Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0010052

Physical Location & Seq

Genomic Coordinates Reverse (-)

60767500 .. 60769921

Gene Structure 2422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG391700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGAGGATCTGCCCTCCGGTTACCGTCCCAACGTCGGCGTTTGCCTCATTAACTCCGATAATCTGATTTTTGTTGGATCAAGATTGAATGTTCCCGGAGCATGGCAGATGCCTCAGGTTCCAAATTGGTTGACATATGACTTCCCACCTGCCGTGAAGACCAAAGTTAATCGTCTCTGGGGAGGTGAATGGCATGGGCAAGCACAAAAATGGTTTCTTATGAGATTCACAAATGATGAGAGTGAGATCAACTTAGCTACTGGGGAAGCTGATGCAGAGTTTGCAGAGTGGAAATGGGCGAGCCCTGAAGAAGTTATCGAGCAGGCAGTGGACTACAAGAGGCCAACATATGAGGAAGTTATGAAGACCTTCAAGTCGTACTTGGACGGAAGTGGATTATCTGCAAAATGTAAATCAACAAAATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004081 GO:0004551 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008796 GO:0008893 GO:0009056 GO:0009058 GO:0009117 GO:0009166 GO:0009987 GO:0015959 GO:0015961 GO:0015965 GO:0015967 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042578 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0046434 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

142

Amino Acids

16.27

Weight (kDa)

5.04

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30110 AT1G30110
fragaria_vesca	FvH4_4g23240 FvH4_4g32510 FvH4_4g32510 FvH4_4g32510
malus_domestica	MD13G1024600.v1.1 MD16G1027300.v1.1
prunus_persica	Prupe.1G325900_v2.0.a1
pyrus_communis	pycom13g02290 pycom16g02310
rosa_chinensis	RchiOBHm_Chr4g0441391
rosa_laevigata	RLG00000006095
rosa_multiflora	Rmu_sc0005516.1_g000004
rosa_roxburghii	Rroxscaffold_5G00382270
rosa_rugosa	Rorug04G0333000
rosa_samantha	Rh4AG385000 Rh4BG399000 Rh4CG414100 Rh4DG391700
rosa_wichuraiana	Rw4G033240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	157
AasI	GACNNNNNNGTC	1 cut(s)	373
Acc36I	ACCTGC	1 cut(s)	157
AclWI	GGATC	2 cut(s)	15, 85
AcuI	CTGAAG	1 cut(s)	327
AfaI	GTAC	1 cut(s)	380
AfiI	CCNNNNNNNGG	2 cut(s)	35, 102
AgsI	TTSAA	2 cut(s)	88, 373
AluBI	AGCT	2 cut(s)	257, 269
AluI	AGCT	2 cut(s)	257, 269
Alw26I	GTCTC	1 cut(s)	179
AlwI	GGATC	2 cut(s)	15, 85
AoxI	GGCC	1 cut(s)	341
Asp700I	GAANNNNTTC	1 cut(s)	368
AsuC2I	CCSGG	1 cut(s)	96
AsuHPI	GGTGA	1 cut(s)	197
AxyI	CCTNAGG	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	305
BbsI	GAAGAC	2 cut(s)	164, 371
BceAI	ACGGC	1 cut(s)	137
BcnI	CCSGG	1 cut(s)	96
BcoDI	GTCTC	1 cut(s)	179
BfuAI	ACCTGC	1 cut(s)	157
Bme1390I	CCNGG	1 cut(s)	96
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	96
BmrI	ACTGGG	1 cut(s)	270
BmsI	GCATC	2 cut(s)	99, 262
BmuI	ACTGGG	1 cut(s)	270
BpiI	GAAGAC	2 cut(s)	164, 371
BpuMI	CCSGG	1 cut(s)	96
BsaWI	WCCGGW	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 102
Bse1I	ACTGG	1 cut(s)	265
Bse21I	CCTNAGG	1 cut(s)	114
BseLI	CCNNNNNNNGG	2 cut(s)	35, 102
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	265
BshFI	GGCC	1 cut(s)	343
BsiSI	CCGG	2 cut(s)	18, 96
BslFI	GGGAC	1 cut(s)	12
BslI	CCNNNNNNNGG	2 cut(s)	35, 102
BsmAI	GTCTC	1 cut(s)	179
BsmBI	CGTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	12
BsnI	GGCC	1 cut(s)	343
Bsp1286I	GDGCHC	1 cut(s)	305
Bsp143I	GATC	3 cut(s)	7, 77, 246
BspANI	GGCC	1 cut(s)	343
BspCNI	CTCAG	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	120
BspMI	ACCTGC	1 cut(s)	157
BspPI	GGATC	2 cut(s)	15, 85
BsrI	ACTGG	1 cut(s)	265
BssMI	GATC	3 cut(s)	7, 77, 246
Bst4CI	ACNGT	1 cut(s)	26
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstC8I	GCNNGC	3 cut(s)	201, 301, 324
BstDEI	CTNAG	2 cut(s)	114, 253
BstEII	GGTNACC	1 cut(s)	20
BstKTI	GATC	3 cut(s)	10, 80, 249
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	3 cut(s)	7, 77, 246
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstPI	GGTNACC	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	94
BstV2I	GAAGAC	2 cut(s)	164, 371
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
Bsu36I	CCTNAGG	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	343
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	1 cut(s)	333
BveI	ACCTGC	1 cut(s)	157
Cac8I	GCNNGC	3 cut(s)	201, 301, 324
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	2 cut(s)	102, 194
CviJI	RGCY	4 cut(s)	257, 269, 303, 343
CviKI_1	RGCY	4 cut(s)	257, 269, 303, 343
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	2 cut(s)	114, 253
DpnI	GATC	3 cut(s)	9, 79, 248
DpnII	GATC	3 cut(s)	7, 77, 246
DrdI	GACNNNNNNGTC	1 cut(s)	373
DseDI	GACNNNNNNGTC	1 cut(s)	373
Eco24I	GRGCYC	1 cut(s)	305
Eco57I	CTGAAG	1 cut(s)	327
Eco81I	CCTNAGG	1 cut(s)	114
Eco91I	GGTNACC	1 cut(s)	20
EcoO65I	GGTNACC	1 cut(s)	20
EcoT38I	GRGCYC	1 cut(s)	305
Esp3I	CGTCTC	1 cut(s)	179
FaeI	CATG	2 cut(s)	105, 197
FaiI	YATR	8 cut(s)	103, 136, 138, 195, 221, 349, 351, 362
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FaqI	GGGAC	1 cut(s)	12
FatI	CATG	2 cut(s)	101, 193
FauNDI	CATATG	2 cut(s)	136, 349
FriOI	GRGCYC	1 cut(s)	305
HaeIII	GGCC	1 cut(s)	343
HapII	CCGG	2 cut(s)	18, 96
Hin1II	CATG	2 cut(s)	105, 197
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HinfI	GANTC	1 cut(s)	225
HpaII	CCGG	2 cut(s)	18, 96
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	2 cut(s)	132, 331
Hpy188I	TCNGA	2 cut(s)	58, 66
Hpy188III	TCNNGA	1 cut(s)	81
Hpy8I	GTNNAC	2 cut(s)	132, 331
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	1 cut(s)	379
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	3 cut(s)	275, 284, 404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	2 cut(s)	114, 253
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	105, 197
Kzo9I	GATC	3 cut(s)	7, 77, 246
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	8 cut(s)	31, 101, 109, 162, 163, 246, 308, 318
LweI	GCATC	2 cut(s)	99, 262
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	3 cut(s)	9, 79, 248
MboI	GATC	3 cut(s)	7, 77, 246
MboII	GAAGA	3 cut(s)	169, 320, 376
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	1 cut(s)	305
MluCI	AATT	1 cut(s)	124
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	6 cut(s)	25, 56, 123, 176, 333, 346
MroXI	GAANNNNTTC	1 cut(s)	368
MseI	TTAA	2 cut(s)	51, 168
MslI	CAYNNNNRTG	1 cut(s)	208
MspI	CCGG	2 cut(s)	18, 96
MspR9I	CCNGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	281
NciI	CCSGG	1 cut(s)	96
NdeI	CATATG	2 cut(s)	136, 349
NdeII	GATC	3 cut(s)	7, 77, 246
NlaIII	CATG	2 cut(s)	105, 197
NlaIV	GGNNCC	1 cut(s)	120
PaqCI	CACCTGC	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	368
PfeI	GAWTC	1 cut(s)	225
PfoI	TCCNGGA	1 cut(s)	94
PspEI	GGTNACC	1 cut(s)	20
PspN4I	GGNNCC	1 cut(s)	120
PsuI	RGATCY	1 cut(s)	7
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
RseI	CAYNNNNRTG	1 cut(s)	208
SaqAI	TTAA	2 cut(s)	51, 168
Sau3AI	GATC	3 cut(s)	7, 77, 246
ScrFI	CCNGG	1 cut(s)	96
SduI	GDGCHC	1 cut(s)	305
SetI	ASST	7 cut(s)	36, 120, 151, 187, 259, 271, 371
SfaNI	GCATC	2 cut(s)	99, 262
SmiMI	CAYNNNNRTG	1 cut(s)	208
Sse9I	AATT	1 cut(s)	124
StyD4I	CCNGG	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	26
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	1 cut(s)	318
TasI	AATT	1 cut(s)	124
TfiI	GAWTC	1 cut(s)	225
Tru1I	TTAA	2 cut(s)	51, 168
Tru9I	TTAA	2 cut(s)	51, 168
TscAI	CASTG	1 cut(s)	333
TspDTI	ATGAA	1 cut(s)	377
TspGWI	ACGGA	1 cut(s)	402
TspRI	CASTG	1 cut(s)	333
XmnI	GAANNNNTTC	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.