Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0010052

Physical Location & Seq

Genomic Coordinates Forward (+)

25796146 .. 25797535

Gene Structure 1390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g23240.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGACGTTGGCGGGAGATCTGCACAGAGCAGCCATTTCTCCGCCGTCTAGAGGTGTGGAGTCAAATTATAACTGTGGTGGGAATTTGGTGCAGGTTTTTGTTGGATCAAGATTGAATGTTACCGGAGCATGGCAAATGCCGCAGGGCGGTATTGAAGATGGTGAAGAACCCAAATCAGCAGCTATTAGGGAACTACAAGAAGAGACTGGGGTAGTGTCTGTTGAAATTATAGCCAAGGTCTCGAATTGGTTGACATATGACTTCCCAGTTCCCACCTCCCGTGAAGACCAAATTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004081 GO:0004551 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008796 GO:0008893 GO:0009056 GO:0009058 GO:0009117 GO:0009166 GO:0009987 GO:0015959 GO:0015961 GO:0015965 GO:0015967 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042578 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0046434 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

100

Amino Acids

10.67

Weight (kDa)

4.55

Isoelectric Point (pI)

56.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	41 - 94	2.5e-14	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30110 AT1G30110
fragaria_vesca	FvH4_4g23240 FvH4_4g32510 FvH4_4g32510 FvH4_4g32510
malus_domestica	MD13G1024600.v1.1 MD16G1027300.v1.1
prunus_persica	Prupe.1G325900_v2.0.a1
pyrus_communis	pycom13g02290 pycom16g02310
rosa_chinensis	RchiOBHm_Chr4g0441391
rosa_laevigata	RLG00000006095
rosa_multiflora	Rmu_sc0005516.1_g000004
rosa_roxburghii	Rroxscaffold_5G00382270
rosa_rugosa	Rorug04G0333000
rosa_samantha	Rh4AG385000 Rh4BG399000 Rh4CG414100 Rh4DG391700
rosa_wichuraiana	Rw4G033240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	69
Acc36I	ACCTGC	1 cut(s)	82
AciI	CCGC	4 cut(s)	11, 41, 140, 147
AclWI	GGATC	1 cut(s)	112
AcsI	RAATTY	1 cut(s)	82
AfiI	CCNNNNNNNGG	3 cut(s)	50, 129, 146
AgsI	TTSAA	3 cut(s)	115, 155, 224
AluBI	AGCT	1 cut(s)	182
AluI	AGCT	1 cut(s)	182
Alw26I	GTCTC	2 cut(s)	197, 244
AlwI	GGATC	1 cut(s)	112
ApeKI	GCWGC	2 cut(s)	29, 179
ApoI	RAATTY	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	291
BbvI	GCAGC	2 cut(s)	41, 191
BccI	CCATC	1 cut(s)	152
BceAI	ACGGC	1 cut(s)	28
BcoDI	GTCTC	2 cut(s)	197, 244
BfaI	CTAG	1 cut(s)	48
BfuAI	ACCTGC	1 cut(s)	82
BglII	AGATCT	1 cut(s)	16
BisI	GCNGC	3 cut(s)	30, 140, 180
BlsI	GCNGC	3 cut(s)	31, 141, 181
BmrI	ACTGGG	2 cut(s)	216, 260
BmuI	ACTGGG	2 cut(s)	216, 260
BpiI	GAAGAC	1 cut(s)	291
BsaI	GGTCTC	1 cut(s)	244
BsaJI	CCNNGG	1 cut(s)	234
BsaWI	WCCGGW	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 129, 146
Bse1I	ACTGG	2 cut(s)	211, 266
BseDI	CCNNGG	1 cut(s)	234
BseLI	CCNNNNNNNGG	3 cut(s)	50, 129, 146
BseNI	ACTGG	2 cut(s)	211, 266
BseXI	GCAGC	2 cut(s)	41, 191
BsgI	GTGCAG	2 cut(s)	5, 110
BsiSI	CCGG	1 cut(s)	123
BslI	CCNNNNNNNGG	3 cut(s)	50, 129, 146
BsmAI	GTCTC	2 cut(s)	197, 244
Bso31I	GGTCTC	1 cut(s)	244
Bsp143I	GATC	2 cut(s)	16, 104
BspACI	CCGC	4 cut(s)	11, 41, 140, 147
BspMI	ACCTGC	1 cut(s)	82
BspPI	GGATC	1 cut(s)	112
BspTNI	GGTCTC	1 cut(s)	244
BsrI	ACTGG	2 cut(s)	211, 266
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	2 cut(s)	16, 104
BssT1I	CCWWGG	1 cut(s)	234
Bst4CI	ACNGT	1 cut(s)	74
Bst6I	CTCTTC	1 cut(s)	195
BstKTI	GATC	2 cut(s)	19, 107
BstMAI	GTCTC	2 cut(s)	197, 244
BstMBI	GATC	2 cut(s)	16, 104
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstV1I	GCAGC	2 cut(s)	41, 191
BstV2I	GAAGAC	1 cut(s)	291
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
BveI	ACCTGC	1 cut(s)	82
CviAII	CATG	1 cut(s)	129
CviJI	RGCY	3 cut(s)	32, 182, 233
CviKI_1	RGCY	3 cut(s)	32, 182, 233
DpnI	GATC	2 cut(s)	18, 106
DpnII	GATC	2 cut(s)	16, 104
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
EciI	GGCGGA	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	234
Eco31I	GGTCTC	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	234
FaeI	CATG	1 cut(s)	132
FaiI	YATR	5 cut(s)	69, 130, 230, 256, 258
FatI	CATG	1 cut(s)	128
FauI	CCCGC	1 cut(s)	4
FauNDI	CATATG	1 cut(s)	256
Fnu4HI	GCNGC	3 cut(s)	30, 140, 180
Fsp4HI	GCNGC	3 cut(s)	30, 140, 180
FspBI	CTAG	1 cut(s)	48
GluI	GCNGC	3 cut(s)	30, 140, 180
HapII	CCGG	1 cut(s)	123
Hin1II	CATG	1 cut(s)	132
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HinfI	GANTC	1 cut(s)	59
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188III	TCNNGA	3 cut(s)	48, 108, 241
Hpy8I	GTNNAC	1 cut(s)	252
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	2 cut(s)	22, 91
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpySE526I	ACGT	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	132
Kzo9I	GATC	2 cut(s)	16, 104
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	5 cut(s)	77, 128, 136, 192, 279
Lsp1109I	GCAGC	2 cut(s)	41, 191
MaeI	CTAG	1 cut(s)	48
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	2 cut(s)	18, 106
MboI	GATC	2 cut(s)	16, 104
MboII	GAAGA	4 cut(s)	167, 176, 212, 296
MflI	RGATCY	1 cut(s)	16
MluCI	AATT	5 cut(s)	64, 82, 225, 244, 291
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	2 cut(s)	44, 286
MseI	TTAA	1 cut(s)	298
MspI	CCGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	1 cut(s)	139
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	2 cut(s)	16, 104
NlaIII	CATG	1 cut(s)	132
PkrI	GCNGC	3 cut(s)	31, 141, 181
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
PsiI	TTATAA	1 cut(s)	69
PsuI	RGATCY	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	298
SatI	GCNGC	3 cut(s)	30, 140, 180
Sau3AI	GATC	2 cut(s)	16, 104
SchI	GAGTC	1 cut(s)	68
SetI	ASST	6 cut(s)	8, 55, 96, 184, 240, 278
Sse9I	AATT	5 cut(s)	64, 82, 225, 244, 291
SsiI	CCGC	4 cut(s)	11, 41, 140, 147
SspMI	CTAG	1 cut(s)	48
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	74
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	1 cut(s)	242
TasI	AATT	5 cut(s)	64, 82, 225, 244, 291
TauI	GCSGC	1 cut(s)	142
Tru1I	TTAA	1 cut(s)	298
Tru9I	TTAA	1 cut(s)	298
TseI	GCWGC	2 cut(s)	29, 179
XapI	RAATTY	1 cut(s)	82
XbaI	TCTAGA	1 cut(s)	47
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.