Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0008861

Physical Location & Seq

Genomic Coordinates Reverse (-)

61096889 .. 61099085

Gene Structure 2197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG297900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGTTTCCAGCTCATTTGATAGCAGAAGCCATATCCACCCTCCGCGGCCTTGACCTAAGATGGTCAGGTCCAATAACACCTAGTGAGATGCTCTATGTCCAGCAATATGTGTTTGCAAAGTACCCCCAGTACTGCAATGGTCTAGTGGAATTAGAAGGAGATAGTCAAAAGCTAGAAACTGACAACAATACTAATGAAGAGTCTTCAGGAACTCCCAACAAGTCCCCAAGGAGCAAACAGCTCTCACCTTTCTCTTTCAGCAGCAACCACACCGATCTAGACAGAACCCAAATGGAGCCCTCAAAGCTCCTAGACATCCTCACCAAGAAATCTTCATTTCAAGGGACATTTGTGTCAATCCCAGAAGTCCAAGCCAGGAATAGGGCCTTGAAGCATTGTGGTTTGCCAGAGGAGGACTATTTAGTCCTCTTCATGGCAAATTATAAAGATGCTATGGTAATGATTGGGGAGAGTTATCCTTTTTTCAAGGGAAATTACTACATGACCATAGTCAATGAAGAGTTGGATTCTATAAGGGAGTATGCCTCTAACAAAGAATCAAGGGTCATATCAGCTCCAGAAACTTGGCTGGATCTGAGGATAAAAGGGTCACAACTTAGCCAGTATTTTAGGAGAAAATGCAAGCATAGTCCAAAGGGATTATTCTCCTATCCAGCCACAGTCAATGAGACTAAATACTCCATGCATTGGATTTCTGAGGCTCATAGGAATTCATGGCATGTTCTTCTTGATGCAACTGGACTAAATTTAGGGGAGGACCGGCTAGCGCTTGCTATGTACCGCCCGGATTTTGTTCTGTGCACCCTCAACAATACACATTCCCAGCCATCTAGTATTACCTGCCTGTTGGTTAGGAGAAAGACATTTGATACTATGGCACCTCCATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

303

Amino Acids

34.59

Weight (kDa)

6.71

Isoelectric Point (pI)

55.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008861)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g23710 FvH4_4g23710
malus_domestica	MD13G1119700.v1.1 MD16G1119900.v1.1
prunus_persica	Prupe.1G225300_v2.0.a1 Prupe.1G225300_v2.0.a1 Prupe.1G225300_v2.0.a1 Prupe.1G225300_v2.0.a1 Prupe.1G225300_v2.0.a1
pyrus_communis	pycom16g10240
rosa_chinensis	RchiOBHm_Chr4g0430181
rosa_laevigata	RLG00000006998
rosa_multiflora	Rmu_co8216684.1_g000001 Rmu_sc0004036.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371980
rosa_rugosa	Rorug04G0241100 Rorug04G0241200 Rorug04G0241300
rosa_samantha	Rh4AG297900 Rh4BG304300 Rh4CG319800 Rh4DG301800
rosa_wichuraiana	Rw4G025830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	444
AasI	GACNNNNNNGTC	2 cut(s)	352, 422
Acc36I	ACCTGC	1 cut(s)	869
AccB1I	GGYRCC	1 cut(s)	898
AccB7I	CCANNNNNTGG	1 cut(s)	708
AccII	CGCG	1 cut(s)	45
AciI	CCGC	3 cut(s)	43, 45, 802
AclWI	GGATC	1 cut(s)	600
AcsI	RAATTY	2 cut(s)	730, 766
AcuI	CTGAAG	1 cut(s)	189
AdeI	CACNNNGTG	1 cut(s)	83
AfaI	GTAC	3 cut(s)	122, 131, 800
AfeI	AGCGCT	1 cut(s)	789
AfiI	CCNNNNNNNGG	3 cut(s)	381, 433, 708
AgsI	TTSAA	3 cut(s)	341, 391, 487
AjnI	CCWGG	1 cut(s)	374
AluBI	AGCT	5 cut(s)	11, 172, 241, 307, 575
AluI	AGCT	5 cut(s)	11, 172, 241, 307, 575
Alw21I	GWGCWC	1 cut(s)	824
Alw26I	GTCTC	1 cut(s)	683
Alw44I	GTGCAC	1 cut(s)	820
AlwI	GGATC	1 cut(s)	600
Aor51HI	AGCGCT	1 cut(s)	789
AoxI	GGCC	2 cut(s)	46, 384
ApaLI	GTGCAC	1 cut(s)	820
ApeKI	GCWGC	1 cut(s)	261
ApoI	RAATTY	2 cut(s)	730, 766
AspLEI	GCGC	1 cut(s)	790
AspS9I	GGNCC	3 cut(s)	68, 384, 778
AsuC2I	CCSGG	1 cut(s)	806
AsuHPI	GGTGA	2 cut(s)	237, 313
AsuNHI	GCTAGC	1 cut(s)	784
AvaII	GGWCC	2 cut(s)	68, 778
BaeGI	GKGCMC	1 cut(s)	824
BanI	GGYRCC	1 cut(s)	898
BanII	GRGCYC	1 cut(s)	300
BbsI	GAAGAC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	824
BbvI	GCAGC	1 cut(s)	273
BccI	CCATC	2 cut(s)	54, 856
BciT130I	CCWGG	1 cut(s)	376
BcnI	CCSGG	1 cut(s)	806
BcoDI	GTCTC	1 cut(s)	683
BfaI	CTAG	8 cut(s)	81, 143, 173, 278, 311, 785, 852, 910
BfoI	RGCGCY	1 cut(s)	791
BfuAI	ACCTGC	1 cut(s)	869
BisI	GCNGC	2 cut(s)	46, 262
BlsI	GCNGC	2 cut(s)	47, 263
BmcAI	AGTACT	1 cut(s)	131
Bme1390I	CCNGG	2 cut(s)	376, 806
Bme18I	GGWCC	2 cut(s)	68, 778
BmgT120I	GGNCC	3 cut(s)	68, 384, 778
BmiI	GGNNCC	2 cut(s)	297, 900
BmrFI	CCNGG	2 cut(s)	376, 806
BmrI	ACTGGG	1 cut(s)	121
BmsI	GCATC	3 cut(s)	78, 439, 742
BmtI	GCTAGC	1 cut(s)	788
BmuI	ACTGGG	1 cut(s)	121
BoxI	GACNNNNGTC	1 cut(s)	509
BpiI	GAAGAC	1 cut(s)	195
BplI	GAGNNNNNCTC	2 cut(s)	530, 562
BpmI	CTGGAG	1 cut(s)	561
BpuMI	CCSGG	1 cut(s)	806
BsaJI	CCNNGG	2 cut(s)	43, 227
Bsc4I	CCNNNNNNNGG	3 cut(s)	381, 433, 708
Bse118I	RCCGGY	1 cut(s)	780
Bse1I	ACTGG	3 cut(s)	127, 622, 763
Bse3DI	GCAATG	1 cut(s)	142
BseBI	CCWGG	1 cut(s)	376
BseDI	CCNNGG	2 cut(s)	43, 227
BseGI	GGATG	2 cut(s)	315, 905
BseLI	CCNNNNNNNGG	3 cut(s)	381, 433, 708
BseMI	GCAATG	1 cut(s)	142
BseMII	CTCAG	2 cut(s)	587, 708
BseNI	ACTGG	3 cut(s)	127, 622, 763
BseRI	GAGGAG	1 cut(s)	425
BseSI	GKGCMC	1 cut(s)	824
BseXI	GCAGC	1 cut(s)	273
BseYI	CCCAGC	1 cut(s)	843
Bsh1236I	CGCG	1 cut(s)	45
BshFI	GGCC	2 cut(s)	48, 386
BshNI	GGYRCC	1 cut(s)	898
BsiHKAI	GWGCWC	1 cut(s)	824
BsiSI	CCGG	2 cut(s)	781, 806
BslFI	GGGAC	2 cut(s)	208, 358
BslI	CCNNNNNNNGG	3 cut(s)	381, 433, 708
BsmAI	GTCTC	1 cut(s)	683
BsmFI	GGGAC	2 cut(s)	208, 358
BsnI	GGCC	2 cut(s)	48, 386
Bsp1286I	GDGCHC	2 cut(s)	300, 824
Bsp143I	GATC	2 cut(s)	274, 592
BspACI	CCGC	3 cut(s)	43, 45, 802
BspANI	GGCC	2 cut(s)	48, 386
BspCNI	CTCAG	2 cut(s)	588, 709
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	2 cut(s)	297, 900
BspMI	ACCTGC	1 cut(s)	869
BspOI	GCTAGC	1 cut(s)	788
BspPI	GGATC	1 cut(s)	600
BspT107I	GGYRCC	1 cut(s)	898
BsrDI	GCAATG	1 cut(s)	142
BsrFI	RCCGGY	1 cut(s)	780
BsrI	ACTGG	3 cut(s)	127, 622, 763
BssAI	RCCGGY	1 cut(s)	780
BssECI	CCNNGG	2 cut(s)	43, 227
BssMI	GATC	2 cut(s)	274, 592
BssT1I	CCWWGG	1 cut(s)	227
Bst2UI	CCWGG	1 cut(s)	376
Bst4CI	ACNGT	1 cut(s)	682
Bst6I	CTCTTC	3 cut(s)	192, 434, 513
BstC8I	GCNNGC	3 cut(s)	644, 786, 792
BstDEI	CTNAG	4 cut(s)	56, 596, 617, 717
BstDSI	CCRYGG	1 cut(s)	43
BstF5I	GGATG	2 cut(s)	315, 905
BstFNI	CGCG	1 cut(s)	45
BstH2I	RGCGCY	1 cut(s)	791
BstHHI	GCGC	1 cut(s)	790
BstKTI	GATC	2 cut(s)	277, 595
BstMAI	GTCTC	1 cut(s)	683
BstMBI	GATC	2 cut(s)	274, 592
BstMWI	GCNNNNNNNGC	1 cut(s)	304
BstNI	CCWGG	1 cut(s)	376
BstNSI	RCATGY	1 cut(s)	743
BstPAI	GACNNNNGTC	1 cut(s)	509
BstSCI	CCNGG	2 cut(s)	374, 804
BstSLI	GKGCMC	1 cut(s)	824
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	273
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	592
BstXI	CCANNNNNNTGG	1 cut(s)	585
BstYI	RGATCY	1 cut(s)	592
BsuRI	GGCC	2 cut(s)	48, 386
BtgI	CCRYGG	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	315, 905
BveI	ACCTGC	1 cut(s)	869
Cac8I	GCNNGC	3 cut(s)	644, 786, 792
CfoI	GCGC	1 cut(s)	790
Cfr10I	RCCGGY	1 cut(s)	780
Cfr13I	GGNCC	3 cut(s)	68, 384, 778
Cfr42I	CCGCGG	1 cut(s)	46
Csp6I	GTAC	3 cut(s)	121, 130, 799
CviAII	CATG	5 cut(s)	433, 502, 703, 735, 740
CviQI	GTAC	3 cut(s)	121, 130, 799
DdeI	CTNAG	4 cut(s)	56, 596, 617, 717
DpnI	GATC	2 cut(s)	276, 594
DpnII	GATC	2 cut(s)	274, 592
DraIII	CACNNNGTG	1 cut(s)	83
DrdI	GACNNNNNNGTC	2 cut(s)	352, 422
DseDI	GACNNNNNNGTC	2 cut(s)	352, 422
Eam1104I	CTCTTC	3 cut(s)	192, 434, 513
EarI	CTCTTC	3 cut(s)	192, 434, 513
Eco130I	CCWWGG	1 cut(s)	227
Eco24I	GRGCYC	1 cut(s)	300
Eco47I	GGWCC	2 cut(s)	68, 778
Eco47III	AGCGCT	1 cut(s)	789
Eco57I	CTGAAG	1 cut(s)	189
EcoO109I	RGGNCCY	1 cut(s)	384
EcoRI	GAATTC	1 cut(s)	730
EcoRII	CCWGG	1 cut(s)	374
EcoT14I	CCWWGG	1 cut(s)	227
EcoT22I	ATGCAT	1 cut(s)	708
EcoT38I	GRGCYC	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	227
FaeI	CATG	5 cut(s)	436, 505, 706, 738, 743
FaqI	GGGAC	2 cut(s)	208, 358
FatI	CATG	5 cut(s)	432, 501, 702, 734, 739
Fnu4HI	GCNGC	2 cut(s)	46, 262
FokI	GGATG	2 cut(s)	302, 892
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	2 cut(s)	46, 262
FspBI	CTAG	8 cut(s)	81, 143, 173, 278, 311, 785, 852, 910
GlaI	GCGC	1 cut(s)	789
GluI	GCNGC	2 cut(s)	46, 262
GsaI	CCCAGC	1 cut(s)	847
GsuI	CTGGAG	1 cut(s)	561
HaeII	RGCGCY	1 cut(s)	791
HaeIII	GGCC	2 cut(s)	48, 386
HapII	CCGG	2 cut(s)	781, 806
HhaI	GCGC	1 cut(s)	790
Hin1II	CATG	5 cut(s)	436, 505, 706, 738, 743
Hin6I	GCGC	1 cut(s)	788
HinP1I	GCGC	1 cut(s)	788
HinfI	GANTC	3 cut(s)	200, 527, 557
HpaII	CCGG	2 cut(s)	781, 806
HphI	GGTGA	2 cut(s)	237, 313
Hpy166II	GTNNAC	1 cut(s)	822
Hpy188I	TCNGA	2 cut(s)	597, 718
Hpy188III	TCNNGA	4 cut(s)	207, 278, 578, 749
Hpy8I	GTNNAC	1 cut(s)	822
HpyAV	CCTTC	1 cut(s)	149
HpyCH4III	ACNGT	1 cut(s)	682
HpyCH4V	TGCA	6 cut(s)	116, 135, 642, 706, 755, 822
HpyF10VI	GCNNNNNNNGC	1 cut(s)	304
HpyF3I	CTNAG	4 cut(s)	56, 596, 617, 717
Hsp92II	CATG	5 cut(s)	436, 505, 706, 738, 743
HspAI	GCGC	1 cut(s)	788
KspI	CCGCGG	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	274, 592
LmnI	GCTCC	4 cut(s)	231, 295, 312, 580
Lsp1109I	GCAGC	1 cut(s)	273
LweI	GCATC	3 cut(s)	78, 439, 742
MaeI	CTAG	8 cut(s)	81, 143, 173, 278, 311, 785, 852, 910
MaeIII	GTNAC	1 cut(s)	609
MalI	GATC	2 cut(s)	276, 594
MboI	GATC	2 cut(s)	274, 592
MboII	GAAGA	6 cut(s)	195, 209, 324, 421, 530, 737
MflI	RGATCY	1 cut(s)	592
MhlI	GDGCHC	2 cut(s)	300, 824
MluCI	AATT	5 cut(s)	149, 439, 493, 730, 766
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	504
Mph1103I	ATGCAT	1 cut(s)	708
MspA1I	CMGCKG	1 cut(s)	45
MspI	CCGG	2 cut(s)	781, 806
MspR9I	CCNGG	2 cut(s)	376, 806
MvaI	CCWGG	1 cut(s)	376
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	1 cut(s)	304
NciI	CCSGG	1 cut(s)	806
NdeII	GATC	2 cut(s)	274, 592
NheI	GCTAGC	1 cut(s)	784
NlaIII	CATG	5 cut(s)	436, 505, 706, 738, 743
NlaIV	GGNNCC	2 cut(s)	297, 900
NmuCI	GTSAC	1 cut(s)	609
NsiI	ATGCAT	1 cut(s)	708
NspI	RCATGY	1 cut(s)	743
PfeI	GAWTC	2 cut(s)	527, 557
PflMI	CCANNNNNTGG	1 cut(s)	708
PkrI	GCNGC	2 cut(s)	47, 263
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PshAI	GACNNNNGTC	1 cut(s)	509
PsiI	TTATAA	1 cut(s)	444
Psp6I	CCWGG	1 cut(s)	374
PspFI	CCCAGC	1 cut(s)	843
PspGI	CCWGG	1 cut(s)	374
PspN4I	GGNNCC	2 cut(s)	297, 900
PspPI	GGNCC	3 cut(s)	68, 384, 778
PsuI	RGATCY	1 cut(s)	592
RsaI	GTAC	3 cut(s)	122, 131, 800
RsaNI	GTAC	3 cut(s)	121, 130, 799
SacII	CCGCGG	1 cut(s)	46
SatI	GCNGC	2 cut(s)	46, 262
Sau3AI	GATC	2 cut(s)	274, 592
Sau96I	GGNCC	3 cut(s)	68, 384, 778
ScaI	AGTACT	1 cut(s)	131
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	2 cut(s)	376, 806
SduI	GDGCHC	2 cut(s)	300, 824
SfaNI	GCATC	3 cut(s)	78, 439, 742
Sfr303I	CCGCGG	1 cut(s)	46
SgrBI	CCGCGG	1 cut(s)	46
SinI	GGWCC	2 cut(s)	68, 778
Sse9I	AATT	5 cut(s)	149, 439, 493, 730, 766
SsiI	CCGC	3 cut(s)	43, 45, 802
SspMI	CTAG	8 cut(s)	81, 143, 173, 278, 311, 785, 852, 910
StyD4I	CCNGG	2 cut(s)	374, 804
StyI	CCWWGG	1 cut(s)	227
TaaI	ACNGT	1 cut(s)	682
TasI	AATT	5 cut(s)	149, 439, 493, 730, 766
TatI	WGTACW	1 cut(s)	129
TauI	GCSGC	1 cut(s)	48
TfiI	GAWTC	2 cut(s)	527, 557
TseFI	GTSAC	1 cut(s)	609
TseI	GCWGC	1 cut(s)	261
Tsp45I	GTSAC	1 cut(s)	609
TspDTI	ATGAA	5 cut(s)	210, 324, 421, 531, 723
Van91I	CCANNNNNTGG	1 cut(s)	708
VneI	GTGCAC	1 cut(s)	820
VpaK11BI	GGWCC	2 cut(s)	68, 778
XapI	RAATTY	2 cut(s)	730, 766
XbaI	TCTAGA	1 cut(s)	277
XceI	RCATGY	1 cut(s)	743
XcmI	CCANNNNNNNNNTGG	1 cut(s)	134
XspI	CTAG	8 cut(s)	81, 143, 173, 278, 311, 785, 852, 910
ZrmI	AGTACT	1 cut(s)	131
Zsp2I	ATGCAT	1 cut(s)	708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.