Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8216684.1

Orthogroup ID

OG0008861

Physical Location & Seq

Genomic Coordinates Forward (+)

27 .. 479

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8216684.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atgattggggagagttatccctttttcaagggaaattactacatgaccatagtcaatgaagagttggattctataagggagtatgcctctaacaaagaatcaagggtcatatcagctccagaaacttggctggatctgaggataaaagggtcacaacttagccagtattttaggagaaaatgcaagcatagtccaaagggactattctcttatccagccacagtcaatgagactaaatactcgatgcattggatttctgaggctcataggaattcatggcatgttcttcttgatgcaactggtctaaatttaggggaggaccggctagcgcttgctatgtaccgcccggattttgttctgtgcaccctcaacaatacacattcccagccatctagaattacctgcctgttggttaggagaaagacatttgatactatggcacctccatcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

17.4

Weight (kDa)

9.01

Isoelectric Point (pI)

59.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008861)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g23710 FvH4_4g23710
malus_domestica	MD13G1119700.v1.1 MD16G1119900.v1.1
prunus_persica	Prupe.1G225300_v2.0.a1 Prupe.1G225300_v2.0.a1 Prupe.1G225300_v2.0.a1 Prupe.1G225300_v2.0.a1 Prupe.1G225300_v2.0.a1
pyrus_communis	pycom16g10240
rosa_chinensis	RchiOBHm_Chr4g0430181
rosa_laevigata	RLG00000006998
rosa_multiflora	Rmu_co8216684.1_g000001 Rmu_sc0004036.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371980
rosa_rugosa	Rorug04G0241100 Rorug04G0241200 Rorug04G0241300
rosa_samantha	Rh4AG297900 Rh4BG304300 Rh4CG319800 Rh4DG301800
rosa_wichuraiana	Rw4G025830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	410
AccB1I	GGYRCC	1 cut(s)	439
AciI	CCGC	1 cut(s)	343
AclWI	GGATC	1 cut(s)	141
AcsI	RAATTY	2 cut(s)	271, 307
AfaI	GTAC	1 cut(s)	341
AfeI	AGCGCT	1 cut(s)	330
AgsI	TTSAA	1 cut(s)	28
AluBI	AGCT	1 cut(s)	116
AluI	AGCT	1 cut(s)	116
Alw21I	GWGCWC	1 cut(s)	365
Alw26I	GTCTC	1 cut(s)	224
Alw44I	GTGCAC	1 cut(s)	361
AlwI	GGATC	1 cut(s)	141
Aor51HI	AGCGCT	1 cut(s)	330
ApaLI	GTGCAC	1 cut(s)	361
ApoI	RAATTY	2 cut(s)	271, 307
AspLEI	GCGC	1 cut(s)	331
AspS9I	GGNCC	1 cut(s)	319
AsuC2I	CCSGG	1 cut(s)	347
AsuNHI	GCTAGC	1 cut(s)	325
AvaII	GGWCC	1 cut(s)	319
BaeGI	GKGCMC	1 cut(s)	365
BanI	GGYRCC	1 cut(s)	439
Bbv12I	GWGCWC	1 cut(s)	365
BccI	CCATC	1 cut(s)	397
BcnI	CCSGG	1 cut(s)	347
BcoDI	GTCTC	1 cut(s)	224
BfaI	CTAG	3 cut(s)	326, 393, 451
BfoI	RGCGCY	1 cut(s)	332
BfuAI	ACCTGC	1 cut(s)	410
Bme1390I	CCNGG	1 cut(s)	347
Bme18I	GGWCC	1 cut(s)	319
BmgT120I	GGNCC	1 cut(s)	319
BmiI	GGNNCC	1 cut(s)	441
BmrFI	CCNGG	1 cut(s)	347
BmsI	GCATC	2 cut(s)	234, 283
BmtI	GCTAGC	1 cut(s)	329
BoxI	GACNNNNGTC	1 cut(s)	50
BplI	GAGNNNNNCTC	2 cut(s)	71, 103
BpmI	CTGGAG	1 cut(s)	102
BpuMI	CCSGG	1 cut(s)	347
Bse118I	RCCGGY	1 cut(s)	321
Bse1I	ACTGG	2 cut(s)	163, 304
BseGI	GGATG	1 cut(s)	446
BseMII	CTCAG	2 cut(s)	128, 249
BseNI	ACTGG	2 cut(s)	163, 304
BseSI	GKGCMC	1 cut(s)	365
BseYI	CCCAGC	1 cut(s)	384
BshNI	GGYRCC	1 cut(s)	439
BsiHKAI	GWGCWC	1 cut(s)	365
BsiSI	CCGG	2 cut(s)	322, 347
BslFI	GGGAC	1 cut(s)	213
BsmAI	GTCTC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	365
Bsp143I	GATC	1 cut(s)	133
BspACI	CCGC	1 cut(s)	343
BspCNI	CTCAG	2 cut(s)	129, 250
BspLI	GGNNCC	1 cut(s)	441
BspMI	ACCTGC	1 cut(s)	410
BspOI	GCTAGC	1 cut(s)	329
BspPI	GGATC	1 cut(s)	141
BspT107I	GGYRCC	1 cut(s)	439
BsrFI	RCCGGY	1 cut(s)	321
BsrI	ACTGG	2 cut(s)	163, 304
BssAI	RCCGGY	1 cut(s)	321
BssMI	GATC	1 cut(s)	133
Bst4CI	ACNGT	1 cut(s)	223
Bst6I	CTCTTC	1 cut(s)	54
BstC8I	GCNNGC	3 cut(s)	185, 327, 333
BstDEI	CTNAG	3 cut(s)	137, 158, 258
BstF5I	GGATG	1 cut(s)	446
BstH2I	RGCGCY	1 cut(s)	332
BstHHI	GCGC	1 cut(s)	331
BstKTI	GATC	1 cut(s)	136
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	1 cut(s)	133
BstNSI	RCATGY	1 cut(s)	284
BstPAI	GACNNNNGTC	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	345
BstSLI	GKGCMC	1 cut(s)	365
BstX2I	RGATCY	1 cut(s)	133
BstXI	CCANNNNNNTGG	1 cut(s)	126
BstYI	RGATCY	1 cut(s)	133
BtsCI	GGATG	1 cut(s)	446
BveI	ACCTGC	1 cut(s)	410
Cac8I	GCNNGC	3 cut(s)	185, 327, 333
CfoI	GCGC	1 cut(s)	331
Cfr10I	RCCGGY	1 cut(s)	321
Cfr13I	GGNCC	1 cut(s)	319
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	3 cut(s)	43, 276, 281
CviJI	RGCY	7 cut(s)	116, 130, 162, 218, 263, 325, 388
CviKI_1	RGCY	7 cut(s)	116, 130, 162, 218, 263, 325, 388
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	3 cut(s)	137, 158, 258
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	319
Eco47III	AGCGCT	1 cut(s)	330
EcoRI	GAATTC	1 cut(s)	271
EcoT22I	ATGCAT	1 cut(s)	249
FaeI	CATG	3 cut(s)	46, 279, 284
FaqI	GGGAC	1 cut(s)	213
FatI	CATG	3 cut(s)	42, 275, 280
FokI	GGATG	1 cut(s)	433
FspBI	CTAG	3 cut(s)	326, 393, 451
GlaI	GCGC	1 cut(s)	330
GsaI	CCCAGC	1 cut(s)	388
GsuI	CTGGAG	1 cut(s)	102
HaeII	RGCGCY	1 cut(s)	332
HapII	CCGG	2 cut(s)	322, 347
HhaI	GCGC	1 cut(s)	331
Hin1II	CATG	3 cut(s)	46, 279, 284
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HinfI	GANTC	2 cut(s)	68, 98
HpaII	CCGG	2 cut(s)	322, 347
Hpy166II	GTNNAC	1 cut(s)	363
Hpy188I	TCNGA	2 cut(s)	138, 259
Hpy188III	TCNNGA	3 cut(s)	119, 290, 393
Hpy8I	GTNNAC	1 cut(s)	363
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4V	TGCA	4 cut(s)	183, 247, 296, 363
HpyF3I	CTNAG	3 cut(s)	137, 158, 258
Hsp92II	CATG	3 cut(s)	46, 279, 284
HspAI	GCGC	1 cut(s)	329
Kzo9I	GATC	1 cut(s)	133
LmnI	GCTCC	1 cut(s)	121
LweI	GCATC	2 cut(s)	234, 283
MaeI	CTAG	3 cut(s)	326, 393, 451
MaeIII	GTNAC	1 cut(s)	150
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	2 cut(s)	71, 278
MflI	RGATCY	1 cut(s)	133
MhlI	GDGCHC	1 cut(s)	365
MluCI	AATT	4 cut(s)	34, 271, 307, 396
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	6 cut(s)	97, 132, 253, 310, 377, 453
Mph1103I	ATGCAT	1 cut(s)	249
MspI	CCGG	2 cut(s)	322, 347
MspR9I	CCNGG	1 cut(s)	347
NciI	CCSGG	1 cut(s)	347
NdeII	GATC	1 cut(s)	133
NheI	GCTAGC	1 cut(s)	325
NlaIII	CATG	3 cut(s)	46, 279, 284
NlaIV	GGNNCC	1 cut(s)	441
NmuCI	GTSAC	1 cut(s)	150
NsiI	ATGCAT	1 cut(s)	249
NspI	RCATGY	1 cut(s)	284
PfeI	GAWTC	2 cut(s)	68, 98
PshAI	GACNNNNGTC	1 cut(s)	50
PspFI	CCCAGC	1 cut(s)	384
PspN4I	GGNNCC	1 cut(s)	441
PspPI	GGNCC	1 cut(s)	319
PsuI	RGATCY	1 cut(s)	133
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
Sau3AI	GATC	1 cut(s)	133
Sau96I	GGNCC	1 cut(s)	319
ScrFI	CCNGG	1 cut(s)	347
SduI	GDGCHC	1 cut(s)	365
SetI	ASST	3 cut(s)	118, 404, 445
SfaNI	GCATC	2 cut(s)	234, 283
SinI	GGWCC	1 cut(s)	319
Sse9I	AATT	4 cut(s)	34, 271, 307, 396
SsiI	CCGC	1 cut(s)	343
SspMI	CTAG	3 cut(s)	326, 393, 451
StyD4I	CCNGG	1 cut(s)	345
TaaI	ACNGT	1 cut(s)	223
TaqI	TCGA	1 cut(s)	242
TasI	AATT	4 cut(s)	34, 271, 307, 396
TfiI	GAWTC	2 cut(s)	68, 98
TseFI	GTSAC	1 cut(s)	150
Tsp45I	GTSAC	1 cut(s)	150
TspDTI	ATGAA	2 cut(s)	72, 264
VneI	GTGCAC	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	319
XapI	RAATTY	2 cut(s)	271, 307
XbaI	TCTAGA	1 cut(s)	392
XceI	RCATGY	1 cut(s)	284
XspI	CTAG	3 cut(s)	326, 393, 451
Zsp2I	ATGCAT	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.