pycom13g02290

Belongs to the Nudix hydrolase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
1590172 .. 1592003
1832 bp
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UTR
Exon/CDS
Intron
pycom13g02290.4

Sequence Viewer

Length: 528 bp
ATGGACGATCTGCCGCCTGGTTATCGTCCCAACGTTGGCGTTTGCCTCATTAACTCCGATAATCTGATTTTCGTTGGATCAAGATTAAATGTTCCGGGTGCATGGCAGATGCCTCAGGGGGGTATCGAAGATGGCGAAGAACCCAAAAACGCAGCTATTAGGGAATTACGAGAAGAGACAGGGATAGAGTCTGCTGAAATTATTGCTGAGGTTCCGAATTGGCTAACTTATGACTTCCCACCTGCCGTGAAGACCAAAGTTAATCGTCTATGGGGAGGTGAATGGCACGGGCAAGCACAAAAATGGTTTCTTATGAGGTTCACCAAAAATGAGAGCGAGATCAATCATTTCTTAGCTAATGGGGCAGCTGATCCAGAATTTGCAGAGTGGAAATGGGCTACCCCTGAAGAAGTTATCGAGCAGGCAGTGGACTACAAGAGGCCAACGTACGAGGAAGTGATGAAGACCTTCCAGTCCTACTTTGACGGAAGTAGTTTATCTGCGAAATGTAAATCGACAAAATGGTGA

Protein Analysis

176

Amino Acids

19.93

Weight (kDa)

4.8

Isoelectric Point (pI)

50.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010052)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 250
AasI GACNNNNNNGTC 1 cut(s) 472
Acc36I ACCTGC 1 cut(s) 250
AciI CCGC 1 cut(s) 14
AclI AACGTT 1 cut(s) 33
AclWI GGATC 2 cut(s) 85, 365
AcsI RAATTY 1 cut(s) 377
AcuI CTGAAG 1 cut(s) 426
AfaI GTAC 1 cut(s) 449
AfiI CCNNNNNNNGG 2 cut(s) 35, 119
AjnI CCWGG 1 cut(s) 16
AluBI AGCT 3 cut(s) 155, 356, 368
AluI AGCT 3 cut(s) 155, 356, 368
Alw26I GTCTC 1 cut(s) 170
AlwI GGATC 2 cut(s) 85, 365
AoxI GGCC 1 cut(s) 440
ApeKI GCWGC 2 cut(s) 152, 365
ApoI RAATTY 1 cut(s) 377
Asp700I GAANNNNTTC 1 cut(s) 467
AsuC2I CCSGG 1 cut(s) 96
AsuHPI GGTGA 2 cut(s) 290, 313
AxyI CCTNAGG 1 cut(s) 114
BbsI GAAGAC 2 cut(s) 257, 470
BbvCI CCTCAGC 1 cut(s) 207
BbvI GCAGC 2 cut(s) 164, 377
BccI CCATC 1 cut(s) 125
BceAI ACGGC 1 cut(s) 230
BciT130I CCWGG 1 cut(s) 18
BcnI CCSGG 1 cut(s) 96
BcoDI GTCTC 1 cut(s) 170
BfuAI ACCTGC 1 cut(s) 250
BisI GCNGC 3 cut(s) 14, 153, 366
BlsI GCNGC 3 cut(s) 15, 154, 367
Bme1390I CCNGG 2 cut(s) 18, 96
BmiI GGNNCC 1 cut(s) 213
BmrFI CCNGG 2 cut(s) 18, 96
BmsI GCATC 1 cut(s) 99
BpiI GAAGAC 2 cut(s) 257, 470
Bpu10I CCTNAGC 1 cut(s) 207
BpuMI CCSGG 1 cut(s) 96
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 119
Bse1I ACTGG 1 cut(s) 472
Bse21I CCTNAGG 1 cut(s) 114
BseBI CCWGG 1 cut(s) 18
BseLI CCNNNNNNNGG 2 cut(s) 35, 119
BseMII CTCAG 2 cut(s) 128, 198
BseNI ACTGG 1 cut(s) 472
BseXI GCAGC 2 cut(s) 164, 377
BshFI GGCC 1 cut(s) 442
BsiSI CCGG 1 cut(s) 95
BsiWI CGTACG 1 cut(s) 447
BslFI GGGAC 1 cut(s) 12
BslI CCNNNNNNNGG 2 cut(s) 35, 119
BsmAI GTCTC 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 12
BsnI GGCC 1 cut(s) 442
Bsp143I GATC 4 cut(s) 7, 77, 339, 370
BspACI CCGC 1 cut(s) 14
BspANI GGCC 1 cut(s) 442
BspCNI CTCAG 2 cut(s) 127, 199
BspLI GGNNCC 1 cut(s) 213
BspMI ACCTGC 1 cut(s) 250
BspPI GGATC 2 cut(s) 85, 365
BsrI ACTGG 1 cut(s) 472
BssMI GATC 4 cut(s) 7, 77, 339, 370
Bst2UI CCWGG 1 cut(s) 18
Bst6I CTCTTC 1 cut(s) 168
BstC8I GCNNGC 2 cut(s) 294, 423
BstDEI CTNAG 3 cut(s) 114, 207, 352
BstKTI GATC 4 cut(s) 10, 80, 342, 373
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 4 cut(s) 7, 77, 339, 370
BstMWI GCNNNNNNNGC 1 cut(s) 362
BstNI CCWGG 1 cut(s) 18
BstSCI CCNGG 2 cut(s) 16, 94
BstV1I GCAGC 2 cut(s) 164, 377
BstV2I GAAGAC 2 cut(s) 257, 470
Bsu36I CCTNAGG 1 cut(s) 114
BsuRI GGCC 1 cut(s) 442
BtsI GCAGTG 1 cut(s) 432
BtsIMutI CAGTG 1 cut(s) 432
BveI ACCTGC 1 cut(s) 250
Cac8I GCNNGC 2 cut(s) 294, 423
Csp6I GTAC 1 cut(s) 448
CviAII CATG 1 cut(s) 102
CviJI RGCY 6 cut(s) 155, 223, 356, 368, 398, 442
CviKI_1 RGCY 6 cut(s) 155, 223, 356, 368, 398, 442
CviQI GTAC 1 cut(s) 448
DdeI CTNAG 3 cut(s) 114, 207, 352
DpnI GATC 4 cut(s) 9, 79, 341, 372
DpnII GATC 4 cut(s) 7, 77, 339, 370
DrdI GACNNNNNNGTC 1 cut(s) 472
DseDI GACNNNNNNGTC 1 cut(s) 472
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco57I CTGAAG 1 cut(s) 426
Eco81I CCTNAGG 1 cut(s) 114
EcoRII CCWGG 1 cut(s) 16
FaeI CATG 1 cut(s) 105
FaiI YATR 4 cut(s) 103, 231, 271, 314
FaqI GGGAC 1 cut(s) 12
FatI CATG 1 cut(s) 101
Fnu4HI GCNGC 3 cut(s) 14, 153, 366
Fsp4HI GCNGC 3 cut(s) 14, 153, 366
GluI GCNGC 3 cut(s) 14, 153, 366
HaeIII GGCC 1 cut(s) 442
HapII CCGG 1 cut(s) 95
Hin1II CATG 1 cut(s) 105
HinfI GANTC 1 cut(s) 188
HpaII CCGG 1 cut(s) 95
HphI GGTGA 2 cut(s) 290, 313
Hpy166II GTNNAC 2 cut(s) 321, 430
Hpy188I TCNGA 3 cut(s) 58, 66, 216
Hpy188III TCNNGA 2 cut(s) 81, 374
Hpy8I GTNNAC 2 cut(s) 321, 430
HpyAV CCTTC 1 cut(s) 478
HpyCH4IV ACGT 2 cut(s) 33, 446
HpyCH4V TGCA 2 cut(s) 101, 383
HpyF10VI GCNNNNNNNGC 1 cut(s) 362
HpyF3I CTNAG 3 cut(s) 114, 207, 352
HpySE526I ACGT 2 cut(s) 33, 446
Hsp92II CATG 1 cut(s) 105
Kzo9I GATC 4 cut(s) 7, 77, 339, 370
Lsp1109I GCAGC 2 cut(s) 164, 377
LweI GCATC 1 cut(s) 99
MaeII ACGT 2 cut(s) 33, 446
MalI GATC 4 cut(s) 9, 79, 341, 372
MboI GATC 4 cut(s) 7, 77, 339, 370
MboII GAAGA 6 cut(s) 140, 149, 185, 262, 419, 475
MluCI AATT 4 cut(s) 164, 198, 217, 377
MlyI GAGTC 1 cut(s) 197
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 7 cut(s) 56, 123, 202, 269, 309, 432, 445
MroXI GAANNNNTTC 1 cut(s) 467
MseI TTAA 3 cut(s) 51, 86, 261
MslI CAYNNNNRTG 1 cut(s) 301
MspA1I CMGCKG 1 cut(s) 368
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 2 cut(s) 18, 96
MvaI CCWGG 1 cut(s) 18
MwoI GCNNNNNNNGC 1 cut(s) 362
NciI CCSGG 1 cut(s) 96
NdeII GATC 4 cut(s) 7, 77, 339, 370
NlaIII CATG 1 cut(s) 105
NlaIV GGNNCC 1 cut(s) 213
PaqCI CACCTGC 1 cut(s) 250
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PdmI GAANNNNTTC 1 cut(s) 467
Pfl23II CGTACG 1 cut(s) 447
PkrI GCNGC 3 cut(s) 15, 154, 367
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
Psp1406I AACGTT 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 16
PspGI CCWGG 1 cut(s) 16
PspLI CGTACG 1 cut(s) 447
PspN4I GGNNCC 1 cut(s) 213
PvuII CAGCTG 1 cut(s) 368
RsaI GTAC 1 cut(s) 449
RsaNI GTAC 1 cut(s) 448
RseI CAYNNNNRTG 1 cut(s) 301
SaqAI TTAA 3 cut(s) 51, 86, 261
SatI GCNGC 3 cut(s) 14, 153, 366
Sau3AI GATC 4 cut(s) 7, 77, 339, 370
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 2 cut(s) 18, 96
SfaNI GCATC 1 cut(s) 99
SmiMI CAYNNNNRTG 1 cut(s) 301
Sse9I AATT 4 cut(s) 164, 198, 217, 377
SsiI CCGC 1 cut(s) 14
StyD4I CCNGG 2 cut(s) 16, 94
TaiI ACGT 2 cut(s) 36, 449
TaqI TCGA 3 cut(s) 126, 417, 515
TasI AATT 4 cut(s) 164, 198, 217, 377
TauI GCSGC 1 cut(s) 16
Tru1I TTAA 3 cut(s) 51, 86, 261
Tru9I TTAA 3 cut(s) 51, 86, 261
TscAI CASTG 1 cut(s) 432
TseI GCWGC 2 cut(s) 152, 365
TspDTI ATGAA 1 cut(s) 476
TspGWI ACGGA 1 cut(s) 501
TspRI CASTG 1 cut(s) 432
XapI RAATTY 1 cut(s) 377
XmnI GAANNNNTTC 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.