Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010052

Physical Location & Seq

Genomic Coordinates Reverse (-)

31037374 .. 31039933

Gene Structure 2560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G325900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGACGATCTGCCCTCTGGTTACCGACCCAACGTTGGCGTTTGCCTCATTAACTCTGATAATCTGGTTTTCGTTGGATCAAGATTGAATGTTCCGGGAGCATGGCAGATGCCTCAGGGGGGTATTGAAGATGGTGAAGAACCTAAAAATGCAGCTATTAGGGAACTACGAGAAGAGACTGGTATAGAATCTGCTGAAATTATTGCTGAGGTTCCGAATTGGTTGACATATGACTTTCCGCCTGCTGTGAAGACCAAAGTAAATCGTCTCTGGGGAGGTGAATGGCACGGGCAAGCACAAAAATGGTTTCTTATGAGATTCACAAAAGATGAGAGTGAGATCAACTTAGCCAATGGGGCAGCTGATCCAGAATTTGCAGAGTGGAAATGGGCGATCCCTGAAGAAGTTATTGAGCAGGCAGTGGACTACAAGAGGCCAACATATGAGGAAGTTATCAGGACCTTCCAGTCCTACTTCGACGGCAGTGCTTTATCGACAAAGTGTAAATCCACAAAATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004081 GO:0004551 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008796 GO:0008893 GO:0009056 GO:0009058 GO:0009117 GO:0009166 GO:0009987 GO:0015959 GO:0015961 GO:0015965 GO:0015967 GO:0016462 GO:0016787 GO:0016788 GO:0016794 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042578 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0046434 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

174

Amino Acids

19.66

Weight (kDa)

4.66

Isoelectric Point (pI)

50.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30110 AT1G30110
fragaria_vesca	FvH4_4g23240 FvH4_4g32510 FvH4_4g32510 FvH4_4g32510
malus_domestica	MD13G1024600.v1.1 MD16G1027300.v1.1
prunus_persica	Prupe.1G325900_v2.0.a1
pyrus_communis	pycom13g02290 pycom16g02310
rosa_chinensis	RchiOBHm_Chr4g0441391
rosa_laevigata	RLG00000006095
rosa_multiflora	Rmu_sc0005516.1_g000004
rosa_roxburghii	Rroxscaffold_5G00382270
rosa_rugosa	Rorug04G0333000
rosa_samantha	Rh4AG385000 Rh4BG399000 Rh4CG414100 Rh4DG391700
rosa_wichuraiana	Rw4G033240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	466
AccB7I	CCANNNNNTGG	1 cut(s)	516
AciI	CCGC	1 cut(s)	239
AclI	AACGTT	1 cut(s)	33
AclWI	GGATC	3 cut(s)	85, 359, 388
AcsI	RAATTY	1 cut(s)	371
AcuI	CTGAAG	1 cut(s)	420
AfiI	CCNNNNNNNGG	3 cut(s)	35, 119, 516
AgsI	TTSAA	2 cut(s)	88, 128
AluBI	AGCT	2 cut(s)	155, 362
AluI	AGCT	2 cut(s)	155, 362
Alw26I	GTCTC	2 cut(s)	170, 272
AlwI	GGATC	3 cut(s)	85, 359, 388
AoxI	GGCC	1 cut(s)	434
ApeKI	GCWGC	2 cut(s)	152, 359
ApoI	RAATTY	1 cut(s)	371
AspS9I	GGNCC	1 cut(s)	459
AsuC2I	CCSGG	1 cut(s)	96
AsuHPI	GGTGA	2 cut(s)	146, 290
AvaII	GGWCC	1 cut(s)	459
AxyI	CCTNAGG	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	257
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	2 cut(s)	164, 371
BccI	CCATC	1 cut(s)	125
BceAI	ACGGC	1 cut(s)	496
BcgI	CGANNNNNNTGC	2 cut(s)	467, 501
BcnI	CCSGG	1 cut(s)	96
BcoDI	GTCTC	2 cut(s)	170, 272
BglI	GCCNNNNNGGC	1 cut(s)	356
BisI	GCNGC	2 cut(s)	153, 360
BlsI	GCNGC	2 cut(s)	154, 361
Bme1390I	CCNGG	1 cut(s)	96
Bme18I	GGWCC	1 cut(s)	459
BmgT120I	GGNCC	1 cut(s)	459
BmiI	GGNNCC	1 cut(s)	213
BmrFI	CCNGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	99
BpiI	GAAGAC	1 cut(s)	257
Bpu10I	CCTNAGC	1 cut(s)	207
BpuMI	CCSGG	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 119, 516
Bse1I	ACTGG	2 cut(s)	184, 466
Bse21I	CCTNAGG	1 cut(s)	114
BseLI	CCNNNNNNNGG	3 cut(s)	35, 119, 516
BseMII	CTCAG	2 cut(s)	128, 198
BseNI	ACTGG	2 cut(s)	184, 466
BseXI	GCAGC	2 cut(s)	164, 371
BshFI	GGCC	1 cut(s)	436
BsiSI	CCGG	1 cut(s)	95
BslI	CCNNNNNNNGG	3 cut(s)	35, 119, 516
BsmAI	GTCTC	2 cut(s)	170, 272
BsmBI	CGTCTC	1 cut(s)	272
BsnI	GGCC	1 cut(s)	436
Bsp143I	GATC	5 cut(s)	7, 77, 339, 364, 393
BspACI	CCGC	1 cut(s)	239
BspANI	GGCC	1 cut(s)	436
BspCNI	CTCAG	2 cut(s)	127, 199
BspLI	GGNNCC	1 cut(s)	213
BspPI	GGATC	3 cut(s)	85, 359, 388
BsrI	ACTGG	2 cut(s)	184, 466
BssMI	GATC	5 cut(s)	7, 77, 339, 364, 393
Bst6I	CTCTTC	1 cut(s)	168
BstC8I	GCNNGC	3 cut(s)	243, 294, 417
BstDEI	CTNAG	3 cut(s)	114, 207, 346
BstEII	GGTNACC	1 cut(s)	20
BstKTI	GATC	5 cut(s)	10, 80, 342, 367, 396
BstMAI	GTCTC	2 cut(s)	170, 272
BstMBI	GATC	5 cut(s)	7, 77, 339, 364, 393
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstPI	GGTNACC	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	94
BstV1I	GCAGC	2 cut(s)	164, 371
BstV2I	GAAGAC	1 cut(s)	257
Bsu36I	CCTNAGG	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	436
BtsI	GCAGTG	2 cut(s)	426, 490
BtsIMutI	CAGTG	2 cut(s)	426, 490
Cac8I	GCNNGC	3 cut(s)	243, 294, 417
Cfr13I	GGNCC	1 cut(s)	459
CviAII	CATG	1 cut(s)	102
CviJI	RGCY	4 cut(s)	155, 350, 362, 436
CviKI_1	RGCY	4 cut(s)	155, 350, 362, 436
DdeI	CTNAG	3 cut(s)	114, 207, 346
DpnI	GATC	5 cut(s)	9, 79, 341, 366, 395
DpnII	GATC	5 cut(s)	7, 77, 339, 364, 393
DrdI	GACNNNNNNGTC	1 cut(s)	466
DseDI	GACNNNNNNGTC	1 cut(s)	466
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
EciI	GGCGGA	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	459
Eco57I	CTGAAG	1 cut(s)	420
Eco81I	CCTNAGG	1 cut(s)	114
Eco91I	GGTNACC	1 cut(s)	20
EcoO109I	RGGNCCY	1 cut(s)	459
EcoO65I	GGTNACC	1 cut(s)	20
Esp3I	CGTCTC	1 cut(s)	272
FaeI	CATG	1 cut(s)	105
FaiI	YATR	7 cut(s)	103, 185, 229, 231, 314, 442, 444
FatI	CATG	1 cut(s)	101
FauNDI	CATATG	2 cut(s)	229, 442
Fnu4HI	GCNGC	2 cut(s)	153, 360
Fsp4HI	GCNGC	2 cut(s)	153, 360
GluI	GCNGC	2 cut(s)	153, 360
HaeIII	GGCC	1 cut(s)	436
HapII	CCGG	1 cut(s)	95
Hin1II	CATG	1 cut(s)	105
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HinfI	GANTC	2 cut(s)	188, 318
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	2 cut(s)	146, 290
Hpy166II	GTNNAC	2 cut(s)	225, 424
Hpy188I	TCNGA	2 cut(s)	58, 216
Hpy188III	TCNNGA	3 cut(s)	81, 368, 457
Hpy8I	GTNNAC	2 cut(s)	225, 424
Hpy99I	CGWCG	1 cut(s)	482
HpyAV	CCTTC	1 cut(s)	472
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	2 cut(s)	152, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpyF3I	CTNAG	3 cut(s)	114, 207, 346
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	105
Kzo9I	GATC	5 cut(s)	7, 77, 339, 364, 393
LmnI	GCTCC	1 cut(s)	98
Lsp1109I	GCAGC	2 cut(s)	164, 371
LweI	GCATC	1 cut(s)	99
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	5 cut(s)	9, 79, 341, 366, 395
MboI	GATC	5 cut(s)	7, 77, 339, 364, 393
MboII	GAAGA	5 cut(s)	140, 149, 185, 262, 413
MluCI	AATT	3 cut(s)	198, 217, 371
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	7 cut(s)	25, 56, 123, 202, 269, 426, 439
MseI	TTAA	1 cut(s)	51
MslI	CAYNNNNRTG	1 cut(s)	301
MspA1I	CMGCKG	1 cut(s)	362
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	356
NciI	CCSGG	1 cut(s)	96
NdeI	CATATG	2 cut(s)	229, 442
NdeII	GATC	5 cut(s)	7, 77, 339, 364, 393
NlaIII	CATG	1 cut(s)	105
NlaIV	GGNNCC	1 cut(s)	213
PfeI	GAWTC	2 cut(s)	188, 318
PflMI	CCANNNNNTGG	1 cut(s)	516
PfoI	TCCNGGA	1 cut(s)	94
PkrI	GCNGC	2 cut(s)	154, 361
PpuMI	RGGWCCY	1 cut(s)	459
Psp1406I	AACGTT	1 cut(s)	33
Psp5II	RGGWCCY	1 cut(s)	459
PspEI	GGTNACC	1 cut(s)	20
PspN4I	GGNNCC	1 cut(s)	213
PspPI	GGNCC	1 cut(s)	459
PspPPI	RGGWCCY	1 cut(s)	459
PvuII	CAGCTG	1 cut(s)	362
RseI	CAYNNNNRTG	1 cut(s)	301
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	2 cut(s)	153, 360
Sau3AI	GATC	5 cut(s)	7, 77, 339, 364, 393
Sau96I	GGNCC	1 cut(s)	459
ScrFI	CCNGG	1 cut(s)	96
SetI	ASST	7 cut(s)	36, 145, 157, 213, 280, 364, 464
SfaNI	GCATC	1 cut(s)	99
SinI	GGWCC	1 cut(s)	459
SmiMI	CAYNNNNRTG	1 cut(s)	301
Sse9I	AATT	3 cut(s)	198, 217, 371
SsiI	CCGC	1 cut(s)	239
StyD4I	CCNGG	1 cut(s)	94
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	2 cut(s)	477, 494
TasI	AATT	3 cut(s)	198, 217, 371
TfiI	GAWTC	2 cut(s)	188, 318
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	2 cut(s)	426, 490
TseI	GCWGC	2 cut(s)	152, 359
TspRI	CASTG	2 cut(s)	426, 490
Van91I	CCANNNNNTGG	1 cut(s)	516
VpaK11BI	GGWCC	1 cut(s)	459
XapI	RAATTY	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.