Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008861

Physical Location & Seq

Genomic Coordinates Forward (+)

12567083 .. 12568359

Gene Structure 1277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006998

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGGGAGAAACATAGAAGAAAAGGACATCATGAATGGAAAACTCAAGGATATACTAAAAGGTGAACTAGAAGAGCTGCCTTCAGGTTCTTCACCAAAATCACCAAATCAAGATGGTAGACCAACCAGCATGGTCATTAAGAAGGCAAATACCATGTTTCCAGCTCATTTGATAGCAGAAGCCATATCCACCCTCCGCGGCCTTGACCTAAGATGGTCAGGTCCAATAACACCTAGTGAGATGCTCTATGTCCAGCAATATGTGTTTGCAAAGTACCCCCAGTACTGCAATGGTCTAGTGGAATTAGAAGGAGATAGTCAAAAGCTAGAAACTGACAACAATACTAATGAAGAGTCTTCAGGAACTCCCAACAAGTCCCCAAGGAGCAAAGAGCTCTCACCTTTCTCTTTCAGCAGCAACCACACCGATCTAGACAGAACCCAAATGGAGCCCTCAAAGCTCCTAGACATCCTCACCAAGAAATCTTCATTTCAAGGGACATTTGTGTCAATCCCAGAAGTCCAAGCCAGGAATAGGGCCTTGAAGCATTGTGGTTTGCCAGAGGAGGACTATTTAGTCCTCTTCACGGCAAATTATAAAGATGCTATGGTAATGATTGGGGAGAGTTATCCTTTTTTCAAGGGAAATTACTACATGACCATAGTCAATGAAGAGCTGGATTCTATAAGGGAGTATGCCTCTAACAAAGAATCAAGGGTCATATCAGCTCCAGAAACTTGGCTGGATCTGAGGATAAAAGGGTCACAACTTAGCCAGTATTTTAGGAGAAAATGCAAGCATAGTCCAAAGGGACTATTCTCCTATCCAGCCACAGTCAATGAGACTAAATACTCCATGCATTGGATTTCTGAGGCTCATAGGAATTCATGGCATGTTCTTCTTGATGCAACTGGTCTAAATTTAGGGGAGGACAGGCTAGCACTTGCTATGTACCGCCCGGATTTTGTTCTGTGCACCCTCAACAAAACACATTCCCAGCCATCTAGTATTACGTGCCTGTTGGTTAGGAGAAAGACATTTGATACTATGGCACCTCCATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

355

Amino Acids

40.14

Weight (kDa)

7.09

Isoelectric Point (pI)

56.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008861)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g23710 FvH4_4g23710
malus_domestica	MD13G1119700.v1.1 MD16G1119900.v1.1
prunus_persica	Prupe.1G225300_v2.0.a1 Prupe.1G225300_v2.0.a1 Prupe.1G225300_v2.0.a1 Prupe.1G225300_v2.0.a1 Prupe.1G225300_v2.0.a1
pyrus_communis	pycom16g10240
rosa_chinensis	RchiOBHm_Chr4g0430181
rosa_laevigata	RLG00000006998
rosa_multiflora	Rmu_co8216684.1_g000001 Rmu_sc0004036.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371980
rosa_rugosa	Rorug04G0241100 Rorug04G0241200 Rorug04G0241300
rosa_samantha	Rh4AG297900 Rh4BG304300 Rh4CG319800 Rh4DG301800
rosa_wichuraiana	Rw4G025830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	597
AasI	GACNNNNNNGTC	2 cut(s)	505, 575
AccB1I	GGYRCC	1 cut(s)	1051
AccB7I	CCANNNNNTGG	1 cut(s)	861
AccI	GTMKAC	1 cut(s)	118
AccII	CGCG	1 cut(s)	198
AciI	CCGC	3 cut(s)	196, 198, 955
AclWI	GGATC	1 cut(s)	753
AcsI	RAATTY	2 cut(s)	883, 919
AcuI	CTGAAG	2 cut(s)	66, 342
AdeI	CACNNNGTG	1 cut(s)	236
AfaI	GTAC	3 cut(s)	275, 284, 953
AfiI	CCNNNNNNNGG	3 cut(s)	534, 586, 861
AgsI	TTSAA	3 cut(s)	494, 544, 640
AjnI	CCWGG	1 cut(s)	527
AluBI	AGCT	7 cut(s)	76, 164, 325, 394, 460, 676, 728
AluI	AGCT	7 cut(s)	76, 164, 325, 394, 460, 676, 728
Alw21I	GWGCWC	2 cut(s)	396, 977
Alw26I	GTCTC	1 cut(s)	836
Alw44I	GTGCAC	1 cut(s)	973
AlwI	GGATC	1 cut(s)	753
AoxI	GGCC	2 cut(s)	199, 537
ApaLI	GTGCAC	1 cut(s)	973
ApeKI	GCWGC	2 cut(s)	76, 414
ApoI	RAATTY	2 cut(s)	883, 919
AspS9I	GGNCC	2 cut(s)	221, 537
AsuC2I	CCSGG	1 cut(s)	959
AsuHPI	GGTGA	5 cut(s)	74, 84, 93, 390, 466
AsuNHI	GCTAGC	1 cut(s)	937
AvaII	GGWCC	1 cut(s)	221
BaeGI	GKGCMC	1 cut(s)	977
BanI	GGYRCC	1 cut(s)	1051
BanII	GRGCYC	2 cut(s)	396, 453
BbsI	GAAGAC	1 cut(s)	348
Bbv12I	GWGCWC	2 cut(s)	396, 977
BbvI	GCAGC	2 cut(s)	63, 426
BccI	CCATC	3 cut(s)	107, 207, 1009
BceAI	ACGGC	1 cut(s)	603
BciT130I	CCWGG	1 cut(s)	529
BcnI	CCSGG	1 cut(s)	959
BcoDI	GTCTC	1 cut(s)	836
BfaI	CTAG	9 cut(s)	68, 234, 296, 326, 431, 464, 938, 1005, 1063
BisI	GCNGC	3 cut(s)	77, 199, 415
BlsI	GCNGC	3 cut(s)	78, 200, 416
BmcAI	AGTACT	1 cut(s)	284
Bme1390I	CCNGG	2 cut(s)	529, 959
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	2 cut(s)	221, 537
BmiI	GGNNCC	2 cut(s)	450, 1053
BmrFI	CCNGG	2 cut(s)	529, 959
BmrI	ACTGGG	1 cut(s)	274
BmsI	GCATC	3 cut(s)	231, 592, 895
BmtI	GCTAGC	1 cut(s)	941
BmuI	ACTGGG	1 cut(s)	274
BoxI	GACNNNNGTC	1 cut(s)	662
BpiI	GAAGAC	1 cut(s)	348
BplI	GAGNNNNNCTC	2 cut(s)	683, 715
BpmI	CTGGAG	1 cut(s)	714
BpuEI	CTTGAG	1 cut(s)	29
BpuMI	CCSGG	1 cut(s)	959
BsaAI	YACGTR	1 cut(s)	1014
BsaJI	CCNNGG	2 cut(s)	196, 380
Bsc4I	CCNNNNNNNGG	3 cut(s)	534, 586, 861
Bse1I	ACTGG	3 cut(s)	280, 775, 916
Bse3DI	GCAATG	1 cut(s)	295
BseBI	CCWGG	1 cut(s)	529
BseDI	CCNNGG	2 cut(s)	196, 380
BseGI	GGATG	2 cut(s)	468, 1058
BseLI	CCNNNNNNNGG	3 cut(s)	534, 586, 861
BseMI	GCAATG	1 cut(s)	295
BseMII	CTCAG	2 cut(s)	740, 861
BseNI	ACTGG	3 cut(s)	280, 775, 916
BseRI	GAGGAG	1 cut(s)	578
BseSI	GKGCMC	1 cut(s)	977
BseXI	GCAGC	2 cut(s)	63, 426
BseYI	CCCAGC	1 cut(s)	996
Bsh1236I	CGCG	1 cut(s)	198
BshFI	GGCC	2 cut(s)	201, 539
BshNI	GGYRCC	1 cut(s)	1051
BsiHKAI	GWGCWC	2 cut(s)	396, 977
BsiSI	CCGG	1 cut(s)	959
BslFI	GGGAC	3 cut(s)	361, 511, 825
BslI	CCNNNNNNNGG	3 cut(s)	534, 586, 861
BsmAI	GTCTC	1 cut(s)	836
BsmFI	GGGAC	3 cut(s)	361, 511, 825
BsnI	GGCC	2 cut(s)	201, 539
Bsp1286I	GDGCHC	3 cut(s)	396, 453, 977
Bsp143I	GATC	2 cut(s)	427, 745
BspACI	CCGC	3 cut(s)	196, 198, 955
BspANI	GGCC	2 cut(s)	201, 539
BspCNI	CTCAG	2 cut(s)	741, 862
BspFNI	CGCG	1 cut(s)	198
BspHI	TCATGA	1 cut(s)	30
BspLI	GGNNCC	2 cut(s)	450, 1053
BspOI	GCTAGC	1 cut(s)	941
BspPI	GGATC	1 cut(s)	753
BspQI	GCTCTTC	2 cut(s)	66, 666
BspT107I	GGYRCC	1 cut(s)	1051
BsrDI	GCAATG	1 cut(s)	295
BsrI	ACTGG	3 cut(s)	280, 775, 916
BssECI	CCNNGG	2 cut(s)	196, 380
BssMI	GATC	2 cut(s)	427, 745
BssT1I	CCWWGG	1 cut(s)	380
Bst2UI	CCWGG	1 cut(s)	529
Bst4CI	ACNGT	1 cut(s)	835
Bst6I	CTCTTC	4 cut(s)	66, 345, 587, 666
BstBAI	YACGTR	1 cut(s)	1014
BstC8I	GCNNGC	2 cut(s)	797, 939
BstDEI	CTNAG	4 cut(s)	209, 749, 770, 870
BstDSI	CCRYGG	1 cut(s)	196
BstF5I	GGATG	2 cut(s)	468, 1058
BstFNI	CGCG	1 cut(s)	198
BstKTI	GATC	2 cut(s)	430, 748
BstMAI	GTCTC	1 cut(s)	836
BstMBI	GATC	2 cut(s)	427, 745
BstMWI	GCNNNNNNNGC	1 cut(s)	457
BstNI	CCWGG	1 cut(s)	529
BstNSI	RCATGY	1 cut(s)	896
BstPAI	GACNNNNGTC	1 cut(s)	662
BstSCI	CCNGG	2 cut(s)	527, 957
BstSLI	GKGCMC	1 cut(s)	977
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	2 cut(s)	63, 426
BstV2I	GAAGAC	1 cut(s)	348
BstX2I	RGATCY	1 cut(s)	745
BstXI	CCANNNNNNTGG	1 cut(s)	738
BstYI	RGATCY	1 cut(s)	745
BsuRI	GGCC	2 cut(s)	201, 539
BtgI	CCRYGG	1 cut(s)	196
BtsCI	GGATG	2 cut(s)	468, 1058
Cac8I	GCNNGC	2 cut(s)	797, 939
CciI	TCATGA	1 cut(s)	30
Cfr13I	GGNCC	2 cut(s)	221, 537
Cfr42I	CCGCGG	1 cut(s)	199
Csp6I	GTAC	3 cut(s)	274, 283, 952
CviAII	CATG	7 cut(s)	31, 130, 154, 655, 856, 888, 893
CviQI	GTAC	3 cut(s)	274, 283, 952
DdeI	CTNAG	4 cut(s)	209, 749, 770, 870
DpnI	GATC	2 cut(s)	429, 747
DpnII	GATC	2 cut(s)	427, 745
DraIII	CACNNNGTG	1 cut(s)	236
DrdI	GACNNNNNNGTC	2 cut(s)	505, 575
DseDI	GACNNNNNNGTC	2 cut(s)	505, 575
Eam1104I	CTCTTC	4 cut(s)	66, 345, 587, 666
EarI	CTCTTC	4 cut(s)	66, 345, 587, 666
Ecl136II	GAGCTC	1 cut(s)	394
Eco130I	CCWWGG	1 cut(s)	380
Eco24I	GRGCYC	2 cut(s)	396, 453
Eco47I	GGWCC	1 cut(s)	221
Eco53kI	GAGCTC	1 cut(s)	394
Eco57I	CTGAAG	2 cut(s)	66, 342
EcoICRI	GAGCTC	1 cut(s)	394
EcoO109I	RGGNCCY	1 cut(s)	537
EcoRI	GAATTC	1 cut(s)	883
EcoRII	CCWGG	1 cut(s)	527
EcoT14I	CCWWGG	1 cut(s)	380
EcoT22I	ATGCAT	1 cut(s)	861
EcoT38I	GRGCYC	2 cut(s)	396, 453
ErhI	CCWWGG	1 cut(s)	380
FaeI	CATG	7 cut(s)	34, 133, 157, 658, 859, 891, 896
FaqI	GGGAC	3 cut(s)	361, 511, 825
FatI	CATG	7 cut(s)	30, 129, 153, 654, 855, 887, 892
FblI	GTMKAC	1 cut(s)	118
Fnu4HI	GCNGC	3 cut(s)	77, 199, 415
FokI	GGATG	2 cut(s)	455, 1045
FriOI	GRGCYC	2 cut(s)	396, 453
Fsp4HI	GCNGC	3 cut(s)	77, 199, 415
FspBI	CTAG	9 cut(s)	68, 234, 296, 326, 431, 464, 938, 1005, 1063
GluI	GCNGC	3 cut(s)	77, 199, 415
GsaI	CCCAGC	1 cut(s)	1000
GsuI	CTGGAG	1 cut(s)	714
HaeIII	GGCC	2 cut(s)	201, 539
HapII	CCGG	1 cut(s)	959
Hin1II	CATG	7 cut(s)	34, 133, 157, 658, 859, 891, 896
HinfI	GANTC	3 cut(s)	353, 680, 710
HpaII	CCGG	1 cut(s)	959
HphI	GGTGA	5 cut(s)	74, 84, 93, 390, 466
Hpy166II	GTNNAC	3 cut(s)	65, 119, 975
Hpy188I	TCNGA	2 cut(s)	750, 871
Hpy188III	TCNNGA	6 cut(s)	31, 110, 360, 431, 731, 902
Hpy8I	GTNNAC	3 cut(s)	65, 119, 975
HpyAV	CCTTC	3 cut(s)	90, 136, 302
HpyCH4III	ACNGT	1 cut(s)	835
HpyCH4IV	ACGT	1 cut(s)	1013
HpyCH4V	TGCA	6 cut(s)	269, 288, 795, 859, 908, 975
HpyF10VI	GCNNNNNNNGC	1 cut(s)	457
HpyF3I	CTNAG	4 cut(s)	209, 749, 770, 870
HpySE526I	ACGT	1 cut(s)	1013
Hsp92II	CATG	7 cut(s)	34, 133, 157, 658, 859, 891, 896
KspI	CCGCGG	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	427, 745
LguI	GCTCTTC	2 cut(s)	66, 666
LmnI	GCTCC	4 cut(s)	384, 448, 465, 733
Lsp1109I	GCAGC	2 cut(s)	63, 426
LweI	GCATC	3 cut(s)	231, 592, 895
MaeI	CTAG	9 cut(s)	68, 234, 296, 326, 431, 464, 938, 1005, 1063
MaeII	ACGT	1 cut(s)	1013
MaeIII	GTNAC	1 cut(s)	762
MalI	GATC	2 cut(s)	429, 747
MboI	GATC	2 cut(s)	427, 745
MboII	GAAGA	9 cut(s)	29, 81, 83, 348, 362, 477, 574, 683, 890
MflI	RGATCY	1 cut(s)	745
MhlI	GDGCHC	3 cut(s)	396, 453, 977
MluCI	AATT	5 cut(s)	302, 592, 646, 883, 919
MlyI	GAGTC	1 cut(s)	362
Mph1103I	ATGCAT	1 cut(s)	861
MseI	TTAA	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	198
MspI	CCGG	1 cut(s)	959
MspR9I	CCNGG	2 cut(s)	529, 959
MvaI	CCWGG	1 cut(s)	529
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	457
NciI	CCSGG	1 cut(s)	959
NdeII	GATC	2 cut(s)	427, 745
NheI	GCTAGC	1 cut(s)	937
NlaIII	CATG	7 cut(s)	34, 133, 157, 658, 859, 891, 896
NlaIV	GGNNCC	2 cut(s)	450, 1053
NmuCI	GTSAC	1 cut(s)	762
NsiI	ATGCAT	1 cut(s)	861
NspI	RCATGY	1 cut(s)	896
PagI	TCATGA	1 cut(s)	30
PciSI	GCTCTTC	2 cut(s)	66, 666
PfeI	GAWTC	2 cut(s)	680, 710
PflMI	CCANNNNNTGG	1 cut(s)	861
PkrI	GCNGC	3 cut(s)	78, 200, 416
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
Ppu21I	YACGTR	1 cut(s)	1014
PshAI	GACNNNNGTC	1 cut(s)	662
PsiI	TTATAA	1 cut(s)	597
Psp124BI	GAGCTC	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	527
PspFI	CCCAGC	1 cut(s)	996
PspGI	CCWGG	1 cut(s)	527
PspN4I	GGNNCC	2 cut(s)	450, 1053
PspPI	GGNCC	2 cut(s)	221, 537
PsuI	RGATCY	1 cut(s)	745
RsaI	GTAC	3 cut(s)	275, 284, 953
RsaNI	GTAC	3 cut(s)	274, 283, 952
SacI	GAGCTC	1 cut(s)	396
SacII	CCGCGG	1 cut(s)	199
SapI	GCTCTTC	2 cut(s)	66, 666
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	3 cut(s)	77, 199, 415
Sau3AI	GATC	2 cut(s)	427, 745
Sau96I	GGNCC	2 cut(s)	221, 537
ScaI	AGTACT	1 cut(s)	284
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	2 cut(s)	529, 959
SduI	GDGCHC	3 cut(s)	396, 453, 977
SfaNI	GCATC	3 cut(s)	231, 592, 895
Sfr303I	CCGCGG	1 cut(s)	199
SgrBI	CCGCGG	1 cut(s)	199
SinI	GGWCC	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	5 cut(s)	302, 592, 646, 883, 919
SsiI	CCGC	3 cut(s)	196, 198, 955
SspMI	CTAG	9 cut(s)	68, 234, 296, 326, 431, 464, 938, 1005, 1063
SstI	GAGCTC	1 cut(s)	396
StyD4I	CCNGG	2 cut(s)	527, 957
StyI	CCWWGG	1 cut(s)	380
TaaI	ACNGT	1 cut(s)	835
TaiI	ACGT	1 cut(s)	1016
TasI	AATT	5 cut(s)	302, 592, 646, 883, 919
TatI	WGTACW	1 cut(s)	282
TauI	GCSGC	1 cut(s)	201
TfiI	GAWTC	2 cut(s)	680, 710
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TseFI	GTSAC	1 cut(s)	762
TseI	GCWGC	2 cut(s)	76, 414
Tsp45I	GTSAC	1 cut(s)	762
TspDTI	ATGAA	5 cut(s)	47, 363, 477, 684, 876
Van91I	CCANNNNNTGG	1 cut(s)	861
VneI	GTGCAC	1 cut(s)	973
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	2 cut(s)	883, 919
XbaI	TCTAGA	1 cut(s)	430
XceI	RCATGY	1 cut(s)	896
XcmI	CCANNNNNNNNNTGG	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	118
XspI	CTAG	9 cut(s)	68, 234, 296, 326, 431, 464, 938, 1005, 1063
ZrmI	AGTACT	1 cut(s)	284
Zsp2I	ATGCAT	1 cut(s)	861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.