Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005516.1

Orthogroup ID

OG0010052

Physical Location & Seq

Genomic Coordinates Forward (+)

18013 .. 20329

Gene Structure 2317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005516.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atgcctcagggcggtattgaagatggcgaagaacccaaatcagctgctgttagggaactacgagaagagactggggtagtgtctgctgaaattatagctgaggttccaaattggttgacatacgacttcccacctgccgtgaagaccaaagttaatcgtctctggggaggtgaatggcatgggcaagcacaaaaatggtttcttatgagattcacaaatgatgagagtgagatcaacttagctactggggaagctgatgcagagtttgcagagtggaaatgggcgagccctgaagaagttattgagcaggcagtggactacaagaggccaacatatgaggaagttatgaagaccttcaagtcatacttggacggaagtggattatctgcaaaatgtaaatcaacaaaatggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004081 GO:0004551 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008796 GO:0008893 GO:0009056 GO:0009058 GO:0009117 GO:0009166 GO:0009987 GO:0015959 GO:0015961 GO:0015965 GO:0015967 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042578 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0046434 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

137

Amino Acids

15.58

Weight (kDa)

4.7

Isoelectric Point (pI)

48.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30110 AT1G30110
fragaria_vesca	FvH4_4g23240 FvH4_4g32510 FvH4_4g32510 FvH4_4g32510
malus_domestica	MD13G1024600.v1.1 MD16G1027300.v1.1
prunus_persica	Prupe.1G325900_v2.0.a1
pyrus_communis	pycom13g02290 pycom16g02310
rosa_chinensis	RchiOBHm_Chr4g0441391
rosa_laevigata	RLG00000006095
rosa_multiflora	Rmu_sc0005516.1_g000004
rosa_roxburghii	Rroxscaffold_5G00382270
rosa_rugosa	Rorug04G0333000
rosa_samantha	Rh4AG385000 Rh4BG399000 Rh4CG414100 Rh4DG391700
rosa_wichuraiana	Rw4G033240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	142
AasI	GACNNNNNNGTC	1 cut(s)	358
Acc36I	ACCTGC	1 cut(s)	142
AciI	CCGC	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	312
AfiI	CCNNNNNNNGG	1 cut(s)	11
AgsI	TTSAA	2 cut(s)	20, 358
AluBI	AGCT	4 cut(s)	44, 98, 242, 254
AluI	AGCT	4 cut(s)	44, 98, 242, 254
Alw26I	GTCTC	2 cut(s)	62, 164
AlwNI	CAGNNNCTG	1 cut(s)	47
AoxI	GGCC	1 cut(s)	326
ApeKI	GCWGC	1 cut(s)	44
Asp700I	GAANNNNTTC	1 cut(s)	353
AsuHPI	GGTGA	1 cut(s)	182
AxyI	CCTNAGG	1 cut(s)	6
BanII	GRGCYC	1 cut(s)	290
BbsI	GAAGAC	2 cut(s)	149, 356
BbvCI	CCTCAGC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	1 cut(s)	17
BceAI	ACGGC	1 cut(s)	122
BcoDI	GTCTC	2 cut(s)	62, 164
BfuAI	ACCTGC	1 cut(s)	142
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
BmiI	GGNNCC	1 cut(s)	105
BmrI	ACTGGG	2 cut(s)	81, 255
BmsI	GCATC	1 cut(s)	247
BmuI	ACTGGG	2 cut(s)	81, 255
BpiI	GAAGAC	2 cut(s)	149, 356
Bpu10I	CCTNAGC	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	1 cut(s)	11
Bse1I	ACTGG	2 cut(s)	76, 250
Bse21I	CCTNAGG	1 cut(s)	6
BseLI	CCNNNNNNNGG	1 cut(s)	11
BseMII	CTCAG	2 cut(s)	20, 90
BseNI	ACTGG	2 cut(s)	76, 250
BseXI	GCAGC	1 cut(s)	31
BshFI	GGCC	1 cut(s)	328
BslI	CCNNNNNNNGG	1 cut(s)	11
BsmAI	GTCTC	2 cut(s)	62, 164
BsmBI	CGTCTC	1 cut(s)	164
BsnI	GGCC	1 cut(s)	328
Bsp1286I	GDGCHC	1 cut(s)	290
Bsp143I	GATC	1 cut(s)	231
BspACI	CCGC	1 cut(s)	12
BspANI	GGCC	1 cut(s)	328
BspCNI	CTCAG	2 cut(s)	19, 91
BspLI	GGNNCC	1 cut(s)	105
BspMI	ACCTGC	1 cut(s)	142
BsrI	ACTGG	2 cut(s)	76, 250
BssMI	GATC	1 cut(s)	231
Bst6I	CTCTTC	1 cut(s)	60
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstC8I	GCNNGC	3 cut(s)	186, 286, 309
BstDEI	CTNAG	3 cut(s)	6, 99, 238
BstKTI	GATC	1 cut(s)	234
BstMAI	GTCTC	2 cut(s)	62, 164
BstMBI	GATC	1 cut(s)	231
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstV1I	GCAGC	1 cut(s)	31
BstV2I	GAAGAC	2 cut(s)	149, 356
Bsu36I	CCTNAGG	1 cut(s)	6
BsuRI	GGCC	1 cut(s)	328
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	318
BveI	ACCTGC	1 cut(s)	142
Cac8I	GCNNGC	3 cut(s)	186, 286, 309
CaiI	CAGNNNCTG	1 cut(s)	47
CviAII	CATG	1 cut(s)	179
CviJI	RGCY	6 cut(s)	44, 98, 242, 254, 288, 328
CviKI_1	RGCY	6 cut(s)	44, 98, 242, 254, 288, 328
DdeI	CTNAG	3 cut(s)	6, 99, 238
DpnI	GATC	1 cut(s)	233
DpnII	GATC	1 cut(s)	231
DrdI	GACNNNNNNGTC	1 cut(s)	358
DseDI	GACNNNNNNGTC	1 cut(s)	358
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	290
Eco57I	CTGAAG	1 cut(s)	312
Eco81I	CCTNAGG	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	290
Esp3I	CGTCTC	1 cut(s)	164
FaeI	CATG	1 cut(s)	182
FaiI	YATR	8 cut(s)	95, 121, 180, 206, 334, 336, 347, 364
FalI	AAGNNNNNCTT	2 cut(s)	350, 382
FatI	CATG	1 cut(s)	178
FauNDI	CATATG	1 cut(s)	334
Fnu4HI	GCNGC	1 cut(s)	45
FriOI	GRGCYC	1 cut(s)	290
Fsp4HI	GCNGC	1 cut(s)	45
GluI	GCNGC	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	328
Hin1II	CATG	1 cut(s)	182
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HinfI	GANTC	1 cut(s)	210
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	2 cut(s)	117, 316
Hpy8I	GTNNAC	2 cut(s)	117, 316
HpyAV	CCTTC	1 cut(s)	364
HpyCH4V	TGCA	3 cut(s)	260, 269, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	3 cut(s)	6, 99, 238
Hsp92II	CATG	1 cut(s)	182
Kzo9I	GATC	1 cut(s)	231
LpnPI	CCDG	6 cut(s)	57, 147, 148, 231, 293, 303
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	1 cut(s)	247
MalI	GATC	1 cut(s)	233
MboI	GATC	1 cut(s)	231
MboII	GAAGA	6 cut(s)	32, 41, 77, 154, 305, 361
MhlI	GDGCHC	1 cut(s)	290
MluCI	AATT	2 cut(s)	90, 109
MnlI	CCTC	5 cut(s)	15, 94, 161, 318, 331
MroXI	GAANNNNTTC	1 cut(s)	353
MseI	TTAA	1 cut(s)	153
MslI	CAYNNNNRTG	1 cut(s)	193
MspA1I	CMGCKG	1 cut(s)	44
MwoI	GCNNNNNNNGC	1 cut(s)	266
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	1 cut(s)	231
NlaIII	CATG	1 cut(s)	182
NlaIV	GGNNCC	1 cut(s)	105
PaqCI	CACCTGC	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	210
PkrI	GCNGC	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	105
PstNI	CAGNNNCTG	1 cut(s)	47
PvuII	CAGCTG	1 cut(s)	44
RseI	CAYNNNNRTG	1 cut(s)	193
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	1 cut(s)	231
SduI	GDGCHC	1 cut(s)	290
SetI	ASST	8 cut(s)	46, 100, 105, 136, 172, 244, 256, 356
SfaNI	GCATC	1 cut(s)	247
SmiMI	CAYNNNNRTG	1 cut(s)	193
Sse9I	AATT	2 cut(s)	90, 109
SsiI	CCGC	1 cut(s)	12
TasI	AATT	2 cut(s)	90, 109
TfiI	GAWTC	1 cut(s)	210
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	1 cut(s)	318
TseI	GCWGC	1 cut(s)	44
TspDTI	ATGAA	1 cut(s)	362
TspGWI	ACGGA	1 cut(s)	387
TspRI	CASTG	1 cut(s)	318
XmnI	GAANNNNTTC	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.