Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008861

Physical Location & Seq

Genomic Coordinates Reverse (-)

23894592 .. 23897017

Gene Structure 2426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G225300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGGCAGAAACATACAAGAAAAGGACATCATGAATGGCAAACTTAAGGATATAGTAAATGGTGAAATCCAAGAACTGGCTTCTGGTTCTTTACCAAAATCACCAACTCAAGATGGAAGTCCAAAGAAAGATGGAAGGCCAAGCAGCATGGTGATCAAGAAGGCACATACTATGTTTCCTGCTCACTTGATAGCAGAAGCCATATCCTCACTCAGAGGCCTTGATCTAAGATGGTCAGGTCCAATAACACCAAGTGAGATGCTTTATGTTCAGCAATACATCTTTGCAAAGTACCCACAATACTGCAATGGTCTAGTGGAAGAGGTGGAAAAACTAGAAATTGATAATCTTTCCATCAATGAAGAATCTTCAGCAACAACACCCCAAGAGAAGCTCAAGTCACCCAAGAGTGTGACACCAAAAGAGCTTTCCCCATTTAGCACCACTCACTCTGATCTTGACAGGACCCAAATGGAGCCTTCAAGACTGCTTGATATCCTGACCAAGAAATCTTCATTCCAAGGCAATTTTGTCTCCATTCCTGAGGTCCAAGCTAGCAATAGAGCCTTGAAGCAATGTGGGTTGCAAGAGGAGGACTATTTAGTCCTGTTCATGGCCAATTACAAAGATGCTATGGTGATGATTGGTGAGAGTTACCCTTTCTTCAGAGGAAATTACTATATGACCATTGTCAGTGACGAGACTGATGCCATAAGGGAATTTGCCTCCAACAAAGAAACAAGGATCATATCAGCACCAGAAACTTGGTTGGATTTGAGGATCAAAGGATCACAACTTAGCCAGTACTTCAGAAGAAAGTGCAAGCACAGTCCAAAGGGACTGTTTTCCTATCCAGCCACTGTGAATGGGACTAAATACTCCATGCATTGGATCTCAGAAGCACACAGAAACTCATGGCATGTTTTGCTTGATGCAACTGGTTTGGTTTTGGGGGAGGATCGGTTGACGCTTGCTCTATACCGCCCTGATTTTGTTCTATGCACCCTTAACAATACACACACCCAGCCATCCAGCATCACTTGCCTCTTGGTTAGGAGAAAAACATTTGATACTATGGCACATACAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

364

Amino Acids

41.03

Weight (kDa)

7.65

Isoelectric Point (pI)

46.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008861)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g23710 FvH4_4g23710
malus_domestica	MD13G1119700.v1.1 MD16G1119900.v1.1
prunus_persica	Prupe.1G225300_v2.0.a1 Prupe.1G225300_v2.0.a1 Prupe.1G225300_v2.0.a1 Prupe.1G225300_v2.0.a1 Prupe.1G225300_v2.0.a1
pyrus_communis	pycom16g10240
rosa_chinensis	RchiOBHm_Chr4g0430181
rosa_laevigata	RLG00000006998
rosa_multiflora	Rmu_co8216684.1_g000001 Rmu_sc0004036.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371980
rosa_rugosa	Rorug04G0241100 Rorug04G0241200 Rorug04G0241300
rosa_samantha	Rh4AG297900 Rh4BG304300 Rh4CG319800 Rh4DG301800
rosa_wichuraiana	Rw4G025830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	602
AccB7I	CCANNNNNTGG	2 cut(s)	76, 888
AciI	CCGC	1 cut(s)	982
AclWI	GGATC	5 cut(s)	752, 788, 796, 899, 966
AcoI	YGGCCR	1 cut(s)	615
AcsI	RAATTY	1 cut(s)	719
AcuI	CTGAAG	3 cut(s)	354, 649, 793
AdeI	CACNNNGTG	1 cut(s)	254
AfaI	GTAC	2 cut(s)	293, 806
AfiI	CCNNNNNNNGG	3 cut(s)	76, 613, 888
AflII	CTTAAG	1 cut(s)	44
AgsI	TTSAA	2 cut(s)	483, 571
AjuI	GAANNNNNNNTTGG	2 cut(s)	412, 444
AluBI	AGCT	3 cut(s)	394, 427, 554
AluI	AGCT	3 cut(s)	394, 427, 554
Alw26I	GTCTC	2 cut(s)	538, 695
AlwI	GGATC	5 cut(s)	752, 788, 796, 899, 966
AlwNI	CAGNNNCTG	1 cut(s)	860
AoxI	GGCC	3 cut(s)	137, 217, 615
ApeKI	GCWGC	1 cut(s)	144
ApoI	RAATTY	1 cut(s)	719
AspS9I	GGNCC	3 cut(s)	239, 465, 547
AsuHPI	GGTGA	6 cut(s)	74, 93, 163, 393, 649, 659
AsuNHI	GCTAGC	1 cut(s)	554
AvaII	GGWCC	3 cut(s)	239, 465, 547
AxyI	CCTNAGG	1 cut(s)	543
BalI	TGGCCA	1 cut(s)	617
BbvI	GCAGC	1 cut(s)	156
BccI	CCATC	5 cut(s)	107, 125, 225, 362, 1036
BcgI	CGANNNNNNTGC	2 cut(s)	689, 723
BclI	TGATCA	1 cut(s)	153
BcoDI	GTCTC	2 cut(s)	538, 695
BfaI	CTAG	4 cut(s)	314, 335, 555, 1090
BfrI	CTTAAG	1 cut(s)	44
BisI	GCNGC	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	146
BmcAI	AGTACT	1 cut(s)	806
Bme18I	GGWCC	3 cut(s)	239, 465, 547
BmgT120I	GGNCC	3 cut(s)	239, 465, 547
BmiI	GGNNCC	2 cut(s)	467, 477
BmsI	GCATC	5 cut(s)	249, 619, 697, 922, 1044
BmtI	GCTAGC	1 cut(s)	558
BoxI	GACNNNNGTC	1 cut(s)	689
BpuEI	CTTGAG	2 cut(s)	93, 380
BsaJI	CCNNGG	1 cut(s)	520
BsaXI	ACNNNNNCTCC	2 cut(s)	947, 977
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 613, 888
Bse1I	ACTGG	3 cut(s)	81, 802, 943
Bse21I	CCTNAGG	1 cut(s)	543
Bse3DI	GCAATG	2 cut(s)	313, 581
BseDI	CCNNGG	1 cut(s)	520
BseGI	GGATG	1 cut(s)	1028
BseLI	CCNNNNNNNGG	3 cut(s)	76, 613, 888
BseMI	GCAATG	2 cut(s)	313, 581
BseMII	CTCAG	3 cut(s)	226, 534, 909
BseNI	ACTGG	3 cut(s)	81, 802, 943
BseRI	GAGGAG	1 cut(s)	605
BseXI	GCAGC	1 cut(s)	156
BseYI	CCCAGC	1 cut(s)	1023
BshFI	GGCC	3 cut(s)	139, 219, 617
BslFI	GGGAC	2 cut(s)	852, 883
BslI	CCNNNNNNNGG	3 cut(s)	76, 613, 888
BsmAI	GTCTC	2 cut(s)	538, 695
BsmFI	GGGAC	2 cut(s)	852, 883
BsnI	GGCC	3 cut(s)	139, 219, 617
Bsp143I	GATC	8 cut(s)	153, 223, 454, 744, 780, 788, 891, 958
BspACI	CCGC	1 cut(s)	982
BspANI	GGCC	3 cut(s)	139, 219, 617
BspCNI	CTCAG	3 cut(s)	225, 535, 908
BspHI	TCATGA	1 cut(s)	30
BspLI	GGNNCC	2 cut(s)	467, 477
BspOI	GCTAGC	1 cut(s)	558
BspPI	GGATC	5 cut(s)	752, 788, 796, 899, 966
BspTI	CTTAAG	1 cut(s)	44
BsrDI	GCAATG	2 cut(s)	313, 581
BsrI	ACTGG	3 cut(s)	81, 802, 943
BssECI	CCNNGG	1 cut(s)	520
BssMI	GATC	8 cut(s)	153, 223, 454, 744, 780, 788, 891, 958
BssT1I	CCWWGG	1 cut(s)	520
Bst4CI	ACNGT	3 cut(s)	830, 843, 862
Bst6I	CTCTTC	1 cut(s)	315
BstAFI	CTTAAG	1 cut(s)	44
BstAPI	GCANNNNNTGC	2 cut(s)	925, 1041
BstC8I	GCNNGC	3 cut(s)	556, 824, 972
BstDEI	CTNAG	5 cut(s)	212, 227, 543, 797, 895
BstF5I	GGATG	1 cut(s)	1028
BstKTI	GATC	8 cut(s)	156, 226, 457, 747, 783, 791, 894, 961
BstMAI	GTCTC	2 cut(s)	538, 695
BstMBI	GATC	8 cut(s)	153, 223, 454, 744, 780, 788, 891, 958
BstMWI	GCNNNNNNNGC	3 cut(s)	925, 1041, 1085
BstNSI	RCATGY	1 cut(s)	923
BstPAI	GACNNNNGTC	1 cut(s)	689
BstV1I	GCAGC	1 cut(s)	156
BstX2I	RGATCY	1 cut(s)	891
BstXI	CCANNNNNNTGG	1 cut(s)	765
BstYI	RGATCY	1 cut(s)	891
Bsu36I	CCTNAGG	1 cut(s)	543
BsuRI	GGCC	3 cut(s)	139, 219, 617
BtsCI	GGATG	1 cut(s)	1028
BtsIMutI	CAGTG	2 cut(s)	700, 858
Cac8I	GCNNGC	3 cut(s)	556, 824, 972
CaiI	CAGNNNCTG	1 cut(s)	860
CciI	TCATGA	1 cut(s)	30
Cfr13I	GGNCC	3 cut(s)	239, 465, 547
CseI	GACGC	1 cut(s)	976
Csp6I	GTAC	2 cut(s)	292, 805
CviAII	CATG	6 cut(s)	31, 148, 613, 883, 915, 920
CviQI	GTAC	2 cut(s)	292, 805
DdeI	CTNAG	5 cut(s)	212, 227, 543, 797, 895
DpnI	GATC	8 cut(s)	155, 225, 456, 746, 782, 790, 893, 960
DpnII	GATC	8 cut(s)	153, 223, 454, 744, 780, 788, 891, 958
DraIII	CACNNNGTG	1 cut(s)	254
DrdI	GACNNNNNNGTC	1 cut(s)	602
DseDI	GACNNNNNNGTC	1 cut(s)	602
EaeI	YGGCCR	1 cut(s)	615
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Eco130I	CCWWGG	1 cut(s)	520
Eco147I	AGGCCT	1 cut(s)	219
Eco32I	GATATC	1 cut(s)	496
Eco47I	GGWCC	3 cut(s)	239, 465, 547
Eco57I	CTGAAG	3 cut(s)	354, 649, 793
Eco81I	CCTNAGG	1 cut(s)	543
EcoO109I	RGGNCCY	1 cut(s)	465
EcoRV	GATATC	1 cut(s)	496
EcoT14I	CCWWGG	1 cut(s)	520
EcoT22I	ATGCAT	1 cut(s)	888
ErhI	CCWWGG	1 cut(s)	520
FaeI	CATG	6 cut(s)	34, 151, 616, 886, 918, 923
FaqI	GGGAC	2 cut(s)	852, 883
FatI	CATG	6 cut(s)	30, 147, 612, 882, 914, 919
FbaI	TGATCA	1 cut(s)	153
Fnu4HI	GCNGC	1 cut(s)	145
FokI	GGATG	1 cut(s)	1015
Fsp4HI	GCNGC	1 cut(s)	145
FspBI	CTAG	4 cut(s)	314, 335, 555, 1090
GluI	GCNGC	1 cut(s)	145
GsaI	CCCAGC	1 cut(s)	1027
HaeIII	GGCC	3 cut(s)	139, 219, 617
HgaI	GACGC	1 cut(s)	976
Hin1II	CATG	6 cut(s)	34, 151, 616, 886, 918, 923
HincII	GTYRAC	1 cut(s)	966
HindII	GTYRAC	1 cut(s)	966
HinfI	GANTC	1 cut(s)	365
HphI	GGTGA	6 cut(s)	74, 93, 163, 393, 649, 659
Hpy166II	GTNNAC	1 cut(s)	966
Hpy188I	TCNGA	5 cut(s)	215, 454, 668, 812, 898
Hpy188III	TCNNGA	7 cut(s)	31, 110, 157, 458, 483, 499, 542
Hpy8I	GTNNAC	1 cut(s)	966
HpyAV	CCTTC	3 cut(s)	129, 154, 489
HpyCH4III	ACNGT	3 cut(s)	830, 843, 862
HpyCH4V	TGCA	7 cut(s)	287, 306, 586, 822, 886, 935, 1002
HpyF10VI	GCNNNNNNNGC	3 cut(s)	925, 1041, 1085
HpyF3I	CTNAG	5 cut(s)	212, 227, 543, 797, 895
Hsp92II	CATG	6 cut(s)	34, 151, 616, 886, 918, 923
Ksp22I	TGATCA	1 cut(s)	153
Kzo9I	GATC	8 cut(s)	153, 223, 454, 744, 780, 788, 891, 958
LmnI	GCTCC	1 cut(s)	475
Lsp1109I	GCAGC	1 cut(s)	156
LweI	GCATC	5 cut(s)	249, 619, 697, 922, 1044
MaeI	CTAG	4 cut(s)	314, 335, 555, 1090
MaeIII	GTNAC	4 cut(s)	399, 412, 653, 695
MalI	GATC	8 cut(s)	155, 225, 456, 746, 782, 790, 893, 960
MboI	GATC	8 cut(s)	153, 223, 454, 744, 780, 788, 891, 958
MboII	GAAGA	6 cut(s)	332, 360, 374, 504, 655, 825
MflI	RGATCY	1 cut(s)	891
MlsI	TGGCCA	1 cut(s)	617
MluCI	AATT	5 cut(s)	339, 526, 619, 673, 719
MluNI	TGGCCA	1 cut(s)	617
MmeI	TCCRAC	2 cut(s)	750, 753
Mox20I	TGGCCA	1 cut(s)	617
Mph1103I	ATGCAT	1 cut(s)	888
MscI	TGGCCA	1 cut(s)	617
MseI	TTAA	2 cut(s)	45, 1008
Msp20I	TGGCCA	1 cut(s)	617
MspCI	CTTAAG	1 cut(s)	44
MwoI	GCNNNNNNNGC	3 cut(s)	925, 1041, 1085
NdeII	GATC	8 cut(s)	153, 223, 454, 744, 780, 788, 891, 958
NheI	GCTAGC	1 cut(s)	554
NlaIII	CATG	6 cut(s)	34, 151, 616, 886, 918, 923
NlaIV	GGNNCC	2 cut(s)	467, 477
NmuCI	GTSAC	3 cut(s)	399, 412, 695
NsiI	ATGCAT	1 cut(s)	888
NspI	RCATGY	1 cut(s)	923
PagI	TCATGA	1 cut(s)	30
PceI	AGGCCT	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	365
PflMI	CCANNNNNTGG	2 cut(s)	76, 888
PkrI	GCNGC	1 cut(s)	146
PpuMI	RGGWCCY	1 cut(s)	465
PshAI	GACNNNNGTC	1 cut(s)	689
Psp5II	RGGWCCY	1 cut(s)	465
PspFI	CCCAGC	1 cut(s)	1023
PspN4I	GGNNCC	2 cut(s)	467, 477
PspPI	GGNCC	3 cut(s)	239, 465, 547
PspPPI	RGGWCCY	1 cut(s)	465
PstNI	CAGNNNCTG	1 cut(s)	860
PsuI	RGATCY	1 cut(s)	891
RsaI	GTAC	2 cut(s)	293, 806
RsaNI	GTAC	2 cut(s)	292, 805
SaqAI	TTAA	2 cut(s)	45, 1008
SatI	GCNGC	1 cut(s)	145
Sau3AI	GATC	8 cut(s)	153, 223, 454, 744, 780, 788, 891, 958
Sau96I	GGNCC	3 cut(s)	239, 465, 547
ScaI	AGTACT	1 cut(s)	806
SetI	ASST	6 cut(s)	241, 327, 396, 429, 549, 556
SfaNI	GCATC	5 cut(s)	249, 619, 697, 922, 1044
SinI	GGWCC	3 cut(s)	239, 465, 547
SmlI	CTYRAG	3 cut(s)	44, 108, 395
SmoI	CTYRAG	3 cut(s)	44, 108, 395
Sse9I	AATT	5 cut(s)	339, 526, 619, 673, 719
SseBI	AGGCCT	1 cut(s)	219
SsiI	CCGC	1 cut(s)	982
SspMI	CTAG	4 cut(s)	314, 335, 555, 1090
StuI	AGGCCT	1 cut(s)	219
StyI	CCWWGG	1 cut(s)	520
TaaI	ACNGT	3 cut(s)	830, 843, 862
TasI	AATT	5 cut(s)	339, 526, 619, 673, 719
TatI	WGTACW	1 cut(s)	804
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	2 cut(s)	45, 1008
Tru9I	TTAA	2 cut(s)	45, 1008
TscAI	CASTG	2 cut(s)	700, 865
TseFI	GTSAC	3 cut(s)	399, 412, 695
TseI	GCWGC	1 cut(s)	144
Tsp45I	GTSAC	3 cut(s)	399, 412, 695
TspDTI	ATGAA	4 cut(s)	47, 375, 504, 601
TspRI	CASTG	2 cut(s)	700, 865
Van91I	CCANNNNNTGG	2 cut(s)	76, 888
Vha464I	CTTAAG	1 cut(s)	44
VpaK11BI	GGWCC	3 cut(s)	239, 465, 547
XapI	RAATTY	1 cut(s)	719
XceI	RCATGY	1 cut(s)	923
XspI	CTAG	4 cut(s)	314, 335, 555, 1090
ZrmI	AGTACT	1 cut(s)	806
Zsp2I	ATGCAT	1 cut(s)	888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.