Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0014115

Physical Location & Seq

Genomic Coordinates Forward (+)

26914134 .. 26920094

Gene Structure 5961 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g24980.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGGCAAGCTGTGCAGTTCACGGTGGCTGTGTCAGCGACTACATAGCCGTCACTGTTTCAGCCATTTGCTTCATTCTGCTTGTTTCGCGGCTACTTTTGCCCTTTGTGCTTCACAAACTTCCTTGTGCGAAGCGTAGTGGCTTTTGGATTCCAGTGATTCAAGTTTTCGCCAGCTTCAACCTTGTGTTATCAATTGTGATGTCCATCAATTTCCTGAAATTCGAAAAGAGACATTGGTGGCAGTCTTGCTATGTTTGGGCAGTCTGGATTGAAGCTCCACTTGGCTTTGGTTTGCTAATGAGCTGTCGCATATCACAGGCCTTTCAACTATACTACATTTTTGTCAAGAGGTGTCTGCCACCAATCAGATCATATGTTTTCCTTCCACTAATTCTCTTGCCATGGATTGCTGGAGCTGCCTTTATCCATATCACAAAGCCTCTAAATTATCGGTGCCACATGGGAGCTCAGTGGATCATTCCGTCTGTGTCCCTCCACACAACATATGTTGCCATTTTGGTTGCTTTCACTTGTGCTATTCGGCATATAGAGTTCAGGTTTGACGAACTCAGAGACCTCTGGCAGGGAATACTTGTCTCGGCCTCTGCTATTGGAGTATGGGCGGTTGCATACATCTTGAATGAAATTCATGATGATATCTCATGGCTTCAAGTTGCTTCCAGATTTGTGCTCTTAGTAACGACGAGTATTCTTGTATTAGCTTTCTTTTCGATATCAAGTTCACAACCTCTTCTATCCCAAATCAGCTTGAGGAAAAGGGAACCTCAAGCATTTGAGTCAATGGGTCAGGCCCTGGGCATACCTGACAGCGGCCTGTTAGTACAAAGGGAAAAGGCATGTGTCGTGGATCCTAATGAACCACTTGATAAACTTCTTCTTAACAAAAGATTCCGCCACTCATTCATGGCATTTGCGGACAGTTGTTTGGCAGGGGAGAGTGTCCATTTTTTCGAGGAAGTGCATGAACTTGGTAAAATACCTGTGGATGACCCCGTAAGAAGAATTTACATGTCACGGCATATCATTGACAAGTACATAATTGCAGGGGCAGCAATGGAGGTGAACATCTCTCACAGAACCAGACAAGATATTTTGACAACTTCCAATCTAGCACAACCAAATCTTTTTAATGATGCATTAACTGAGCTTACACACTTGATGAATACGAACTTGGCAAGAGATTACTGGTCATCTATGTTATTCATGAAGTTCAAAGAAGAAGCGAGTATGAGATCTGGGGACAATGAACTGGAACAGATGAGAAGCTGGAACTACTCTCCCAGGTTGAGTTCTGTACATGGTGCTGATGATCCATTTCACCAAGAACAAGAACCATTTGCGGTTGATTCTGGCTGCATACTCAAAACCACGATGATGAACCAAGATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0004930 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005886 GO:0006950 GO:0007154 GO:0007165 GO:0007186 GO:0008047 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009987 GO:0010008 GO:0010033 GO:0010035 GO:0010182 GO:0012505 GO:0016020 GO:0023052 GO:0030234 GO:0030695 GO:0031090 GO:0031410 GO:0031982 GO:0033993 GO:0034284 GO:0038023 GO:0042127 GO:0042221 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051345 GO:0051716 GO:0060089 GO:0060589 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071322 GO:0071944 GO:0097305 GO:0097708 GO:0098588 GO:0098772 GO:0098805 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RGS

Protein Analysis

471

Amino Acids

53.47

Weight (kDa)

6.96

Isoelectric Point (pI)

54.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RGS	PF00615	295 - 411	4.9e-11	Regulator of G protein signaling domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26090 AT3G26090
fragaria_vesca	FvH4_4g24980
malus_domestica	MD13G1107500.v1.1 MD16G1107500.v1.1
prunus_persica	Prupe.1G238900_v2.0.a1
pyrus_communis	pycom13g09310 pycom16g09160
rosa_chinensis	RchiOBHm_Chr4g0432041
rosa_laevigata	RLG00000006867
rosa_multiflora	Rmu_sc0004965.1_g000023
rosa_roxburghii	Rroxscaffold_5G00373590
rosa_rugosa	Rorug04G0254400
rosa_samantha	Rh4AG311700 Rh4BG318900 Rh4CG334400
rosa_wichuraiana	Rw4G027100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	453
AccII	CGCG	1 cut(s)	88
AciI	CCGC	6 cut(s)	88, 623, 831, 913, 935, 1361
AclWI	GGATC	4 cut(s)	482, 863, 876, 1325
AcsI	RAATTY	3 cut(s)	218, 645, 1023
AfaI	GTAC	3 cut(s)	843, 1055, 1317
AfiI	CCNNNNNNNGG	2 cut(s)	583, 830
AflIII	ACRYGT	1 cut(s)	1029
AgsI	TTSAA	7 cut(s)	161, 178, 272, 326, 640, 671, 1234
AjnI	CCWGG	2 cut(s)	813, 1301
AjuI	GAANNNNNNNTTGG	4 cut(s)	264, 296, 1175, 1207
Alw21I	GWGCWC	2 cut(s)	469, 693
Alw26I	GTCTC	3 cut(s)	223, 567, 601
AlwI	GGATC	4 cut(s)	482, 863, 876, 1325
AlwNI	CAGNNNCTG	1 cut(s)	814
AoxI	GGCC	4 cut(s)	318, 600, 810, 832
ApeKI	GCWGC	3 cut(s)	416, 1070, 1374
ApoI	RAATTY	3 cut(s)	218, 645, 1023
AspS9I	GGNCC	1 cut(s)	811
AsuHPI	GGTGA	2 cut(s)	1093, 1331
AsuII	TTCGAA	1 cut(s)	222
BamHI	GGATCC	1 cut(s)	868
BanI	GGYRCC	1 cut(s)	453
BanII	GRGCYC	1 cut(s)	469
Bbv12I	GWGCWC	2 cut(s)	469, 693
BbvI	GCAGC	3 cut(s)	403, 1082, 1361
BccI	CCATC	1 cut(s)	212
BceAI	ACGGC	2 cut(s)	32, 1052
BciT130I	CCWGG	2 cut(s)	815, 1303
BcoDI	GTCTC	3 cut(s)	223, 567, 601
BfaI	CTAG	1 cut(s)	1130
BglII	AGATCT	1 cut(s)	1253
BisI	GCNGC	5 cut(s)	89, 417, 832, 1071, 1375
BlsI	GCNGC	5 cut(s)	90, 418, 833, 1072, 1376
Bme1390I	CCNGG	2 cut(s)	815, 1303
BmgT120I	GGNCC	1 cut(s)	811
BmiI	GGNNCC	3 cut(s)	455, 783, 870
BmrFI	CCNGG	2 cut(s)	815, 1303
BmsI	GCATC	1 cut(s)	1144
BpmI	CTGGAG	1 cut(s)	432
Bpu14I	TTCGAA	1 cut(s)	222
BpuEI	CTTGAG	2 cut(s)	771, 790
BsaBI	GATNNNNATC	1 cut(s)	203
BsaI	GGTCTC	1 cut(s)	567
BsaJI	CCNNGG	4 cut(s)	401, 813, 814, 1301
Bsc4I	CCNNNNNNNGG	2 cut(s)	583, 830
Bse1I	ACTGG	3 cut(s)	152, 1211, 1275
Bse3DI	GCAATG	1 cut(s)	1080
Bse8I	GATNNNNATC	1 cut(s)	203
BseBI	CCWGG	2 cut(s)	815, 1303
BseDI	CCNNGG	4 cut(s)	401, 813, 814, 1301
BseGI	GGATG	1 cut(s)	1012
BseJI	GATNNNNATC	1 cut(s)	203
BseLI	CCNNNNNNNGG	2 cut(s)	583, 830
BseMI	GCAATG	1 cut(s)	1080
BseMII	CTCAG	3 cut(s)	482, 583, 1155
BseNI	ACTGG	3 cut(s)	152, 1211, 1275
BseXI	GCAGC	3 cut(s)	403, 1082, 1361
BsgI	GTGCAG	1 cut(s)	33
Bsh1236I	CGCG	1 cut(s)	88
BshFI	GGCC	4 cut(s)	320, 602, 812, 834
BshNI	GGYRCC	1 cut(s)	453
BsiHKAI	GWGCWC	2 cut(s)	469, 693
BslFI	GGGAC	2 cut(s)	475, 1274
BslI	CCNNNNNNNGG	2 cut(s)	583, 830
BsmAI	GTCTC	3 cut(s)	223, 567, 601
BsmFI	GGGAC	2 cut(s)	475, 1274
BsnI	GGCC	4 cut(s)	320, 602, 812, 834
Bso31I	GGTCTC	1 cut(s)	567
Bsp119I	TTCGAA	1 cut(s)	222
Bsp1286I	GDGCHC	2 cut(s)	469, 693
Bsp1407I	TGTACA	1 cut(s)	1315
Bsp143I	GATC	5 cut(s)	368, 474, 868, 1253, 1330
Bsp19I	CCATGG	1 cut(s)	401
BspACI	CCGC	6 cut(s)	88, 623, 831, 913, 935, 1361
BspANI	GGCC	4 cut(s)	320, 602, 812, 834
BspCNI	CTCAG	3 cut(s)	481, 582, 1156
BspFNI	CGCG	1 cut(s)	88
BspHI	TCATGA	3 cut(s)	649, 1224, 1409
BspLI	GGNNCC	3 cut(s)	455, 783, 870
BspPI	GGATC	4 cut(s)	482, 863, 876, 1325
BspT104I	TTCGAA	1 cut(s)	222
BspT107I	GGYRCC	1 cut(s)	453
BspTNI	GGTCTC	1 cut(s)	567
BsrDI	GCAATG	1 cut(s)	1080
BsrGI	TGTACA	1 cut(s)	1315
BsrI	ACTGG	3 cut(s)	152, 1211, 1275
BssECI	CCNNGG	4 cut(s)	401, 813, 814, 1301
BssMI	GATC	5 cut(s)	368, 474, 868, 1253, 1330
BssT1I	CCWWGG	1 cut(s)	401
Bst2UI	CCWGG	2 cut(s)	815, 1303
Bst4CI	ACNGT	3 cut(s)	23, 55, 941
Bst6I	CTCTTC	1 cut(s)	756
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstAUI	TGTACA	1 cut(s)	1315
BstBI	TTCGAA	1 cut(s)	222
BstC8I	GCNNGC	2 cut(s)	7, 172
BstDEI	CTNAG	4 cut(s)	468, 569, 694, 1164
BstDSI	CCRYGG	1 cut(s)	401
BstENI	CCTNNNNNAGG	1 cut(s)	581
BstF5I	GGATG	1 cut(s)	1012
BstFNI	CGCG	1 cut(s)	88
BstKTI	GATC	5 cut(s)	371, 477, 871, 1256, 1333
BstMAI	GTCTC	3 cut(s)	223, 567, 601
BstMBI	GATC	5 cut(s)	368, 474, 868, 1253, 1330
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 33, 85, 97, 106, 416, 1070
BstNI	CCWGG	2 cut(s)	815, 1303
BstNSI	RCATGY	2 cut(s)	861, 1033
BstSCI	CCNGG	2 cut(s)	813, 1301
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	3 cut(s)	403, 1082, 1361
BstX2I	RGATCY	2 cut(s)	868, 1253
BstYI	RGATCY	2 cut(s)	868, 1253
BsuRI	GGCC	4 cut(s)	320, 602, 812, 834
BtgI	CCRYGG	1 cut(s)	401
BtsCI	GGATG	1 cut(s)	1012
BtsIMutI	CAGTG	3 cut(s)	51, 159, 476
Cac8I	GCNNGC	2 cut(s)	7, 172
CaiI	CAGNNNCTG	1 cut(s)	814
CciI	TCATGA	3 cut(s)	649, 1224, 1409
Cfr13I	GGNCC	1 cut(s)	811
Csp6I	GTAC	3 cut(s)	842, 1054, 1316
CviQI	GTAC	3 cut(s)	842, 1054, 1316
DdeI	CTNAG	4 cut(s)	468, 569, 694, 1164
DpnI	GATC	5 cut(s)	370, 476, 870, 1255, 1332
DpnII	GATC	5 cut(s)	368, 474, 868, 1253, 1330
Eam1104I	CTCTTC	1 cut(s)	756
EarI	CTCTTC	1 cut(s)	756
EciI	GGCGGA	1 cut(s)	902
Ecl136II	GAGCTC	1 cut(s)	467
Eco130I	CCWWGG	1 cut(s)	401
Eco147I	AGGCCT	1 cut(s)	320
Eco24I	GRGCYC	1 cut(s)	469
Eco31I	GGTCTC	1 cut(s)	567
Eco32I	GATATC	2 cut(s)	658, 735
Eco53kI	GAGCTC	1 cut(s)	467
EcoICRI	GAGCTC	1 cut(s)	467
EcoNI	CCTNNNNNAGG	1 cut(s)	581
EcoO109I	RGGNCCY	1 cut(s)	811
EcoRII	CCWGG	2 cut(s)	813, 1301
EcoRV	GATATC	2 cut(s)	658, 735
EcoT14I	CCWWGG	1 cut(s)	401
EcoT22I	ATGCAT	1 cut(s)	1159
EcoT38I	GRGCYC	1 cut(s)	469
ErhI	CCWWGG	1 cut(s)	401
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FaqI	GGGAC	2 cut(s)	475, 1274
FauNDI	CATATG	2 cut(s)	373, 505
Fnu4HI	GCNGC	5 cut(s)	89, 417, 832, 1071, 1375
FokI	GGATG	1 cut(s)	1019
FriOI	GRGCYC	1 cut(s)	469
Fsp4HI	GCNGC	5 cut(s)	89, 417, 832, 1071, 1375
FspBI	CTAG	1 cut(s)	1130
GluI	GCNGC	5 cut(s)	89, 417, 832, 1071, 1375
GsuI	CTGGAG	1 cut(s)	432
HaeIII	GGCC	4 cut(s)	320, 602, 812, 834
HinfI	GANTC	6 cut(s)	148, 157, 797, 909, 1367, 1406
HphI	GGTGA	2 cut(s)	1093, 1331
Hpy166II	GTNNAC	3 cut(s)	19, 743, 1084
Hpy188I	TCNGA	2 cut(s)	368, 572
Hpy188III	TCNNGA	8 cut(s)	214, 265, 346, 637, 650, 681, 1225, 1410
Hpy8I	GTNNAC	3 cut(s)	19, 743, 1084
Hpy99I	CGWCG	1 cut(s)	706
HpyAV	CCTTC	1 cut(s)	392
HpyCH4III	ACNGT	3 cut(s)	23, 55, 941
HpyCH4V	TGCA	6 cut(s)	14, 629, 982, 1064, 1157, 1377
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 33, 85, 97, 106, 416, 1070
HpyF3I	CTNAG	4 cut(s)	468, 569, 694, 1164
Kzo9I	GATC	5 cut(s)	368, 474, 868, 1253, 1330
LmnI	GCTCC	3 cut(s)	280, 413, 464
Lsp1109I	GCAGC	3 cut(s)	403, 1082, 1361
LweI	GCATC	1 cut(s)	1144
MaeI	CTAG	1 cut(s)	1130
MaeIII	GTNAC	3 cut(s)	49, 697, 1032
MalI	GATC	5 cut(s)	370, 476, 870, 1255, 1332
MboI	GATC	5 cut(s)	368, 474, 868, 1253, 1330
MboII	GAAGA	4 cut(s)	743, 887, 1032, 1250
MfeI	CAATTG	1 cut(s)	192
MflI	RGATCY	2 cut(s)	868, 1253
MhlI	GDGCHC	2 cut(s)	469, 693
MluCI	AATT	8 cut(s)	192, 208, 218, 390, 445, 645, 1023, 1059
MlyI	GAGTC	1 cut(s)	806
Mph1103I	ATGCAT	1 cut(s)	1159
MseI	TTAA	3 cut(s)	900, 1149, 1160
MslI	CAYNNNNRTG	1 cut(s)	1394
MspA1I	CMGCKG	1 cut(s)	831
MspR9I	CCNGG	2 cut(s)	815, 1303
MunI	CAATTG	1 cut(s)	192
MvaI	CCWGG	2 cut(s)	815, 1303
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	7 cut(s)	11, 33, 85, 97, 106, 416, 1070
NcoI	CCATGG	1 cut(s)	401
NdeI	CATATG	2 cut(s)	373, 505
NdeII	GATC	5 cut(s)	368, 474, 868, 1253, 1330
NlaIV	GGNNCC	3 cut(s)	455, 783, 870
NmeAIII	GCCGAG	1 cut(s)	578
NmuCI	GTSAC	2 cut(s)	49, 1032
NsiI	ATGCAT	1 cut(s)	1159
NspI	RCATGY	2 cut(s)	861, 1033
NspV	TTCGAA	1 cut(s)	222
PagI	TCATGA	3 cut(s)	649, 1224, 1409
PasI	CCCWGGG	1 cut(s)	814
PceI	AGGCCT	1 cut(s)	320
PciI	ACATGT	1 cut(s)	1029
PfeI	GAWTC	5 cut(s)	148, 157, 909, 1367, 1406
PkrI	GCNGC	5 cut(s)	90, 418, 833, 1072, 1376
PleI	GAGTC	1 cut(s)	805
PpsI	GAGTC	1 cut(s)	805
PscI	ACATGT	1 cut(s)	1029
Psp124BI	GAGCTC	1 cut(s)	469
Psp6I	CCWGG	2 cut(s)	813, 1301
PspGI	CCWGG	2 cut(s)	813, 1301
PspN4I	GGNNCC	3 cut(s)	455, 783, 870
PspPI	GGNCC	1 cut(s)	811
PstNI	CAGNNNCTG	1 cut(s)	814
PsuI	RGATCY	2 cut(s)	868, 1253
RsaI	GTAC	3 cut(s)	843, 1055, 1317
RsaNI	GTAC	3 cut(s)	842, 1054, 1316
RseI	CAYNNNNRTG	1 cut(s)	1394
SacI	GAGCTC	1 cut(s)	469
SaqAI	TTAA	3 cut(s)	900, 1149, 1160
SatI	GCNGC	5 cut(s)	89, 417, 832, 1071, 1375
Sau3AI	GATC	5 cut(s)	368, 474, 868, 1253, 1330
Sau96I	GGNCC	1 cut(s)	811
SchI	GAGTC	1 cut(s)	806
ScrFI	CCNGG	2 cut(s)	815, 1303
SduI	GDGCHC	2 cut(s)	469, 693
SfaNI	GCATC	1 cut(s)	1144
SfuI	TTCGAA	1 cut(s)	222
SmiMI	CAYNNNNRTG	1 cut(s)	1394
SmlI	CTYRAG	2 cut(s)	769, 786
SmoI	CTYRAG	2 cut(s)	769, 786
Sse9I	AATT	8 cut(s)	192, 208, 218, 390, 445, 645, 1023, 1059
SseBI	AGGCCT	1 cut(s)	320
SsiI	CCGC	6 cut(s)	88, 623, 831, 913, 935, 1361
SspMI	CTAG	1 cut(s)	1130
SstI	GAGCTC	1 cut(s)	469
StuI	AGGCCT	1 cut(s)	320
StyD4I	CCNGG	2 cut(s)	813, 1301
StyI	CCWWGG	1 cut(s)	401
TaaI	ACNGT	3 cut(s)	23, 55, 941
TaqI	TCGA	3 cut(s)	222, 731, 972
TasI	AATT	8 cut(s)	192, 208, 218, 390, 445, 645, 1023, 1059
TatI	WGTACW	3 cut(s)	841, 1053, 1315
TauI	GCSGC	2 cut(s)	91, 834
TfiI	GAWTC	5 cut(s)	148, 157, 909, 1367, 1406
Tru1I	TTAA	3 cut(s)	900, 1149, 1160
Tru9I	TTAA	3 cut(s)	900, 1149, 1160
TscAI	CASTG	3 cut(s)	58, 159, 476
TseFI	GTSAC	2 cut(s)	49, 1032
TseI	GCWGC	3 cut(s)	416, 1070, 1374
Tsp45I	GTSAC	2 cut(s)	49, 1032
TspGWI	ACGGA	1 cut(s)	471
TspRI	CASTG	3 cut(s)	58, 159, 476
XagI	CCTNNNNNAGG	1 cut(s)	581
XapI	RAATTY	3 cut(s)	218, 645, 1023
XceI	RCATGY	2 cut(s)	861, 1033
XspI	CTAG	1 cut(s)	1130
Zsp2I	ATGCAT	1 cut(s)	1159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.