Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0010052

Physical Location & Seq

Genomic Coordinates Forward (+)

50727809 .. 50728734

Gene Structure 926 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0333000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCAATTACTGCCTTTCTGTTCTGGTATTATGTCTATTTAATGCCTGTAACTATGGACATTAGGATTTTCAAACACTATCTCCAGAAAAAGAACTTCGATAACACTCCCTATGTAACTGCACCGCTTTTCATCTCTACTCCCATCCTTCGCTTCCATACTCATGGCCGGTGCAATTGGCGTTTGTATCCCAATTCTAGGGATGATTCCGTCTTTGCAACCGGAGAAGAATATCTTCTTCATCATCAAGGCCTTTGCCTCTGGTGTCATATTGGCCACCAGATTTATCCACATGCTTCCGGACTCTTTCGACTACTTGACCTCACCGTGCCTGAAAGAAAACCCATAGGGGAAATTACCCTTCACCGCCATCGAAACTTTGATGGTGGATTCCATATATCAATTGCTACTTCTTATTTCAAAAAGGCTCAGAATCAGATCAATGGAGAGCATGAGGGGCACATACATGTTCATACACATGCCACTCATGGTTCGCTTGATACGAATTCGGCTGAATCACAACTTCTTGGGCACAGAGTGATTTCAAAGGTTTTGGAGTTGGGAATTGTGGTGCACTCAGTTAATATTGGAATTTCATTGGGTGCTTCTGAAGGTGCTGAAACAATTCGACCTCTTCTAGTTGCTTTGACTTTCCATCAAGTTTTTGAAGGCAGGGCCATGGGACTTGGTGGTTGCATAGCTCAGGCAATTTCTCCCCCAATTACTGACGGTCTGTATAGTCTGTGGCCTTCTTTAGTACCAAGTCAGTATCAGCATCTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004081 GO:0004551 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008796 GO:0008893 GO:0009056 GO:0009058 GO:0009117 GO:0009166 GO:0009987 GO:0015959 GO:0015961 GO:0015965 GO:0015967 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042578 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0046434 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

261

Amino Acids

29.45

Weight (kDa)

7.37

Isoelectric Point (pI)

35.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	144 - 240	1.1e-16	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30110 AT1G30110
fragaria_vesca	FvH4_4g23240 FvH4_4g32510 FvH4_4g32510 FvH4_4g32510
malus_domestica	MD13G1024600.v1.1 MD16G1027300.v1.1
prunus_persica	Prupe.1G325900_v2.0.a1
pyrus_communis	pycom13g02290 pycom16g02310
rosa_chinensis	RchiOBHm_Chr4g0441391
rosa_laevigata	RLG00000006095
rosa_multiflora	Rmu_sc0005516.1_g000004
rosa_roxburghii	Rroxscaffold_5G00382270
rosa_rugosa	Rorug04G0333000
rosa_samantha	Rh4AG385000 Rh4BG399000 Rh4CG414100 Rh4DG391700
rosa_wichuraiana	Rw4G033240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	299
AciI	CCGC	2 cut(s)	125, 367
AcoI	YGGCCR	2 cut(s)	166, 274
AcsI	RAATTY	2 cut(s)	505, 591
AcuI	CTGAAG	1 cut(s)	630
AdeI	CACNNNGTG	1 cut(s)	538
AfaI	GTAC	1 cut(s)	759
AfiI	CCNNNNNNNGG	1 cut(s)	198
AflIII	ACRYGT	1 cut(s)	466
AgsI	TTSAA	4 cut(s)	73, 421, 546, 668
AluBI	AGCT	1 cut(s)	701
AluI	AGCT	1 cut(s)	701
Alw21I	GWGCWC	1 cut(s)	576
Alw44I	GTGCAC	1 cut(s)	572
AlwNI	CAGNNNCTG	1 cut(s)	778
Aor13HI	TCCGGA	1 cut(s)	299
AoxI	GGCC	5 cut(s)	166, 250, 274, 675, 746
ApaLI	GTGCAC	1 cut(s)	572
ApoI	RAATTY	2 cut(s)	505, 591
Asp700I	GAANNNNTTC	2 cut(s)	234, 624
AspS9I	GGNCC	1 cut(s)	675
AsuHPI	GGTGA	2 cut(s)	316, 356
BaeGI	GKGCMC	3 cut(s)	462, 534, 576
BalI	TGGCCA	1 cut(s)	276
Bbv12I	GWGCWC	1 cut(s)	576
BccI	CCATC	4 cut(s)	152, 377, 378, 663
BciVI	GTATCC	1 cut(s)	198
BfaI	CTAG	2 cut(s)	198, 638
BfuI	GTATCC	1 cut(s)	198
BmgT120I	GGNCC	1 cut(s)	675
BpmI	CTGGAG	1 cut(s)	68
Bpu10I	CCTNAGC	1 cut(s)	702
BsaJI	CCNNGG	1 cut(s)	678
BsaWI	WCCGGW	2 cut(s)	221, 299
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bsc4I	CCNNNNNNNGG	1 cut(s)	198
Bse118I	RCCGGY	1 cut(s)	168
BseAI	TCCGGA	1 cut(s)	299
BseDI	CCNNGG	1 cut(s)	678
BseGI	GGATG	2 cut(s)	144, 208
BseLI	CCNNNNNNNGG	1 cut(s)	198
BseMII	CTCAG	3 cut(s)	443, 591, 716
BseSI	GKGCMC	3 cut(s)	462, 534, 576
BsgI	GTGCAG	1 cut(s)	105
BshFI	GGCC	5 cut(s)	168, 252, 276, 677, 748
BsiHKAI	GWGCWC	1 cut(s)	576
BsiSI	CCGG	3 cut(s)	169, 222, 300
BslFI	GGGAC	1 cut(s)	696
BslI	CCNNNNNNNGG	1 cut(s)	198
BsmFI	GGGAC	1 cut(s)	696
BsnI	GGCC	5 cut(s)	168, 252, 276, 677, 748
Bsp1286I	GDGCHC	3 cut(s)	462, 534, 576
Bsp13I	TCCGGA	1 cut(s)	299
Bsp143I	GATC	1 cut(s)	438
Bsp19I	CCATGG	1 cut(s)	678
BspACI	CCGC	2 cut(s)	125, 367
BspANI	GGCC	5 cut(s)	168, 252, 276, 677, 748
BspCNI	CTCAG	3 cut(s)	442, 590, 715
BspEI	TCCGGA	1 cut(s)	299
BsrFI	RCCGGY	1 cut(s)	168
BssAI	RCCGGY	1 cut(s)	168
BssECI	CCNNGG	1 cut(s)	678
BssMI	GATC	1 cut(s)	438
BssT1I	CCWWGG	1 cut(s)	678
Bst4CI	ACNGT	2 cut(s)	328, 731
Bst6I	CTCTTC	1 cut(s)	639
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstDEI	CTNAG	4 cut(s)	429, 577, 702, 783
BstDSI	CCRYGG	1 cut(s)	678
BstF5I	GGATG	2 cut(s)	144, 208
BstKTI	GATC	1 cut(s)	441
BstMBI	GATC	1 cut(s)	438
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 457
BstNSI	RCATGY	3 cut(s)	296, 470, 482
BstSLI	GKGCMC	3 cut(s)	462, 534, 576
BstXI	CCANNNNNNTGG	1 cut(s)	164
BsuI	GTATCC	1 cut(s)	198
BsuRI	GGCC	5 cut(s)	168, 252, 276, 677, 748
BtgI	CCRYGG	1 cut(s)	678
BtsCI	GGATG	2 cut(s)	144, 208
CaiI	CAGNNNCTG	1 cut(s)	778
Cfr10I	RCCGGY	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	675
Csp6I	GTAC	1 cut(s)	758
CviAII	CATG	7 cut(s)	164, 293, 452, 467, 479, 488, 679
CviJI	RGCY	9 cut(s)	168, 252, 276, 428, 512, 677, 701, 748, 782
CviKI_1	RGCY	9 cut(s)	168, 252, 276, 428, 512, 677, 701, 748, 782
CviQI	GTAC	1 cut(s)	758
DdeI	CTNAG	4 cut(s)	429, 577, 702, 783
DpnI	GATC	1 cut(s)	440
DpnII	GATC	1 cut(s)	438
DraIII	CACNNNGTG	1 cut(s)	538
EaeI	YGGCCR	2 cut(s)	166, 274
Eam1104I	CTCTTC	1 cut(s)	639
EarI	CTCTTC	1 cut(s)	639
Eco130I	CCWWGG	1 cut(s)	678
Eco147I	AGGCCT	1 cut(s)	252
Eco57I	CTGAAG	1 cut(s)	630
EcoRI	GAATTC	1 cut(s)	505
EcoT14I	CCWWGG	1 cut(s)	678
ErhI	CCWWGG	1 cut(s)	678
FaeI	CATG	7 cut(s)	167, 296, 455, 470, 482, 491, 682
FalI	AAGNNNNNCTT	2 cut(s)	219, 251
FaqI	GGGAC	1 cut(s)	696
FatI	CATG	7 cut(s)	163, 292, 451, 466, 478, 487, 678
FokI	GGATG	2 cut(s)	131, 215
FspBI	CTAG	2 cut(s)	198, 638
GsuI	CTGGAG	1 cut(s)	68
HaeIII	GGCC	5 cut(s)	168, 252, 276, 677, 748
HapII	CCGG	3 cut(s)	169, 222, 300
Hin1II	CATG	7 cut(s)	167, 296, 455, 470, 482, 491, 682
HinfI	GANTC	5 cut(s)	206, 303, 390, 433, 515
HpaII	CCGG	3 cut(s)	169, 222, 300
HphI	GGTGA	2 cut(s)	316, 356
Hpy166II	GTNNAC	1 cut(s)	574
Hpy188I	TCNGA	3 cut(s)	432, 438, 610
Hpy188III	TCNNGA	2 cut(s)	85, 300
Hpy8I	GTNNAC	1 cut(s)	574
HpyAV	CCTTC	5 cut(s)	158, 371, 605, 662, 759
HpyCH4III	ACNGT	2 cut(s)	328, 731
HpyCH4V	TGCA	5 cut(s)	122, 174, 218, 574, 696
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 457
HpyF3I	CTNAG	4 cut(s)	429, 577, 702, 783
Hsp92II	CATG	7 cut(s)	167, 296, 455, 470, 482, 491, 682
Kpn2I	TCCGGA	1 cut(s)	299
Kzo9I	GATC	1 cut(s)	438
MaeI	CTAG	2 cut(s)	198, 638
MaeIII	GTNAC	2 cut(s)	49, 115
MalI	GATC	1 cut(s)	440
MboI	GATC	1 cut(s)	438
MboII	GAAGA	4 cut(s)	227, 230, 239, 626
MfeI	CAATTG	2 cut(s)	175, 402
MhlI	GDGCHC	3 cut(s)	462, 534, 576
MlsI	TGGCCA	1 cut(s)	276
MluNI	TGGCCA	1 cut(s)	276
MlyI	GAGTC	1 cut(s)	297
MnlI	CCTC	4 cut(s)	269, 332, 448, 642
Mox20I	TGGCCA	1 cut(s)	276
MroI	TCCGGA	1 cut(s)	299
MroXI	GAANNNNTTC	2 cut(s)	234, 624
MscI	TGGCCA	1 cut(s)	276
MseI	TTAA	2 cut(s)	41, 582
MslI	CAYNNNNRTG	3 cut(s)	162, 465, 477
Msp20I	TGGCCA	1 cut(s)	276
MspI	CCGG	3 cut(s)	169, 222, 300
MunI	CAATTG	2 cut(s)	175, 402
MwoI	GCNNNNNNNGC	2 cut(s)	11, 457
NcoI	CCATGG	1 cut(s)	678
NdeII	GATC	1 cut(s)	438
NlaIII	CATG	7 cut(s)	167, 296, 455, 470, 482, 491, 682
NspI	RCATGY	3 cut(s)	296, 470, 482
PceI	AGGCCT	1 cut(s)	252
PciI	ACATGT	1 cut(s)	466
PcsI	WCGNNNNNNNCGW	1 cut(s)	500
PdmI	GAANNNNTTC	2 cut(s)	234, 624
PfeI	GAWTC	4 cut(s)	206, 390, 433, 515
PleI	GAGTC	1 cut(s)	297
PpsI	GAGTC	1 cut(s)	297
PscI	ACATGT	1 cut(s)	466
PspPI	GGNCC	1 cut(s)	675
PstNI	CAGNNNCTG	1 cut(s)	778
RsaI	GTAC	1 cut(s)	759
RsaNI	GTAC	1 cut(s)	758
RseI	CAYNNNNRTG	3 cut(s)	162, 465, 477
SaqAI	TTAA	2 cut(s)	41, 582
Sau3AI	GATC	1 cut(s)	438
Sau96I	GGNCC	1 cut(s)	675
SchI	GAGTC	1 cut(s)	297
SduI	GDGCHC	3 cut(s)	462, 534, 576
SetI	ASST	5 cut(s)	324, 552, 616, 634, 703
SmiMI	CAYNNNNRTG	3 cut(s)	162, 465, 477
SseBI	AGGCCT	1 cut(s)	252
SsiI	CCGC	2 cut(s)	125, 367
SspI	AATATT	1 cut(s)	586
SspMI	CTAG	2 cut(s)	198, 638
StuI	AGGCCT	1 cut(s)	252
StyI	CCWWGG	1 cut(s)	678
TaaI	ACNGT	2 cut(s)	328, 731
TaqI	TCGA	4 cut(s)	99, 310, 373, 628
TfiI	GAWTC	4 cut(s)	206, 390, 433, 515
Tru1I	TTAA	2 cut(s)	41, 582
Tru9I	TTAA	2 cut(s)	41, 582
TspDTI	ATGAA	4 cut(s)	121, 230, 461, 585
TspGWI	ACGGA	1 cut(s)	199
VneI	GTGCAC	1 cut(s)	572
XapI	RAATTY	2 cut(s)	505, 591
XceI	RCATGY	3 cut(s)	296, 470, 482
XmnI	GAANNNNTTC	2 cut(s)	234, 624
XspI	CTAG	2 cut(s)	198, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.