Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008861

Physical Location & Seq

Genomic Coordinates Reverse (-)

26108728 .. 26110487

Gene Structure 1760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g23710.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGGAAGAAACATACAAGAAAAGGACATCATGAATGGAAAACTCAAGGATATACTTAAAGGAGAACTAGAAGAGTTTCCTTCAGGTTCTTCACCAAAATCACCAAACCAAGAAGGTAGACCAACCAGCATGGTCATCAAGAAGGCAAATACTATGTTTCCAGCTCATTTGATAGCAGAAGCCATATCCACCCTCCGCGGCCTCGACCTAAGATGGTCAGGTCCAATAACACCTAGTGAGATGCTCTATGTCCAGCAATATGTGTTTGCAAAGTACCCACAGTACTGCAATGGTCTAGTGGACTTAGAAGGAGATAATAGTCAAAAGGTAGAAACTGACAGTAATACTAGTGAAGAGTCGTCAGGAACTCCCAACAAGTCCCCAAGGAACAAAGAGCTCTCCCCTTTCTCTTTCAGCAGCAACCACACTGATCTTGACAGAACCCAAATGGAACCCTCAAAGCTCCTAGACATCCTCACCAAGAAATCTTCATTCCAAGGGACATTTGTGTCAATCCCAGAAGTCCAAGCCAGGAATAGGGCCTTGAAGCATTGTGGTTTGCCAGAGGAGGACTATCTAGTCCTCTTTATGGCAAATTACAAAGATGCTATGGTGATGATTGGGGAGAGTTACCCTTTTTTCAAGGGAAATTACTACATGACCATAGTCAATAAAGAGTTGGATTCCATAAGGGAGTATGCCACTAAGAAAGAATCAAGGGTCATTTCAGCTCCAGAAACTTGGTTGGATTTGAGGATAAAAGGGTCACAACTTAGCCAGTATTTTAGGAGAAAATGCAAGCATAGTCCAAAGGGACTATTCTCATATCCAGCCACAGTCAATGACACTAAATACTCTATGCATTGGATTTCTGAGGCTCATAGGAATTCATGGCATGTTCTTCTTGATGCAACTGGTCTGAATTTAGGGGAGGACCGGCTAGCGCTTGCTATGTATCGCCCGGATTTCGTTCTGTGCACCATCGACAACACACATTCCCAGCCATCTAGTATCACTTGCTTGTTGGTTAGGAGAAAGACATTTGATACTATGGCACCTCCAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

356

Amino Acids

40.26

Weight (kDa)

8.13

Isoelectric Point (pI)

53.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008861)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g23710 FvH4_4g23710
malus_domestica	MD13G1119700.v1.1 MD16G1119900.v1.1
prunus_persica	Prupe.1G225300_v2.0.a1 Prupe.1G225300_v2.0.a1 Prupe.1G225300_v2.0.a1 Prupe.1G225300_v2.0.a1 Prupe.1G225300_v2.0.a1
pyrus_communis	pycom16g10240
rosa_chinensis	RchiOBHm_Chr4g0430181
rosa_laevigata	RLG00000006998
rosa_multiflora	Rmu_co8216684.1_g000001 Rmu_sc0004036.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371980
rosa_rugosa	Rorug04G0241100 Rorug04G0241200 Rorug04G0241300
rosa_samantha	Rh4AG297900 Rh4BG304300 Rh4CG319800 Rh4DG301800
rosa_wichuraiana	Rw4G025830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	508, 578
AccB1I	GGYRCC	1 cut(s)	1054
AccI	GTMKAC	1 cut(s)	118
AccII	CGCG	1 cut(s)	198
AciI	CCGC	2 cut(s)	196, 198
AcsI	RAATTY	2 cut(s)	886, 922
AcuI	CTGAAG	1 cut(s)	66
AdeI	CACNNNGTG	1 cut(s)	236
AfaI	GTAC	2 cut(s)	275, 284
AfeI	AGCGCT	1 cut(s)	945
AfiI	CCNNNNNNNGG	2 cut(s)	537, 589
AgsI	TTSAA	2 cut(s)	547, 643
AhlI	ACTAGT	1 cut(s)	347
AjnI	CCWGG	1 cut(s)	530
AluBI	AGCT	4 cut(s)	164, 397, 463, 731
AluI	AGCT	4 cut(s)	164, 397, 463, 731
Alw21I	GWGCWC	2 cut(s)	399, 980
Alw44I	GTGCAC	1 cut(s)	976
Aor51HI	AGCGCT	1 cut(s)	945
AoxI	GGCC	2 cut(s)	199, 540
ApaLI	GTGCAC	1 cut(s)	976
ApeKI	GCWGC	1 cut(s)	417
ApoI	RAATTY	2 cut(s)	886, 922
Asp700I	GAANNNNTTC	1 cut(s)	75
AspLEI	GCGC	1 cut(s)	946
AspS9I	GGNCC	3 cut(s)	221, 540, 934
AsuC2I	CCSGG	1 cut(s)	962
AsuHPI	GGTGA	4 cut(s)	84, 93, 469, 625
AsuNHI	GCTAGC	1 cut(s)	940
AvaII	GGWCC	2 cut(s)	221, 934
BaeGI	GKGCMC	1 cut(s)	980
BanI	GGYRCC	1 cut(s)	1054
BanII	GRGCYC	1 cut(s)	399
Bbv12I	GWGCWC	2 cut(s)	399, 980
BbvI	GCAGC	1 cut(s)	429
BccI	CCATC	3 cut(s)	207, 989, 1012
BciT130I	CCWGG	1 cut(s)	532
BcnI	CCSGG	1 cut(s)	962
BcuI	ACTAGT	1 cut(s)	347
BfaI	CTAG	9 cut(s)	68, 234, 296, 348, 467, 578, 941, 1008, 1066
BfoI	RGCGCY	1 cut(s)	947
BisI	GCNGC	2 cut(s)	199, 418
BlsI	GCNGC	2 cut(s)	200, 419
BmcAI	AGTACT	1 cut(s)	284
Bme1390I	CCNGG	2 cut(s)	532, 962
Bme18I	GGWCC	2 cut(s)	221, 934
BmgT120I	GGNCC	3 cut(s)	221, 540, 934
BmiI	GGNNCC	2 cut(s)	453, 1056
BmrFI	CCNGG	2 cut(s)	532, 962
BmsI	GCATC	3 cut(s)	231, 595, 898
BmtI	GCTAGC	1 cut(s)	944
BoxI	GACNNNNGTC	1 cut(s)	665
BpmI	CTGGAG	2 cut(s)	717, 1044
BpuEI	CTTGAG	1 cut(s)	29
BpuMI	CCSGG	1 cut(s)	962
BsaJI	CCNNGG	3 cut(s)	196, 383, 496
Bsc4I	CCNNNNNNNGG	2 cut(s)	537, 589
Bse118I	RCCGGY	1 cut(s)	936
Bse1I	ACTGG	2 cut(s)	778, 919
Bse3DI	GCAATG	1 cut(s)	295
BseBI	CCWGG	1 cut(s)	532
BseDI	CCNNGG	3 cut(s)	196, 383, 496
BseGI	GGATG	1 cut(s)	471
BseLI	CCNNNNNNNGG	2 cut(s)	537, 589
BseMI	GCAATG	1 cut(s)	295
BseMII	CTCAG	1 cut(s)	864
BseNI	ACTGG	2 cut(s)	778, 919
BseRI	GAGGAG	1 cut(s)	581
BseSI	GKGCMC	1 cut(s)	980
BseXI	GCAGC	1 cut(s)	429
BseYI	CCCAGC	1 cut(s)	999
Bsh1236I	CGCG	1 cut(s)	198
BshFI	GGCC	2 cut(s)	201, 542
BshNI	GGYRCC	1 cut(s)	1054
BsiHKAI	GWGCWC	2 cut(s)	399, 980
BsiSI	CCGG	2 cut(s)	937, 962
BslFI	GGGAC	3 cut(s)	364, 514, 828
BslI	CCNNNNNNNGG	2 cut(s)	537, 589
BsmFI	GGGAC	3 cut(s)	364, 514, 828
BsnI	GGCC	2 cut(s)	201, 542
Bsp1286I	GDGCHC	2 cut(s)	399, 980
Bsp143I	GATC	1 cut(s)	430
BspACI	CCGC	2 cut(s)	196, 198
BspANI	GGCC	2 cut(s)	201, 542
BspCNI	CTCAG	1 cut(s)	865
BspFNI	CGCG	1 cut(s)	198
BspHI	TCATGA	1 cut(s)	30
BspLI	GGNNCC	2 cut(s)	453, 1056
BspOI	GCTAGC	1 cut(s)	944
BspT107I	GGYRCC	1 cut(s)	1054
BsrDI	GCAATG	1 cut(s)	295
BsrFI	RCCGGY	1 cut(s)	936
BsrI	ACTGG	2 cut(s)	778, 919
BssAI	RCCGGY	1 cut(s)	936
BssECI	CCNNGG	3 cut(s)	196, 383, 496
BssMI	GATC	1 cut(s)	430
BssT1I	CCWWGG	2 cut(s)	383, 496
Bst2UI	CCWGG	1 cut(s)	532
Bst4CI	ACNGT	3 cut(s)	282, 341, 838
Bst6I	CTCTTC	2 cut(s)	66, 348
BstC8I	GCNNGC	3 cut(s)	800, 942, 948
BstDEI	CTNAG	5 cut(s)	209, 304, 705, 773, 873
BstDSI	CCRYGG	1 cut(s)	196
BstF5I	GGATG	1 cut(s)	471
BstFNI	CGCG	1 cut(s)	198
BstH2I	RGCGCY	1 cut(s)	947
BstHHI	GCGC	1 cut(s)	946
BstKTI	GATC	1 cut(s)	433
BstMBI	GATC	1 cut(s)	430
BstMWI	GCNNNNNNNGC	1 cut(s)	1061
BstNI	CCWGG	1 cut(s)	532
BstNSI	RCATGY	1 cut(s)	899
BstPAI	GACNNNNGTC	1 cut(s)	665
BstSCI	CCNGG	2 cut(s)	530, 960
BstSLI	GKGCMC	1 cut(s)	980
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	429
BstXI	CCANNNNNNTGG	1 cut(s)	741
BsuRI	GGCC	2 cut(s)	201, 542
BtgI	CCRYGG	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	471
BtsIMutI	CAGTG	1 cut(s)	426
Cac8I	GCNNGC	3 cut(s)	800, 942, 948
CciI	TCATGA	1 cut(s)	30
CfoI	GCGC	1 cut(s)	946
Cfr10I	RCCGGY	1 cut(s)	936
Cfr13I	GGNCC	3 cut(s)	221, 540, 934
Cfr42I	CCGCGG	1 cut(s)	199
Csp6I	GTAC	2 cut(s)	274, 283
CviAII	CATG	5 cut(s)	31, 130, 658, 891, 896
CviQI	GTAC	2 cut(s)	274, 283
DdeI	CTNAG	5 cut(s)	209, 304, 705, 773, 873
DpnI	GATC	1 cut(s)	432
DpnII	GATC	1 cut(s)	430
DraIII	CACNNNGTG	1 cut(s)	236
DrdI	GACNNNNNNGTC	2 cut(s)	508, 578
DseDI	GACNNNNNNGTC	2 cut(s)	508, 578
Eam1104I	CTCTTC	2 cut(s)	66, 348
EarI	CTCTTC	2 cut(s)	66, 348
Ecl136II	GAGCTC	1 cut(s)	397
Eco130I	CCWWGG	2 cut(s)	383, 496
Eco24I	GRGCYC	1 cut(s)	399
Eco47I	GGWCC	2 cut(s)	221, 934
Eco47III	AGCGCT	1 cut(s)	945
Eco53kI	GAGCTC	1 cut(s)	397
Eco57I	CTGAAG	1 cut(s)	66
EcoICRI	GAGCTC	1 cut(s)	397
EcoO109I	RGGNCCY	1 cut(s)	540
EcoRI	GAATTC	1 cut(s)	886
EcoRII	CCWGG	1 cut(s)	530
EcoT14I	CCWWGG	2 cut(s)	383, 496
EcoT22I	ATGCAT	1 cut(s)	864
EcoT38I	GRGCYC	1 cut(s)	399
ErhI	CCWWGG	2 cut(s)	383, 496
FaeI	CATG	5 cut(s)	34, 133, 661, 894, 899
FaqI	GGGAC	3 cut(s)	364, 514, 828
FatI	CATG	5 cut(s)	30, 129, 657, 890, 895
FblI	GTMKAC	1 cut(s)	118
Fnu4HI	GCNGC	2 cut(s)	199, 418
FokI	GGATG	1 cut(s)	458
FriOI	GRGCYC	1 cut(s)	399
Fsp4HI	GCNGC	2 cut(s)	199, 418
FspBI	CTAG	9 cut(s)	68, 234, 296, 348, 467, 578, 941, 1008, 1066
GlaI	GCGC	1 cut(s)	945
GluI	GCNGC	2 cut(s)	199, 418
GsaI	CCCAGC	1 cut(s)	1003
GsuI	CTGGAG	2 cut(s)	717, 1044
HaeII	RGCGCY	1 cut(s)	947
HaeIII	GGCC	2 cut(s)	201, 542
HapII	CCGG	2 cut(s)	937, 962
HhaI	GCGC	1 cut(s)	946
Hin1II	CATG	5 cut(s)	34, 133, 661, 894, 899
Hin6I	GCGC	1 cut(s)	944
HinP1I	GCGC	1 cut(s)	944
HinfI	GANTC	3 cut(s)	356, 683, 713
HpaII	CCGG	2 cut(s)	937, 962
HphI	GGTGA	4 cut(s)	84, 93, 469, 625
Hpy166II	GTNNAC	3 cut(s)	119, 301, 978
Hpy188I	TCNGA	2 cut(s)	874, 921
Hpy188III	TCNNGA	6 cut(s)	31, 139, 363, 434, 734, 905
Hpy8I	GTNNAC	3 cut(s)	119, 301, 978
HpyAV	CCTTC	4 cut(s)	90, 107, 136, 302
HpyCH4III	ACNGT	3 cut(s)	282, 341, 838
HpyCH4V	TGCA	6 cut(s)	269, 288, 798, 862, 911, 978
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1061
HpyF3I	CTNAG	5 cut(s)	209, 304, 705, 773, 873
Hsp92II	CATG	5 cut(s)	34, 133, 661, 894, 899
HspAI	GCGC	1 cut(s)	944
KspI	CCGCGG	1 cut(s)	199
Kzo9I	GATC	1 cut(s)	430
LmnI	GCTCC	2 cut(s)	468, 736
Lsp1109I	GCAGC	1 cut(s)	429
LweI	GCATC	3 cut(s)	231, 595, 898
MaeI	CTAG	9 cut(s)	68, 234, 296, 348, 467, 578, 941, 1008, 1066
MaeIII	GTNAC	2 cut(s)	629, 765
MalI	GATC	1 cut(s)	432
MboI	GATC	1 cut(s)	430
MboII	GAAGA	6 cut(s)	18, 81, 83, 365, 480, 893
MhlI	GDGCHC	2 cut(s)	399, 980
MluCI	AATT	4 cut(s)	595, 649, 886, 922
MlyI	GAGTC	1 cut(s)	365
MmeI	TCCRAC	2 cut(s)	660, 726
Mph1103I	ATGCAT	1 cut(s)	864
MroXI	GAANNNNTTC	1 cut(s)	75
MseI	TTAA	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	198
MspI	CCGG	2 cut(s)	937, 962
MspR9I	CCNGG	2 cut(s)	532, 962
MvaI	CCWGG	1 cut(s)	532
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	1061
NciI	CCSGG	1 cut(s)	962
NdeII	GATC	1 cut(s)	430
NheI	GCTAGC	1 cut(s)	940
NlaIII	CATG	5 cut(s)	34, 133, 661, 894, 899
NlaIV	GGNNCC	2 cut(s)	453, 1056
NmuCI	GTSAC	1 cut(s)	765
NsiI	ATGCAT	1 cut(s)	864
NspI	RCATGY	1 cut(s)	899
PagI	TCATGA	1 cut(s)	30
PdmI	GAANNNNTTC	1 cut(s)	75
PfeI	GAWTC	2 cut(s)	683, 713
PkrI	GCNGC	2 cut(s)	200, 419
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
PshAI	GACNNNNGTC	1 cut(s)	665
Psp124BI	GAGCTC	1 cut(s)	399
Psp6I	CCWGG	1 cut(s)	530
PspFI	CCCAGC	1 cut(s)	999
PspGI	CCWGG	1 cut(s)	530
PspN4I	GGNNCC	2 cut(s)	453, 1056
PspPI	GGNCC	3 cut(s)	221, 540, 934
RsaI	GTAC	2 cut(s)	275, 284
RsaNI	GTAC	2 cut(s)	274, 283
SacI	GAGCTC	1 cut(s)	399
SacII	CCGCGG	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	2 cut(s)	199, 418
Sau3AI	GATC	1 cut(s)	430
Sau96I	GGNCC	3 cut(s)	221, 540, 934
ScaI	AGTACT	1 cut(s)	284
SchI	GAGTC	1 cut(s)	365
ScrFI	CCNGG	2 cut(s)	532, 962
SduI	GDGCHC	2 cut(s)	399, 980
SfaNI	GCATC	3 cut(s)	231, 595, 898
Sfr303I	CCGCGG	1 cut(s)	199
SgrBI	CCGCGG	1 cut(s)	199
SinI	GGWCC	2 cut(s)	221, 934
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
SpeI	ACTAGT	1 cut(s)	347
Sse9I	AATT	4 cut(s)	595, 649, 886, 922
SsiI	CCGC	2 cut(s)	196, 198
SspMI	CTAG	9 cut(s)	68, 234, 296, 348, 467, 578, 941, 1008, 1066
SstI	GAGCTC	1 cut(s)	399
StyD4I	CCNGG	2 cut(s)	530, 960
StyI	CCWWGG	2 cut(s)	383, 496
TaaI	ACNGT	3 cut(s)	282, 341, 838
TaqI	TCGA	2 cut(s)	204, 984
TasI	AATT	4 cut(s)	595, 649, 886, 922
TatI	WGTACW	1 cut(s)	282
TauI	GCSGC	1 cut(s)	201
TfiI	GAWTC	2 cut(s)	683, 713
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	1 cut(s)	433
TseFI	GTSAC	1 cut(s)	765
TseI	GCWGC	1 cut(s)	417
Tsp45I	GTSAC	1 cut(s)	765
TspDTI	ATGAA	3 cut(s)	47, 480, 879
TspRI	CASTG	1 cut(s)	433
VneI	GTGCAC	1 cut(s)	976
VpaK11BI	GGWCC	2 cut(s)	221, 934
XapI	RAATTY	2 cut(s)	886, 922
XceI	RCATGY	1 cut(s)	899
XmiI	GTMKAC	1 cut(s)	118
XmnI	GAANNNNTTC	1 cut(s)	75
XspI	CTAG	9 cut(s)	68, 234, 296, 348, 467, 578, 941, 1008, 1066
ZrmI	AGTACT	1 cut(s)	284
Zsp2I	ATGCAT	1 cut(s)	864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.