ApeKI GCWGC 3 cut(s) 812, 1118, 1262
ApoI RAATTY 3 cut(s) 146, 786, 966
AspS9I GGNCC 5 cut(s) 94, 104, 176, 458, 1316
AsuHPI GGTGA 3 cut(s) 238, 593, 765
AvaII GGWCC 3 cut(s) 94, 176, 458
BalI TGGCCA 2 cut(s) 442, 1234
BanII GRGCYC 1 cut(s) 1064
BbsI GAAGAC 2 cut(s) 329, 1008
BbvI GCAGC 3 cut(s) 799, 1105, 1249
BccI CCATC 6 cut(s) 404, 852, 982, 1090, 1243, 1277
BcgI CGANNNNNNTGC 2 cut(s) 277, 311
BciT130I CCWGG 4 cut(s) 102, 366, 444, 709
BciVI GTATCC 1 cut(s) 727
BclI TGATCA 2 cut(s) 61, 598
BcoDI GTCTC 1 cut(s) 836
BcuI ACTAGT 1 cut(s) 259
BfaI CTAG 5 cut(s) 252, 260, 423, 963, 1320
BfmI CTRYAG 2 cut(s) 318, 1139
BfuI GTATCC 1 cut(s) 727
BglII AGATCT 1 cut(s) 1126
BisI GCNGC 3 cut(s) 813, 1119, 1263
BlsI GCNGC 3 cut(s) 814, 1120, 1264
Bme1390I CCNGG 4 cut(s) 102, 366, 444, 709
Bme18I GGWCC 3 cut(s) 94, 176, 458
BmgT120I GGNCC 5 cut(s) 94, 104, 176, 458, 1316
BmiI GGNNCC 3 cut(s) 96, 106, 222
BmrFI CCNGG 4 cut(s) 102, 366, 444, 709
BmrI ACTGGG 1 cut(s) 1222
BmsI GCATC 4 cut(s) 172, 397, 545, 1059
BmuI ACTGGG 1 cut(s) 1222
BpiI GAAGAC 2 cut(s) 329, 1008
BpmI CTGGAG 1 cut(s) 775
BpuEI CTTGAG 1 cut(s) 1151
BsaI GGTCTC 1 cut(s) 836
BsaJI CCNNGG 3 cut(s) 611, 708, 1199
BsaWI WCCGGW 3 cut(s) 178, 223, 888
Bsc4I CCNNNNNNNGG 7 cut(s) 84, 91, 616, 617, 708, 782, 1114
Bse1I ACTGG 2 cut(s) 1217, 1235
Bse3DI GCAATG 2 cut(s) 604, 629
BseAI TCCGGA 1 cut(s) 178
BseBI CCWGG 4 cut(s) 102, 366, 444, 709
BseDI CCNNGG 3 cut(s) 611, 708, 1199
BseGI GGATG 4 cut(s) 187, 388, 1051, 1235
BseLI CCNNNNNNNGG 7 cut(s) 84, 91, 616, 617, 708, 782, 1114
BseMI GCAATG 2 cut(s) 604, 629
BseMII CTCAG 5 cut(s) 127, 426, 847, 1208, 1257
BseNI ACTGG 2 cut(s) 1217, 1235
BseXI GCAGC 3 cut(s) 799, 1105, 1249
BsgI GTGCAG 1 cut(s) 844
Bsh1236I CGCG 2 cut(s) 31, 947
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 4 cut(s) 105, 442, 1234, 1318
BsiEI CGRYCG 1 cut(s) 82
BsiSI CCGG 4 cut(s) 85, 179, 224, 889
BslI CCNNNNNNNGG 7 cut(s) 84, 91, 616, 617, 708, 782, 1114
BsmAI GTCTC 1 cut(s) 836
BsmI GAATGC 3 cut(s) 45, 67, 1204
BsnI GGCC 4 cut(s) 105, 442, 1234, 1318
Bso31I GGTCTC 1 cut(s) 836
Bsp1286I GDGCHC 1 cut(s) 1064
Bsp13I TCCGGA 1 cut(s) 178
Bsp143I GATC 8 cut(s) 61, 228, 361, 598, 748, 1126, 1135, 1216
Bsp19I CCATGG 1 cut(s) 611
BspACI CCGC 4 cut(s) 31, 82, 548, 947
BspANI GGCC 4 cut(s) 105, 442, 1234, 1318
BspCNI CTCAG 5 cut(s) 126, 427, 846, 1207, 1258
BspEI TCCGGA 1 cut(s) 178
BspFNI CGCG 2 cut(s) 31, 947
BspHI TCATGA 1 cut(s) 720
BspLI GGNNCC 3 cut(s) 96, 106, 222
BspPI GGATC 3 cut(s) 356, 1143, 1224
BspTNI GGTCTC 1 cut(s) 836
BsrDI GCAATG 2 cut(s) 604, 629
BsrI ACTGG 2 cut(s) 1217, 1235
BssECI CCNNGG 3 cut(s) 611, 708, 1199
BssMI GATC 8 cut(s) 61, 228, 361, 598, 748, 1126, 1135, 1216
BssT1I CCWWGG 1 cut(s) 611
Bst2UI CCWGG 4 cut(s) 102, 366, 444, 709
Bst4CI ACNGT 4 cut(s) 47, 205, 322, 469
BstC8I GCNNGC 3 cut(s) 386, 536, 560
BstDEI CTNAG 5 cut(s) 113, 435, 833, 1194, 1266
BstDSI CCRYGG 1 cut(s) 611
BstENI CCTNNNNNAGG 1 cut(s) 780
BstF5I GGATG 4 cut(s) 187, 388, 1051, 1235
BstFNI CGCG 2 cut(s) 31, 947
BstKTI GATC 8 cut(s) 64, 231, 364, 601, 751, 1129, 1138, 1219
BstMAI GTCTC 1 cut(s) 836
BstMBI GATC 8 cut(s) 61, 228, 361, 598, 748, 1126, 1135, 1216
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 6 cut(s) 64, 159, 531, 564, 573, 1118
BstNI CCWGG 4 cut(s) 102, 366, 444, 709
BstNSI RCATGY 2 cut(s) 534, 538
BstSCI CCNGG 4 cut(s) 100, 364, 442, 707
BstSFI CTRYAG 2 cut(s) 318, 1139
BstUI CGCG 2 cut(s) 31, 947
BstV1I GCAGC 3 cut(s) 799, 1105, 1249
BstV2I GAAGAC 2 cut(s) 329, 1008
BstX2I RGATCY 3 cut(s) 361, 1126, 1135
BstYI RGATCY 3 cut(s) 361, 1126, 1135
BsuI GTATCC 1 cut(s) 727
BsuRI GGCC 4 cut(s) 105, 442, 1234, 1318
BtgI CCRYGG 1 cut(s) 611
BtsCI GGATG 4 cut(s) 187, 388, 1051, 1235
BtsI GCAGTG 1 cut(s) 562
BtsIMutI CAGTG 1 cut(s) 562
Cac8I GCNNGC 3 cut(s) 386, 536, 560
CciI TCATGA 1 cut(s) 720
Cfr13I GGNCC 5 cut(s) 94, 104, 176, 458, 1316
Csp6I GTAC 1 cut(s) 470
CviAII CATG 6 cut(s) 59, 531, 535, 612, 679, 721
CviQI GTAC 1 cut(s) 470
DdeI CTNAG 5 cut(s) 113, 435, 833, 1194, 1266
DpnI GATC 8 cut(s) 63, 230, 363, 600, 750, 1128, 1137, 1218
DpnII GATC 8 cut(s) 61, 228, 361, 598, 748, 1126, 1135, 1216
DrdI GACNNNNNNGTC 1 cut(s) 20
DseDI GACNNNNNNGTC 1 cut(s) 20
EaeI YGGCCR 2 cut(s) 440, 1232
EciI GGCGGA 1 cut(s) 537
Eco130I CCWWGG 1 cut(s) 611
Eco24I GRGCYC 1 cut(s) 1064
Eco31I GGTCTC 1 cut(s) 836
Eco47I GGWCC 3 cut(s) 94, 176, 458
Eco57I CTGAAG 1 cut(s) 973
EcoNI CCTNNNNNAGG 1 cut(s) 780
EcoO109I RGGNCCY 1 cut(s) 1316
EcoRI GAATTC 2 cut(s) 786, 966
EcoRII CCWGG 4 cut(s) 100, 364, 442, 707
EcoT14I CCWWGG 1 cut(s) 611
EcoT22I ATGCAT 2 cut(s) 60, 536
EcoT38I GRGCYC 1 cut(s) 1064
ErhI CCWWGG 1 cut(s) 611
FaeI CATG 6 cut(s) 62, 534, 538, 615, 682, 724
FatI CATG 6 cut(s) 58, 530, 534, 611, 678, 720
FauI CCCGC 1 cut(s) 24
FbaI TGATCA 2 cut(s) 61, 598
FblI GTMKAC 1 cut(s) 317
Fnu4HI GCNGC 3 cut(s) 813, 1119, 1263
FokI GGATG 4 cut(s) 194, 375, 1038, 1222
FriOI GRGCYC 1 cut(s) 1064
Fsp4HI GCNGC 3 cut(s) 813, 1119, 1263
FspBI CTAG 5 cut(s) 252, 260, 423, 963, 1320
GluI GCNGC 3 cut(s) 813, 1119, 1263
GsuI CTGGAG 1 cut(s) 775
HaeIII GGCC 4 cut(s) 105, 442, 1234, 1318
HapII CCGG 4 cut(s) 85, 179, 224, 889
Hin1II CATG 6 cut(s) 62, 534, 538, 615, 682, 724
HinfI GANTC 3 cut(s) 196, 1010, 1144
HpaII CCGG 4 cut(s) 85, 179, 224, 889
HphI GGTGA 3 cut(s) 238, 593, 765
Hpy166II GTNNAC 2 cut(s) 318, 715
Hpy188I TCNGA 9 cut(s) 26, 79, 116, 436, 453, 870, 1149, 1221, 1274
Hpy8I GTNNAC 2 cut(s) 318, 715
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 4 cut(s) 29, 630, 712, 1307
HpyCH4III ACNGT 4 cut(s) 47, 205, 322, 469
HpyCH4V TGCA 6 cut(s) 43, 58, 388, 534, 576, 861
HpyF10VI GCNNNNNNNGC 6 cut(s) 64, 159, 531, 564, 573, 1118
HpyF3I CTNAG 5 cut(s) 113, 435, 833, 1194, 1266
Hsp92II CATG 6 cut(s) 62, 534, 538, 615, 682, 724
Kpn2I TCCGGA 1 cut(s) 178
Ksp22I TGATCA 2 cut(s) 61, 598
Kzo9I GATC 8 cut(s) 61, 228, 361, 598, 748, 1126, 1135, 1216
LmnI GCTCC 2 cut(s) 589, 809
Lsp1109I GCAGC 3 cut(s) 799, 1105, 1249
LweI GCATC 4 cut(s) 172, 397, 545, 1059
MaeI CTAG 5 cut(s) 252, 260, 423, 963, 1320
MaeIII GTNAC 2 cut(s) 771, 1322
MalI GATC 8 cut(s) 63, 230, 363, 600, 750, 1128, 1137, 1218
MboI GATC 8 cut(s) 61, 228, 361, 598, 748, 1126, 1135, 1216
MboII GAAGA 6 cut(s) 329, 416, 1008, 1136, 1292, 1318
MfeI CAATTG 2 cut(s) 504, 580
MflI RGATCY 3 cut(s) 361, 1126, 1135
MhlI GDGCHC 1 cut(s) 1064
MlsI TGGCCA 2 cut(s) 442, 1234
MluNI TGGCCA 2 cut(s) 442, 1234
MlyI GAGTC 2 cut(s) 1019, 1153
MmeI TCCRAC 4 cut(s) 96, 102, 805, 1158
Mox20I TGGCCA 2 cut(s) 442, 1234
Mph1103I ATGCAT 2 cut(s) 60, 536
MroI TCCGGA 1 cut(s) 178
MscI TGGCCA 2 cut(s) 442, 1234
MseI TTAA 3 cut(s) 495, 854, 1002
MslI CAYNNNNRTG 4 cut(s) 436, 677, 924, 1094
Msp20I TGGCCA 2 cut(s) 442, 1234
MspI CCGG 4 cut(s) 85, 179, 224, 889
MspR9I CCNGG 4 cut(s) 102, 366, 444, 709
MunI CAATTG 2 cut(s) 504, 580
Mva1269I GAATGC 3 cut(s) 45, 67, 1204
MvaI CCWGG 4 cut(s) 102, 366, 444, 709
MvnI CGCG 2 cut(s) 31, 947
MwoI GCNNNNNNNGC 6 cut(s) 64, 159, 531, 564, 573, 1118
NcoI CCATGG 1 cut(s) 611
NdeII GATC 8 cut(s) 61, 228, 361, 598, 748, 1126, 1135, 1216
NlaIII CATG 6 cut(s) 62, 534, 538, 615, 682, 724
NlaIV GGNNCC 3 cut(s) 96, 106, 222
NmeAIII GCCGAG 1 cut(s) 1224
NmuCI GTSAC 2 cut(s) 771, 1322
NsiI ATGCAT 2 cut(s) 60, 536
NspI RCATGY 2 cut(s) 534, 538
PaeI GCATGC 1 cut(s) 538
PagI TCATGA 1 cut(s) 720
PcsI WCGNNNNNNNCGW 1 cut(s) 550
PctI GAATGC 3 cut(s) 45, 67, 1204
PfeI GAWTC 1 cut(s) 196
PflFI GACNNNGTC 1 cut(s) 20
PflMI CCANNNNNTGG 1 cut(s) 1114
PkrI GCNGC 3 cut(s) 814, 1120, 1264
PleI GAGTC 2 cut(s) 1018, 1152
PpsI GAGTC 2 cut(s) 1018, 1152
Psp6I CCWGG 4 cut(s) 100, 364, 442, 707
PspGI CCWGG 4 cut(s) 100, 364, 442, 707
PspN4I GGNNCC 3 cut(s) 96, 106, 222
PspPI GGNCC 5 cut(s) 94, 104, 176, 458, 1316
PsuI RGATCY 3 cut(s) 361, 1126, 1135
PsyI GACNNNGTC 1 cut(s) 20
RsaI GTAC 1 cut(s) 471
RsaNI GTAC 1 cut(s) 470
RseI CAYNNNNRTG 4 cut(s) 436, 677, 924, 1094
SaqAI TTAA 3 cut(s) 495, 854, 1002
SatI GCNGC 3 cut(s) 813, 1119, 1263
Sau3AI GATC 8 cut(s) 61, 228, 361, 598, 748, 1126, 1135, 1216
Sau96I GGNCC 5 cut(s) 94, 104, 176, 458, 1316
SchI GAGTC 2 cut(s) 1019, 1153
ScrFI CCNGG 4 cut(s) 102, 366, 444, 709
SduI GDGCHC 1 cut(s) 1064
SfaNI GCATC 4 cut(s) 172, 397, 545, 1059
SfcI CTRYAG 2 cut(s) 318, 1139
SinI GGWCC 3 cut(s) 94, 176, 458
SmiMI CAYNNNNRTG 4 cut(s) 436, 677, 924, 1094
SmlI CTYRAG 1 cut(s) 1130
SmoI CTYRAG 1 cut(s) 1130
SpeI ACTAGT 1 cut(s) 259
SphI GCATGC 1 cut(s) 538
SsiI CCGC 4 cut(s) 31, 82, 548, 947
SspMI CTAG 5 cut(s) 252, 260, 423, 963, 1320
StyD4I CCNGG 4 cut(s) 100, 364, 442, 707
StyI CCWWGG 1 cut(s) 611
TaaI ACNGT 4 cut(s) 47, 205, 322, 469
TaqI TCGA 1 cut(s) 379
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 3 cut(s) 495, 854, 1002
Tru9I TTAA 3 cut(s) 495, 854, 1002
TscAI CASTG 1 cut(s) 569
TseFI GTSAC 2 cut(s) 771, 1322
TseI GCWGC 3 cut(s) 812, 1118, 1262
Tsp45I GTSAC 2 cut(s) 771, 1322
TspDTI ATGAA 3 cut(s) 737, 926, 1032
TspRI CASTG 1 cut(s) 569
Tth111I GACNNNGTC 1 cut(s) 20
Van91I CCANNNNNTGG 1 cut(s) 1114
VpaK11BI GGWCC 3 cut(s) 94, 176, 458
XagI CCTNNNNNAGG 1 cut(s) 780
XapI RAATTY 3 cut(s) 146, 786, 966
XbaI TCTAGA 2 cut(s) 251, 962
XceI RCATGY 2 cut(s) 534, 538
XmiI GTMKAC 1 cut(s) 317
XspI CTAG 5 cut(s) 252, 260, 423, 963, 1320
Zsp2I ATGCAT 2 cut(s) 60, 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.