Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0014115

Physical Location & Seq

Genomic Coordinates Reverse (-)

11253416 .. 11257589

Gene Structure 4174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006867

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGTCTCTCAATTTCCTGAAATTTGAAAAGAGACATTGGTGGCAGTCTTGCTACGTCTGGGCAGTCTGGATTGAAGCTCCACTTGGCTTTGGTTTGCTGCTGAGCTGTCGCATATCACAGGCCTTTCAACTATATTATATTTTTGTCAAGAGGTGTCTGCCGCCAATCAGATCATATGTTTTCCTTCCACTAATTCTCTCGCCCTGGATTACTGGAGCTGCATTTATCCATATCACAAAGCCTCTAAATTATCGGTGCCACATGGGGGCTCAGTGGATCATCCCGTCTATGTCCCTCCACACAACATATGTTGTCATTTTGGTTGCTTTCACTTGTGCTATTCGGCATATAGAGTTCAGGTTTGACGAACTCAGAGACCTCTGGCAGGGAATACTTGTCTCAGCCTCTTCTATTGGAGTATGGGTGGTTGCATACGTTTTGAATGAAATTCATGATGAAATCTCATGGCTTCAAGTTGCCTCCAGATTTGTGCTCTTAGTAACGACAAGCATTCTTGTATTAGCTATCTTTTCGATATCAAGTTCACAACCTCTTCTATCGCAAATCAGCTTGAGGAAAAGGGAACCTCGAGCATATGAGTCAATGGGCCAGGCTCTGGGCATACCTGACAGTGGACTGTTAGTGCAAAGGGAACCAGCATGTGTCGTAGATCCTAATGAACCACTTGATAAACTTCTTCTAAACAAAAGATTCCGCCAGTCATTCATGGCATTTGCAGACAGTTGTTCGGCAGGGGAGAGTGTCCATTTTTTTGAGGAAGTGCATGAACTCGGTAAAATACCTGTGGATGACCCTGTAAGAAGAATTTACATGGCACGCCATATCATTGACAAGTACATAATTGCAGGGGCGGCAGTGGAGGTGAACATCTCTCACAGAACCAGACAAGAGATCTTGACTACTTCCAACCTGGCACAACCAAATCTTTTTAATGACGCGTTAACTGAGCTAATACACTTGATGAAAATGAACTTGGCAAGAGATTACTGGTCATCTATGTTCTTCATGAAGTTGAAAGAAGAAGTGAGTATGAGATCCGGGGGCCAAGAACTGGAACAGATGAGAGGTTGGAACTACTCTCCCAGGTTGAGTTCTGTACATGGTGCTGATGATCCATTTCACCAAGAACAAGAACCATTTTCGATTGATTCTGGCTGCAACACTGAAGACCATGATGATGAACCAAGAATCATGAGTAAATTCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0004930 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005886 GO:0006950 GO:0007154 GO:0007165 GO:0007186 GO:0008047 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009987 GO:0010008 GO:0010033 GO:0010035 GO:0010182 GO:0012505 GO:0016020 GO:0023052 GO:0030234 GO:0030695 GO:0031090 GO:0031410 GO:0031982 GO:0033993 GO:0034284 GO:0038023 GO:0042127 GO:0042221 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051345 GO:0051716 GO:0060089 GO:0060589 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071322 GO:0071944 GO:0097305 GO:0097708 GO:0098588 GO:0098772 GO:0098805 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RGS

Protein Analysis

410

Amino Acids

47.05

Weight (kDa)

6.28

Isoelectric Point (pI)

60.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RGS	PF00615	229 - 344	7.5e-13	Regulator of G protein signaling domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26090 AT3G26090
fragaria_vesca	FvH4_4g24980
malus_domestica	MD13G1107500.v1.1 MD16G1107500.v1.1
prunus_persica	Prupe.1G238900_v2.0.a1
pyrus_communis	pycom13g09310 pycom16g09160
rosa_chinensis	RchiOBHm_Chr4g0432041
rosa_laevigata	RLG00000006867
rosa_multiflora	Rmu_sc0004965.1_g000023
rosa_roxburghii	Rroxscaffold_5G00373590
rosa_rugosa	Rorug04G0254400
rosa_samantha	Rh4AG311700 Rh4BG318900 Rh4CG334400
rosa_wichuraiana	Rw4G027100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	255
AccB7I	CCANNNNNTGG	2 cut(s)	616, 1072
AccII	CGCG	1 cut(s)	959
AciI	CCGC	3 cut(s)	161, 715, 872
AclWI	GGATC	4 cut(s)	284, 665, 1050, 1127
AcsI	RAATTY	4 cut(s)	20, 447, 825, 1220
AcuI	CTGAAG	1 cut(s)	1206
AfaI	GTAC	2 cut(s)	857, 1119
AfiI	CCNNNNNNNGG	5 cut(s)	265, 385, 616, 632, 1072
AflIII	ACRYGT	1 cut(s)	957
AgsI	TTSAA	6 cut(s)	26, 74, 128, 442, 473, 1036
AjnI	CCWGG	4 cut(s)	203, 609, 930, 1103
AjuI	GAANNNNNNNTTGG	4 cut(s)	66, 98, 977, 1009
AluBI	AGCT	6 cut(s)	77, 105, 218, 524, 570, 970
AluI	AGCT	6 cut(s)	77, 105, 218, 524, 570, 970
Alw21I	GWGCWC	1 cut(s)	495
Alw26I	GTCTC	4 cut(s)	9, 25, 369, 403
AlwI	GGATC	4 cut(s)	284, 665, 1050, 1127
AlwNI	CAGNNNCTG	1 cut(s)	616
Ama87I	CYCGRG	1 cut(s)	588
AoxI	GGCC	3 cut(s)	120, 607, 1063
ApeKI	GCWGC	3 cut(s)	97, 218, 1176
ApoI	RAATTY	4 cut(s)	20, 447, 825, 1220
AspS9I	GGNCC	2 cut(s)	607, 1063
AsuC2I	CCSGG	1 cut(s)	1060
AsuHPI	GGTGA	2 cut(s)	895, 1133
AvaI	CYCGRG	1 cut(s)	588
BanI	GGYRCC	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	1194
Bbv12I	GWGCWC	1 cut(s)	495
BbvI	GCAGC	3 cut(s)	84, 205, 1163
BciT130I	CCWGG	4 cut(s)	205, 611, 932, 1105
BcnI	CCSGG	1 cut(s)	1060
BcoDI	GTCTC	4 cut(s)	9, 25, 369, 403
BglII	AGATCT	1 cut(s)	912
BisI	GCNGC	5 cut(s)	98, 161, 219, 873, 1177
BlpI	GCTNAGC	1 cut(s)	101
BlsI	GCNGC	5 cut(s)	99, 162, 220, 874, 1178
Bme1390I	CCNGG	5 cut(s)	205, 611, 932, 1060, 1105
BmeT110I	CYCGRG	1 cut(s)	588
BmgT120I	GGNCC	2 cut(s)	607, 1063
BmiI	GGNNCC	4 cut(s)	257, 585, 654, 1064
BmrFI	CCNGG	5 cut(s)	205, 611, 932, 1060, 1105
BpiI	GAAGAC	1 cut(s)	1194
BpmI	CTGGAG	2 cut(s)	234, 466
Bpu1102I	GCTNAGC	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	592
BpuMI	CCSGG	1 cut(s)	1060
BsaI	GGTCTC	1 cut(s)	369
BsaJI	CCNNGG	3 cut(s)	203, 1059, 1103
BsaXI	ACNNNNNCTCC	2 cut(s)	408, 438
Bsc4I	CCNNNNNNNGG	5 cut(s)	265, 385, 616, 632, 1072
Bse1I	ACTGG	4 cut(s)	217, 718, 1013, 1077
BseBI	CCWGG	4 cut(s)	205, 611, 932, 1105
BseDI	CCNNGG	3 cut(s)	203, 1059, 1103
BseGI	GGATG	2 cut(s)	279, 814
BseLI	CCNNNNNNNGG	5 cut(s)	265, 385, 616, 632, 1072
BseMII	CTCAG	5 cut(s)	92, 284, 385, 414, 957
BseNI	ACTGG	4 cut(s)	217, 718, 1013, 1077
BseXI	GCAGC	3 cut(s)	84, 205, 1163
Bsh1236I	CGCG	1 cut(s)	959
BshFI	GGCC	3 cut(s)	122, 609, 1065
BshNI	GGYRCC	1 cut(s)	255
BsiHKAI	GWGCWC	1 cut(s)	495
BsiHKCI	CYCGRG	1 cut(s)	588
BsiSI	CCGG	1 cut(s)	1059
BslFI	GGGAC	1 cut(s)	277
BslI	CCNNNNNNNGG	5 cut(s)	265, 385, 616, 632, 1072
BsmAI	GTCTC	4 cut(s)	9, 25, 369, 403
BsmFI	GGGAC	1 cut(s)	277
BsmI	GAATGC	1 cut(s)	510
BsnI	GGCC	3 cut(s)	122, 609, 1065
Bso31I	GGTCTC	1 cut(s)	369
BsoBI	CYCGRG	1 cut(s)	588
Bsp1286I	GDGCHC	2 cut(s)	271, 495
Bsp1407I	TGTACA	1 cut(s)	1117
Bsp143I	GATC	6 cut(s)	170, 276, 670, 912, 1055, 1132
Bsp1720I	GCTNAGC	1 cut(s)	101
BspACI	CCGC	3 cut(s)	161, 715, 872
BspANI	GGCC	3 cut(s)	122, 609, 1065
BspCNI	CTCAG	5 cut(s)	93, 283, 384, 413, 958
BspFNI	CGCG	1 cut(s)	959
BspHI	TCATGA	3 cut(s)	451, 1026, 1212
BspLI	GGNNCC	4 cut(s)	257, 585, 654, 1064
BspPI	GGATC	4 cut(s)	284, 665, 1050, 1127
BspT107I	GGYRCC	1 cut(s)	255
BspTNI	GGTCTC	1 cut(s)	369
BsrGI	TGTACA	1 cut(s)	1117
BsrI	ACTGG	4 cut(s)	217, 718, 1013, 1077
BssECI	CCNNGG	3 cut(s)	203, 1059, 1103
BssMI	GATC	6 cut(s)	170, 276, 670, 912, 1055, 1132
Bst2UI	CCWGG	4 cut(s)	205, 611, 932, 1105
Bst4CI	ACNGT	3 cut(s)	632, 639, 743
Bst6I	CTCTTC	2 cut(s)	412, 558
BstAUI	TGTACA	1 cut(s)	1117
BstC8I	GCNNGC	1 cut(s)	838
BstDEI	CTNAG	6 cut(s)	101, 270, 371, 400, 496, 966
BstENI	CCTNNNNNAGG	1 cut(s)	383
BstF5I	GGATG	2 cut(s)	279, 814
BstFNI	CGCG	1 cut(s)	959
BstKTI	GATC	6 cut(s)	173, 279, 673, 915, 1058, 1135
BstMAI	GTCTC	4 cut(s)	9, 25, 369, 403
BstMBI	GATC	6 cut(s)	170, 276, 670, 912, 1055, 1132
BstMWI	GCNNNNNNNGC	1 cut(s)	872
BstNI	CCWGG	4 cut(s)	205, 611, 932, 1105
BstNSI	RCATGY	1 cut(s)	663
BstSCI	CCNGG	5 cut(s)	203, 609, 930, 1058, 1103
BstUI	CGCG	1 cut(s)	959
BstV1I	GCAGC	3 cut(s)	84, 205, 1163
BstV2I	GAAGAC	1 cut(s)	1194
BstX2I	RGATCY	3 cut(s)	670, 912, 1055
BstYI	RGATCY	3 cut(s)	670, 912, 1055
BsuRI	GGCC	3 cut(s)	122, 609, 1065
BtsCI	GGATG	2 cut(s)	279, 814
BtsI	GCAGTG	1 cut(s)	882
BtsIMutI	CAGTG	4 cut(s)	278, 637, 882, 1182
Cac8I	GCNNGC	1 cut(s)	838
CaiI	CAGNNNCTG	1 cut(s)	616
CciI	TCATGA	3 cut(s)	451, 1026, 1212
Cfr13I	GGNCC	2 cut(s)	607, 1063
CseI	GACGC	1 cut(s)	965
Csp6I	GTAC	2 cut(s)	856, 1118
CviQI	GTAC	2 cut(s)	856, 1118
DdeI	CTNAG	6 cut(s)	101, 270, 371, 400, 496, 966
DpnI	GATC	6 cut(s)	172, 278, 672, 914, 1057, 1134
DpnII	GATC	6 cut(s)	170, 276, 670, 912, 1055, 1132
Eam1104I	CTCTTC	2 cut(s)	412, 558
EarI	CTCTTC	2 cut(s)	412, 558
EciI	GGCGGA	1 cut(s)	704
Eco147I	AGGCCT	1 cut(s)	122
Eco24I	GRGCYC	1 cut(s)	271
Eco31I	GGTCTC	1 cut(s)	369
Eco32I	GATATC	1 cut(s)	537
Eco57I	CTGAAG	1 cut(s)	1206
Eco88I	CYCGRG	1 cut(s)	588
EcoNI	CCTNNNNNAGG	1 cut(s)	383
EcoRII	CCWGG	4 cut(s)	203, 609, 930, 1103
EcoRV	GATATC	1 cut(s)	537
EcoT38I	GRGCYC	1 cut(s)	271
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FaqI	GGGAC	1 cut(s)	277
FauNDI	CATATG	3 cut(s)	175, 307, 595
Fnu4HI	GCNGC	5 cut(s)	98, 161, 219, 873, 1177
FokI	GGATG	2 cut(s)	266, 821
FriOI	GRGCYC	1 cut(s)	271
Fsp4HI	GCNGC	5 cut(s)	98, 161, 219, 873, 1177
GluI	GCNGC	5 cut(s)	98, 161, 219, 873, 1177
GsuI	CTGGAG	2 cut(s)	234, 466
HaeIII	GGCC	3 cut(s)	122, 609, 1065
HapII	CCGG	1 cut(s)	1059
HgaI	GACGC	1 cut(s)	965
HincII	GTYRAC	1 cut(s)	963
HindII	GTYRAC	1 cut(s)	963
HinfI	GANTC	4 cut(s)	599, 711, 1169, 1209
HpaI	GTTAAC	1 cut(s)	963
HpaII	CCGG	1 cut(s)	1059
HphI	GGTGA	2 cut(s)	895, 1133
Hpy166II	GTNNAC	4 cut(s)	545, 635, 886, 963
Hpy188I	TCNGA	2 cut(s)	170, 374
Hpy188III	TCNNGA	8 cut(s)	16, 67, 148, 452, 483, 916, 1027, 1213
Hpy8I	GTNNAC	4 cut(s)	545, 635, 886, 963
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	3 cut(s)	632, 639, 743
HpyCH4IV	ACGT	2 cut(s)	54, 435
HpyCH4V	TGCA	7 cut(s)	221, 431, 646, 737, 784, 866, 1179
HpyF10VI	GCNNNNNNNGC	1 cut(s)	872
HpyF3I	CTNAG	6 cut(s)	101, 270, 371, 400, 496, 966
HpySE526I	ACGT	2 cut(s)	54, 435
KspAI	GTTAAC	1 cut(s)	963
Kzo9I	GATC	6 cut(s)	170, 276, 670, 912, 1055, 1132
LmnI	GCTCC	2 cut(s)	82, 215
Lsp1109I	GCAGC	3 cut(s)	84, 205, 1163
MaeII	ACGT	2 cut(s)	54, 435
MaeIII	GTNAC	1 cut(s)	499
MalI	GATC	6 cut(s)	172, 278, 672, 914, 1057, 1134
MboI	GATC	6 cut(s)	170, 276, 670, 912, 1055, 1132
MboII	GAAGA	7 cut(s)	399, 545, 689, 834, 1015, 1052, 1199
MflI	RGATCY	3 cut(s)	670, 912, 1055
MhlI	GDGCHC	2 cut(s)	271, 495
MluCI	AATT	8 cut(s)	10, 20, 192, 247, 447, 825, 861, 1220
MluI	ACGCGT	1 cut(s)	957
MlyI	GAGTC	1 cut(s)	608
MmeI	TCCRAC	2 cut(s)	951, 1070
MseI	TTAA	2 cut(s)	951, 962
MslI	CAYNNNNRTG	1 cut(s)	1197
MspI	CCGG	1 cut(s)	1059
MspR9I	CCNGG	5 cut(s)	205, 611, 932, 1060, 1105
Mva1269I	GAATGC	1 cut(s)	510
MvaI	CCWGG	4 cut(s)	205, 611, 932, 1105
MvnI	CGCG	1 cut(s)	959
MwoI	GCNNNNNNNGC	1 cut(s)	872
NciI	CCSGG	1 cut(s)	1060
NdeI	CATATG	3 cut(s)	175, 307, 595
NdeII	GATC	6 cut(s)	170, 276, 670, 912, 1055, 1132
NlaIV	GGNNCC	4 cut(s)	257, 585, 654, 1064
NspI	RCATGY	1 cut(s)	663
PaeR7I	CTCGAG	1 cut(s)	588
PagI	TCATGA	3 cut(s)	451, 1026, 1212
PceI	AGGCCT	1 cut(s)	122
PctI	GAATGC	1 cut(s)	510
PfeI	GAWTC	3 cut(s)	711, 1169, 1209
PflMI	CCANNNNNTGG	2 cut(s)	616, 1072
PkrI	GCNGC	5 cut(s)	99, 162, 220, 874, 1178
PleI	GAGTC	1 cut(s)	607
PpsI	GAGTC	1 cut(s)	607
Psp6I	CCWGG	4 cut(s)	203, 609, 930, 1103
PspGI	CCWGG	4 cut(s)	203, 609, 930, 1103
PspN4I	GGNNCC	4 cut(s)	257, 585, 654, 1064
PspPI	GGNCC	2 cut(s)	607, 1063
PspXI	VCTCGAGB	1 cut(s)	588
PstNI	CAGNNNCTG	1 cut(s)	616
PsuI	RGATCY	3 cut(s)	670, 912, 1055
RsaI	GTAC	2 cut(s)	857, 1119
RsaNI	GTAC	2 cut(s)	856, 1118
RseI	CAYNNNNRTG	1 cut(s)	1197
SaqAI	TTAA	2 cut(s)	951, 962
SatI	GCNGC	5 cut(s)	98, 161, 219, 873, 1177
Sau3AI	GATC	6 cut(s)	170, 276, 670, 912, 1055, 1132
Sau96I	GGNCC	2 cut(s)	607, 1063
SchI	GAGTC	1 cut(s)	608
ScrFI	CCNGG	5 cut(s)	205, 611, 932, 1060, 1105
SduI	GDGCHC	2 cut(s)	271, 495
Sfr274I	CTCGAG	1 cut(s)	588
SlaI	CTCGAG	1 cut(s)	588
SmiMI	CAYNNNNRTG	1 cut(s)	1197
SmlI	CTYRAG	2 cut(s)	571, 588
SmoI	CTYRAG	2 cut(s)	571, 588
Sse9I	AATT	8 cut(s)	10, 20, 192, 247, 447, 825, 861, 1220
SseBI	AGGCCT	1 cut(s)	122
SsiI	CCGC	3 cut(s)	161, 715, 872
StuI	AGGCCT	1 cut(s)	122
StyD4I	CCNGG	5 cut(s)	203, 609, 930, 1058, 1103
TaaI	ACNGT	3 cut(s)	632, 639, 743
TaiI	ACGT	2 cut(s)	57, 438
TaqI	TCGA	3 cut(s)	533, 589, 1163
TasI	AATT	8 cut(s)	10, 20, 192, 247, 447, 825, 861, 1220
TatI	WGTACW	2 cut(s)	855, 1117
TauI	GCSGC	2 cut(s)	163, 875
TfiI	GAWTC	3 cut(s)	711, 1169, 1209
Tru1I	TTAA	2 cut(s)	951, 962
Tru9I	TTAA	2 cut(s)	951, 962
TscAI	CASTG	4 cut(s)	278, 637, 882, 1189
TseI	GCWGC	3 cut(s)	97, 218, 1176
TspRI	CASTG	4 cut(s)	278, 637, 882, 1189
Van91I	CCANNNNNTGG	2 cut(s)	616, 1072
XagI	CCTNNNNNAGG	1 cut(s)	383
XapI	RAATTY	4 cut(s)	20, 447, 825, 1220
XceI	RCATGY	1 cut(s)	663
XhoI	CTCGAG	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.