Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0010052

Physical Location & Seq

Genomic Coordinates Reverse (-)

54961538 .. 54964358

Gene Structure 2821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG399000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGAGGATCTGCCCTCCGGTTACCGTCCCAACGTCGGCGTTTGCCTCATTAACTCCGATAATCTCATTTTTGTTGGATCAAGATTGAATGTTCCCGGAGCATGGCAGATGCCTCAGGGCGGTATTGAAGATGGCGAAGAACCCAAATCAGCAGCTGTTAGGGAACTACGAGAAGAGACTGGGGTAGTGTCTGCTGAAATTATAGCTGAGGTTCCAAAGTGGTTGACATACGACTTCCCACCTGCCGTGAAGACCAAAGTTAATCGTCTCTGGGGAGGTGAATGGCATGGGCAAGCACAAAAATGGCATGTTGTTCTTCCTTCACATGCACACACTTTATTTAAGACCTGCCTTCTTAAGCTTGCAACTTGTCTGCCAAAACTCCTTTCTCTGCTTCTGTCTGGACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004081 GO:0004551 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008796 GO:0008893 GO:0009056 GO:0009058 GO:0009117 GO:0009166 GO:0009987 GO:0015959 GO:0015961 GO:0015965 GO:0015967 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042578 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0046434 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

136

Amino Acids

14.98

Weight (kDa)

6.41

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	8 - 98	5.7e-17	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30110 AT1G30110
fragaria_vesca	FvH4_4g23240 FvH4_4g32510 FvH4_4g32510 FvH4_4g32510
malus_domestica	MD13G1024600.v1.1 MD16G1027300.v1.1
prunus_persica	Prupe.1G325900_v2.0.a1
pyrus_communis	pycom13g02290 pycom16g02310
rosa_chinensis	RchiOBHm_Chr4g0441391
rosa_laevigata	RLG00000006095
rosa_multiflora	Rmu_sc0005516.1_g000004
rosa_roxburghii	Rroxscaffold_5G00382270
rosa_rugosa	Rorug04G0333000
rosa_samantha	Rh4AG385000 Rh4BG399000 Rh4CG414100 Rh4DG391700
rosa_wichuraiana	Rw4G033240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	250
Acc36I	ACCTGC	2 cut(s)	250, 356
AciI	CCGC	1 cut(s)	120
AclWI	GGATC	2 cut(s)	15, 85
AfiI	CCNNNNNNNGG	3 cut(s)	35, 102, 119
AflII	CTTAAG	1 cut(s)	356
AgsI	TTSAA	2 cut(s)	88, 128
AjuI	GAANNNNNNNTTGG	2 cut(s)	370, 402
AluBI	AGCT	3 cut(s)	155, 206, 361
AluI	AGCT	3 cut(s)	155, 206, 361
Alw26I	GTCTC	2 cut(s)	170, 272
AlwI	GGATC	2 cut(s)	15, 85
AlwNI	CAGNNNCTG	1 cut(s)	155
ApeKI	GCWGC	1 cut(s)	152
AsuC2I	CCSGG	1 cut(s)	96
AsuHPI	GGTGA	1 cut(s)	290
AxyI	CCTNAGG	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	257
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	164
BccI	CCATC	1 cut(s)	125
BceAI	ACGGC	1 cut(s)	230
BcnI	CCSGG	1 cut(s)	96
BcoDI	GTCTC	2 cut(s)	170, 272
BfrI	CTTAAG	1 cut(s)	356
BfuAI	ACCTGC	2 cut(s)	250, 356
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
Bme1390I	CCNGG	1 cut(s)	96
BmiI	GGNNCC	1 cut(s)	213
BmrFI	CCNGG	1 cut(s)	96
BmrI	ACTGGG	1 cut(s)	189
BmsI	GCATC	1 cut(s)	99
BmuI	ACTGGG	1 cut(s)	189
BpiI	GAAGAC	1 cut(s)	257
Bpu10I	CCTNAGC	1 cut(s)	207
BpuMI	CCSGG	1 cut(s)	96
BsaWI	WCCGGW	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 102, 119
Bse1I	ACTGG	1 cut(s)	184
Bse21I	CCTNAGG	1 cut(s)	114
BseLI	CCNNNNNNNGG	3 cut(s)	35, 102, 119
BseMII	CTCAG	2 cut(s)	128, 198
BseNI	ACTGG	1 cut(s)	184
BseXI	GCAGC	1 cut(s)	164
BsiSI	CCGG	2 cut(s)	18, 96
BslFI	GGGAC	1 cut(s)	12
BslI	CCNNNNNNNGG	3 cut(s)	35, 102, 119
BsmAI	GTCTC	2 cut(s)	170, 272
BsmBI	CGTCTC	1 cut(s)	272
BsmFI	GGGAC	1 cut(s)	12
Bsp143I	GATC	2 cut(s)	7, 77
BspACI	CCGC	1 cut(s)	120
BspCNI	CTCAG	2 cut(s)	127, 199
BspLI	GGNNCC	1 cut(s)	213
BspMI	ACCTGC	2 cut(s)	250, 356
BspPI	GGATC	2 cut(s)	15, 85
BspTI	CTTAAG	1 cut(s)	356
BsrI	ACTGG	1 cut(s)	184
BssMI	GATC	2 cut(s)	7, 77
Bst4CI	ACNGT	1 cut(s)	26
Bst6I	CTCTTC	1 cut(s)	168
BstAFI	CTTAAG	1 cut(s)	356
BstC8I	GCNNGC	2 cut(s)	294, 363
BstDEI	CTNAG	2 cut(s)	114, 207
BstEII	GGTNACC	1 cut(s)	20
BstKTI	GATC	2 cut(s)	10, 80
BstMAI	GTCTC	2 cut(s)	170, 272
BstMBI	GATC	2 cut(s)	7, 77
BstNSI	RCATGY	2 cut(s)	311, 329
BstPI	GGTNACC	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	164
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
Bsu36I	CCTNAGG	1 cut(s)	114
BveI	ACCTGC	2 cut(s)	250, 356
Cac8I	GCNNGC	2 cut(s)	294, 363
CaiI	CAGNNNCTG	1 cut(s)	155
CviAII	CATG	4 cut(s)	102, 287, 308, 326
CviJI	RGCY	3 cut(s)	155, 206, 361
CviKI_1	RGCY	3 cut(s)	155, 206, 361
DdeI	CTNAG	2 cut(s)	114, 207
DpnI	GATC	2 cut(s)	9, 79
DpnII	GATC	2 cut(s)	7, 77
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Eco81I	CCTNAGG	1 cut(s)	114
Eco91I	GGTNACC	1 cut(s)	20
EcoO65I	GGTNACC	1 cut(s)	20
Esp3I	CGTCTC	1 cut(s)	272
FaeI	CATG	4 cut(s)	105, 290, 311, 329
FaiI	YATR	7 cut(s)	103, 203, 229, 288, 309, 327, 409
FaqI	GGGAC	1 cut(s)	12
FatI	CATG	4 cut(s)	101, 286, 307, 325
Fnu4HI	GCNGC	1 cut(s)	153
Fsp4HI	GCNGC	1 cut(s)	153
GluI	GCNGC	1 cut(s)	153
HapII	CCGG	2 cut(s)	18, 96
Hin1II	CATG	4 cut(s)	105, 290, 311, 329
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HindIII	AAGCTT	1 cut(s)	359
HpaII	CCGG	2 cut(s)	18, 96
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	1 cut(s)	58
Hpy188III	TCNNGA	2 cut(s)	81, 402
Hpy8I	GTNNAC	1 cut(s)	225
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	2 cut(s)	330, 362
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	2 cut(s)	329, 365
HpyF3I	CTNAG	2 cut(s)	114, 207
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	4 cut(s)	105, 290, 311, 329
Kzo9I	GATC	2 cut(s)	7, 77
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	8 cut(s)	31, 101, 109, 165, 255, 256, 361, 387
Lsp1109I	GCAGC	1 cut(s)	164
LweI	GCATC	1 cut(s)	99
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	2 cut(s)	9, 79
MboI	GATC	2 cut(s)	7, 77
MboII	GAAGA	5 cut(s)	140, 149, 185, 262, 308
MflI	RGATCY	1 cut(s)	7
MluCI	AATT	1 cut(s)	198
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	5 cut(s)	25, 56, 123, 202, 269
MseI	TTAA	4 cut(s)	51, 261, 342, 357
MslI	CAYNNNNRTG	1 cut(s)	301
MspA1I	CMGCKG	1 cut(s)	155
MspCI	CTTAAG	1 cut(s)	356
MspI	CCGG	2 cut(s)	18, 96
MspR9I	CCNGG	1 cut(s)	96
NciI	CCSGG	1 cut(s)	96
NdeII	GATC	2 cut(s)	7, 77
NlaIII	CATG	4 cut(s)	105, 290, 311, 329
NlaIV	GGNNCC	1 cut(s)	213
NspI	RCATGY	2 cut(s)	311, 329
PaqCI	CACCTGC	1 cut(s)	250
PfoI	TCCNGGA	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	154
PspEI	GGTNACC	1 cut(s)	20
PspN4I	GGNNCC	1 cut(s)	213
PstNI	CAGNNNCTG	1 cut(s)	155
PsuI	RGATCY	1 cut(s)	7
PvuII	CAGCTG	1 cut(s)	155
RseI	CAYNNNNRTG	1 cut(s)	301
SaqAI	TTAA	4 cut(s)	51, 261, 342, 357
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	2 cut(s)	7, 77
ScrFI	CCNGG	1 cut(s)	96
SetI	ASST	8 cut(s)	36, 157, 208, 213, 244, 280, 350, 363
SfaNI	GCATC	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	301
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	1 cut(s)	198
SsiI	CCGC	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	26
TaiI	ACGT	1 cut(s)	36
TasI	AATT	1 cut(s)	198
Tru1I	TTAA	4 cut(s)	51, 261, 342, 357
Tru9I	TTAA	4 cut(s)	51, 261, 342, 357
TseI	GCWGC	1 cut(s)	152
Vha464I	CTTAAG	1 cut(s)	356
XceI	RCATGY	2 cut(s)	311, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.