Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0014115

Physical Location & Seq

Genomic Coordinates Reverse (-)

6232982 .. 6236475

Gene Structure 3494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g09310.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGGCAAGCTGCGCAATGGAAGGTGGCTGTGCCAGCGACTACTTGGCCGTCGCCATATCCGCCGTCTGCTTCATTCTGCTTGTTTCACGGGTAATCTTGCCCTTTGCCGTTCTCAAAATTCCTCTTCCGAAACGCAGTAGCTTTTGGATTCCAGTGATTCAAATTTATGCCAGCTTAAACCTTCTGTTGTCGCTTGTGATGTCTCTCACTTTTCTGAAATTCAAGAAGACATATTGGTGGCATTCTTGCTATTTTTGGGGAGTCTGGATTGAAGCTCCGCTTGGCTTTGGTTTACTACTGAGCTGCCGCATATCACAGGCCTTCCAACTGTATTACATTTTTGTAAAGAGGTGTCTACCGCCAATCAGATCTTATATATTTCTTCCACTAATTCTCATGCCATGGATTGCTGGGGCTGCTGTTATCCAGATCAAAAGGCCTCTAAATAATCGATGCCACATGGGAATTCAGTGGACCATCCCAGTCATGTCCCTCCACACATTGTATGTTGCCATTTTGGTAGGATTCACGGGGGCTATTTGGCATATAGAGTTCAGGTTTGACGAACTTAGAGACCTCTGGCGGGGAATACTTGTCTCAGCCTTTTCTATTGGAGTATGGGTTGTTGCTTACTTTTTGAATGAAATTCATGAAGATATCTCATATCTTCAAGTTGCCTCAAGATTTGTGCTCTTAGTTATGGCAAGCATTCTTGTCTTAGCTTTCTTTTCGATATCAAGTTCACAACCTCTTCTGTCACAAATCAGCTTGAGGAAAAGGGAGCCCCTATCATTTGAGACAATGGGTCAGGCTCTGGGGATTCCTAACAGTGGAATGCTATTGCCAAGGGAACCAGCACCTGTGATAGATCCAGATGAGCCACTTGATAAACTTCTTATGAACAAAAGATTCCGTGAGTCCTTCATGAAATTTGCAGACAGTTGTTTGGCAGGGGAGAGTGTCCATTTTTATGAGGAAGTGCATGAACTTGGTAAAATACCAGCGGATGATCCTGTAAGAAGGATTTACATGGCAAGGCATATCATTGACAACTACATAATTGCAGGTGCAGCAATGGAAGTTAACATTTCTCACCGAAGCAGACAAGCGATTTTGACTACTTCCAATCTGGCACAACCAAATCTTTTTCATGATGCTTCAAATGAGCTGATACAATTGATGAAAACGAACTTGGCAAAAGATTTCTGGTCATCGATGTACTTCACGAAGTTCAAAGAAGAAGCGAGTACGAGATCTCATGAGCTGAAACAGATGACACGTTGGAACCACTCTCCCACTCCCAGGTTGAGTTCTGCACACGGTGTTGATCGATCCATTTCACCAAGAACAAGAATCATGATTATTGCTGTAACACTCAGCACCGAGGCCTACTGTGAGCAAATTATCATGGAAAGGTATGATAACTGGAAGTTTGATGGATCTCAAGGGTATGCTATTGTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0004930 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005886 GO:0006950 GO:0007154 GO:0007165 GO:0007186 GO:0008047 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009987 GO:0010008 GO:0010033 GO:0010035 GO:0010182 GO:0012505 GO:0016020 GO:0023052 GO:0030234 GO:0030695 GO:0031090 GO:0031410 GO:0031982 GO:0033993 GO:0034284 GO:0038023 GO:0042127 GO:0042221 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051345 GO:0051716 GO:0060089 GO:0060589 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071322 GO:0071944 GO:0097305 GO:0097708 GO:0098588 GO:0098772 GO:0098805 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RGS

Protein Analysis

489

Amino Acids

55.75

Weight (kDa)

8.85

Isoelectric Point (pI)

54.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26090 AT3G26090
fragaria_vesca	FvH4_4g24980
malus_domestica	MD13G1107500.v1.1 MD16G1107500.v1.1
prunus_persica	Prupe.1G238900_v2.0.a1
pyrus_communis	pycom13g09310 pycom16g09160
rosa_chinensis	RchiOBHm_Chr4g0432041
rosa_laevigata	RLG00000006867
rosa_multiflora	Rmu_sc0004965.1_g000023
rosa_roxburghii	Rroxscaffold_5G00373590
rosa_rugosa	Rorug04G0254400
rosa_samantha	Rh4AG311700 Rh4BG318900 Rh4CG334400
rosa_wichuraiana	Rw4G027100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1055
Acc16I	TGCGCA	1 cut(s)	13
Acc36I	ACCTGC	1 cut(s)	1055
AccI	GTMKAC	1 cut(s)	355
AciI	CCGC	6 cut(s)	60, 278, 307, 359, 583, 1004
AclWI	GGATC	4 cut(s)	863, 1004, 1326, 1447
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	6 cut(s)	117, 162, 218, 465, 645, 929
AdeI	CACNNNGTG	1 cut(s)	1322
AfaI	GTAC	2 cut(s)	1220, 1249
AfiI	CCNNNNNNNGG	3 cut(s)	583, 830, 1302
AflIII	ACRYGT	1 cut(s)	1277
AgsI	TTSAA	7 cut(s)	161, 223, 272, 640, 671, 1161, 1234
AhdI	GACNNNNNGTC	1 cut(s)	804
AjnI	CCWGG	1 cut(s)	1301
AjuI	GAANNNNNNNTTGG	4 cut(s)	264, 296, 1175, 1207
AluBI	AGCT	9 cut(s)	9, 141, 174, 275, 303, 722, 768, 1168, 1264
AluI	AGCT	9 cut(s)	9, 141, 174, 275, 303, 722, 768, 1168, 1264
Alw21I	GWGCWC	1 cut(s)	693
Alw26I	GTCTC	4 cut(s)	207, 567, 601, 791
AlwI	GGATC	4 cut(s)	863, 1004, 1326, 1447
AlwNI	CAGNNNCTG	2 cut(s)	814, 860
AoxI	GGCC	4 cut(s)	45, 318, 437, 1386
ApeKI	GCWGC	4 cut(s)	9, 303, 416, 1070
ApoI	RAATTY	6 cut(s)	117, 162, 218, 465, 645, 929
AspLEI	GCGC	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	474
AsuHPI	GGTGA	2 cut(s)	1085, 1332
AvaII	GGWCC	1 cut(s)	474
BanII	GRGCYC	1 cut(s)	786
BbsI	GAAGAC	1 cut(s)	233
Bbv12I	GWGCWC	1 cut(s)	693
BbvI	GCAGC	3 cut(s)	290, 403, 1082
BccI	CCATC	2 cut(s)	485, 1430
BceAI	ACGGC	3 cut(s)	32, 47, 92
BciT130I	CCWGG	1 cut(s)	1303
BcoDI	GTCTC	4 cut(s)	207, 567, 601, 791
BfuAI	ACCTGC	1 cut(s)	1055
BglII	AGATCT	2 cut(s)	368, 1253
BisI	GCNGC	5 cut(s)	10, 304, 307, 417, 1071
BlsI	GCNGC	5 cut(s)	11, 305, 308, 418, 1072
Bme1390I	CCNGG	1 cut(s)	1303
Bme18I	GGWCC	1 cut(s)	474
BmeRI	GACNNNNNGTC	1 cut(s)	804
BmgT120I	GGNCC	1 cut(s)	474
BmiI	GGNNCC	3 cut(s)	783, 852, 1286
BmrFI	CCNGG	1 cut(s)	1303
BmrI	ACTGGG	1 cut(s)	476
BmsI	GCATC	2 cut(s)	443, 1144
BmuI	ACTGGG	1 cut(s)	476
BpiI	GAAGAC	1 cut(s)	233
BpuEI	CTTGAG	3 cut(s)	664, 790, 1428
Bsa29I	ATCGAT	3 cut(s)	451, 1214, 1330
BsaI	GGTCTC	1 cut(s)	567
BsaJI	CCNNGG	4 cut(s)	401, 845, 1301, 1383
BsaXI	ACNNNNNCTCC	2 cut(s)	606, 636
Bsc4I	CCNNNNNNNGG	3 cut(s)	583, 830, 1302
Bse1I	ACTGG	3 cut(s)	152, 482, 1430
Bse3DI	GCAATG	2 cut(s)	21, 1080
BseBI	CCWGG	1 cut(s)	1303
BseCI	ATCGAT	3 cut(s)	451, 1214, 1330
BseDI	CCNNGG	4 cut(s)	401, 845, 1301, 1383
BseGI	GGATG	2 cut(s)	477, 1012
BseLI	CCNNNNNNNGG	3 cut(s)	583, 830, 1302
BseMI	GCAATG	2 cut(s)	21, 1080
BseMII	CTCAG	3 cut(s)	290, 612, 1390
BseNI	ACTGG	3 cut(s)	152, 482, 1430
BseXI	GCAGC	3 cut(s)	290, 403, 1082
BseYI	CCCAGC	1 cut(s)	410
BsgI	GTGCAG	2 cut(s)	1089, 1299
BshFI	GGCC	4 cut(s)	47, 320, 439, 1388
BshVI	ATCGAT	3 cut(s)	451, 1214, 1330
BsiHKAI	GWGCWC	1 cut(s)	693
BslFI	GGGAC	1 cut(s)	475
BslI	CCNNNNNNNGG	3 cut(s)	583, 830, 1302
BsmAI	GTCTC	4 cut(s)	207, 567, 601, 791
BsmFI	GGGAC	1 cut(s)	475
BsmI	GAATGC	3 cut(s)	241, 708, 840
BsnI	GGCC	4 cut(s)	47, 320, 439, 1388
Bso31I	GGTCTC	1 cut(s)	567
Bsp1286I	GDGCHC	2 cut(s)	693, 786
Bsp143I	GATC	8 cut(s)	368, 429, 868, 1009, 1253, 1327, 1331, 1439
Bsp19I	CCATGG	1 cut(s)	401
BspACI	CCGC	6 cut(s)	60, 278, 307, 359, 583, 1004
BspANI	GGCC	4 cut(s)	47, 320, 439, 1388
BspCNI	CTCAG	3 cut(s)	291, 611, 1389
BspDI	ATCGAT	3 cut(s)	451, 1214, 1330
BspHI	TCATGA	5 cut(s)	649, 924, 1150, 1258, 1356
BspLI	GGNNCC	3 cut(s)	783, 852, 1286
BspMI	ACCTGC	1 cut(s)	1055
BspPI	GGATC	4 cut(s)	863, 1004, 1326, 1447
BspTNI	GGTCTC	1 cut(s)	567
BsrDI	GCAATG	2 cut(s)	21, 1080
BsrI	ACTGG	3 cut(s)	152, 482, 1430
BssECI	CCNNGG	4 cut(s)	401, 845, 1301, 1383
BssMI	GATC	8 cut(s)	368, 429, 868, 1009, 1253, 1327, 1331, 1439
BssT1I	CCWWGG	2 cut(s)	401, 845
Bst2UI	CCWGG	1 cut(s)	1303
Bst4CI	ACNGT	5 cut(s)	330, 830, 941, 1322, 1394
Bst6I	CTCTTC	2 cut(s)	129, 756
BstC8I	GCNNGC	4 cut(s)	7, 34, 172, 706
BstDEI	CTNAG	6 cut(s)	299, 569, 598, 694, 718, 1376
BstDSI	CCRYGG	1 cut(s)	401
BstF5I	GGATG	2 cut(s)	477, 1012
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	8 cut(s)	371, 432, 871, 1012, 1256, 1330, 1334, 1442
BstMAI	GTCTC	4 cut(s)	207, 567, 601, 791
BstMBI	GATC	8 cut(s)	368, 429, 868, 1009, 1253, 1327, 1331, 1439
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 33, 59, 416, 1070
BstNI	CCWGG	1 cut(s)	1303
BstSCI	CCNGG	1 cut(s)	1301
BstV1I	GCAGC	3 cut(s)	290, 403, 1082
BstV2I	GAAGAC	1 cut(s)	233
BstX2I	RGATCY	4 cut(s)	368, 868, 1253, 1439
BstYI	RGATCY	4 cut(s)	368, 868, 1253, 1439
Bsu15I	ATCGAT	3 cut(s)	451, 1214, 1330
BsuRI	GGCC	4 cut(s)	47, 320, 439, 1388
BsuTUI	ATCGAT	3 cut(s)	451, 1214, 1330
BtgI	CCRYGG	1 cut(s)	401
BtsCI	GGATG	2 cut(s)	477, 1012
BtsIMutI	CAGTG	3 cut(s)	159, 476, 835
BveI	ACCTGC	1 cut(s)	1055
Cac8I	GCNNGC	4 cut(s)	7, 34, 172, 706
CaiI	CAGNNNCTG	2 cut(s)	814, 860
CciI	TCATGA	5 cut(s)	649, 924, 1150, 1258, 1356
CfoI	GCGC	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	474
ClaI	ATCGAT	3 cut(s)	451, 1214, 1330
Csp6I	GTAC	2 cut(s)	1219, 1248
CviQI	GTAC	2 cut(s)	1219, 1248
DdeI	CTNAG	6 cut(s)	299, 569, 598, 694, 718, 1376
DpnI	GATC	8 cut(s)	370, 431, 870, 1011, 1255, 1329, 1333, 1441
DpnII	GATC	8 cut(s)	368, 429, 868, 1009, 1253, 1327, 1331, 1439
DraIII	CACNNNGTG	1 cut(s)	1322
DriI	GACNNNNNGTC	1 cut(s)	804
EaeI	YGGCCR	1 cut(s)	45
Eam1104I	CTCTTC	2 cut(s)	129, 756
Eam1105I	GACNNNNNGTC	1 cut(s)	804
EarI	CTCTTC	2 cut(s)	129, 756
EciI	GGCGGA	1 cut(s)	49
Eco130I	CCWWGG	2 cut(s)	401, 845
Eco147I	AGGCCT	3 cut(s)	320, 439, 1388
Eco24I	GRGCYC	1 cut(s)	786
Eco31I	GGTCTC	1 cut(s)	567
Eco32I	GATATC	2 cut(s)	658, 735
Eco47I	GGWCC	1 cut(s)	474
EcoRI	GAATTC	1 cut(s)	465
EcoRII	CCWGG	1 cut(s)	1301
EcoRV	GATATC	2 cut(s)	658, 735
EcoT14I	CCWWGG	2 cut(s)	401, 845
EcoT38I	GRGCYC	1 cut(s)	786
ErhI	CCWWGG	2 cut(s)	401, 845
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FaqI	GGGAC	1 cut(s)	475
FauI	CCCGC	1 cut(s)	576
FblI	GTMKAC	1 cut(s)	355
Fnu4HI	GCNGC	5 cut(s)	10, 304, 307, 417, 1071
FokI	GGATG	2 cut(s)	464, 1019
FriOI	GRGCYC	1 cut(s)	786
Fsp4HI	GCNGC	5 cut(s)	10, 304, 307, 417, 1071
FspI	TGCGCA	1 cut(s)	13
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	5 cut(s)	10, 304, 307, 417, 1071
GsaI	CCCAGC	1 cut(s)	414
HaeIII	GGCC	4 cut(s)	47, 320, 439, 1388
HhaI	GCGC	1 cut(s)	14
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HincII	GTYRAC	1 cut(s)	1084
HindII	GTYRAC	1 cut(s)	1084
HinfI	GANTC	8 cut(s)	148, 157, 261, 525, 820, 909, 917, 1353
HpaI	GTTAAC	1 cut(s)	1084
HphI	GGTGA	2 cut(s)	1085, 1332
Hpy166II	GTNNAC	5 cut(s)	293, 356, 474, 743, 1084
Hpy188I	TCNGA	3 cut(s)	129, 216, 368
Hpy8I	GTNNAC	5 cut(s)	293, 356, 474, 743, 1084
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	5 cut(s)	14, 191, 331, 931, 1014
HpyCH4III	ACNGT	5 cut(s)	330, 830, 941, 1322, 1394
HpyCH4IV	ACGT	1 cut(s)	1279
HpyCH4V	TGCA	5 cut(s)	935, 982, 1064, 1070, 1316
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 33, 59, 416, 1070
HpyF3I	CTNAG	6 cut(s)	299, 569, 598, 694, 718, 1376
HpySE526I	ACGT	1 cut(s)	1279
HspAI	GCGC	1 cut(s)	12
KspAI	GTTAAC	1 cut(s)	1084
Kzo9I	GATC	8 cut(s)	368, 429, 868, 1009, 1253, 1327, 1331, 1439
LmnI	GCTCC	2 cut(s)	280, 781
Lsp1109I	GCAGC	3 cut(s)	290, 403, 1082
LweI	GCATC	2 cut(s)	443, 1144
MaeII	ACGT	1 cut(s)	1279
MaeIII	GTNAC	2 cut(s)	756, 1369
MalI	GATC	8 cut(s)	370, 431, 870, 1011, 1255, 1329, 1333, 1441
MboI	GATC	8 cut(s)	368, 429, 868, 1009, 1253, 1327, 1331, 1439
MboII	GAAGA	7 cut(s)	116, 238, 374, 659, 665, 743, 1250
MfeI	CAATTG	1 cut(s)	1175
MflI	RGATCY	4 cut(s)	368, 868, 1253, 1439
MhlI	GDGCHC	2 cut(s)	693, 786
MlyI	GAGTC	2 cut(s)	270, 926
MmeI	TCCRAC	2 cut(s)	349, 1262
MseI	TTAA	2 cut(s)	176, 1083
MslI	CAYNNNNRTG	2 cut(s)	235, 969
MspA1I	CMGCKG	1 cut(s)	1004
MspR9I	CCNGG	1 cut(s)	1303
MunI	CAATTG	1 cut(s)	1175
Mva1269I	GAATGC	3 cut(s)	241, 708, 840
MvaI	CCWGG	1 cut(s)	1303
MwoI	GCNNNNNNNGC	5 cut(s)	11, 33, 59, 416, 1070
NcoI	CCATGG	1 cut(s)	401
NdeII	GATC	8 cut(s)	368, 429, 868, 1009, 1253, 1327, 1331, 1439
NlaIV	GGNNCC	3 cut(s)	783, 852, 1286
NmuCI	GTSAC	1 cut(s)	756
NsbI	TGCGCA	1 cut(s)	13
PagI	TCATGA	5 cut(s)	649, 924, 1150, 1258, 1356
PaqCI	CACCTGC	1 cut(s)	1055
PceI	AGGCCT	3 cut(s)	320, 439, 1388
PctI	GAATGC	3 cut(s)	241, 708, 840
PfeI	GAWTC	6 cut(s)	148, 157, 525, 820, 909, 1353
PkrI	GCNGC	5 cut(s)	11, 305, 308, 418, 1072
PleI	GAGTC	2 cut(s)	269, 925
PpsI	GAGTC	2 cut(s)	269, 925
Psp6I	CCWGG	1 cut(s)	1301
PspFI	CCCAGC	1 cut(s)	410
PspGI	CCWGG	1 cut(s)	1301
PspN4I	GGNNCC	3 cut(s)	783, 852, 1286
PspPI	GGNCC	1 cut(s)	474
PstNI	CAGNNNCTG	2 cut(s)	814, 860
PsuI	RGATCY	4 cut(s)	368, 868, 1253, 1439
RsaI	GTAC	2 cut(s)	1220, 1249
RsaNI	GTAC	2 cut(s)	1219, 1248
RseI	CAYNNNNRTG	2 cut(s)	235, 969
SaqAI	TTAA	2 cut(s)	176, 1083
SatI	GCNGC	5 cut(s)	10, 304, 307, 417, 1071
Sau3AI	GATC	8 cut(s)	368, 429, 868, 1009, 1253, 1327, 1331, 1439
Sau96I	GGNCC	1 cut(s)	474
SchI	GAGTC	2 cut(s)	270, 926
ScrFI	CCNGG	1 cut(s)	1303
SduI	GDGCHC	2 cut(s)	693, 786
SfaNI	GCATC	2 cut(s)	443, 1144
SinI	GGWCC	1 cut(s)	474
SmiMI	CAYNNNNRTG	2 cut(s)	235, 969
SmlI	CTYRAG	3 cut(s)	679, 769, 1443
SmoI	CTYRAG	3 cut(s)	679, 769, 1443
SseBI	AGGCCT	3 cut(s)	320, 439, 1388
SsiI	CCGC	6 cut(s)	60, 278, 307, 359, 583, 1004
StuI	AGGCCT	3 cut(s)	320, 439, 1388
StyD4I	CCNGG	1 cut(s)	1301
StyI	CCWWGG	2 cut(s)	401, 845
TaaI	ACNGT	5 cut(s)	330, 830, 941, 1322, 1394
TaiI	ACGT	1 cut(s)	1282
TaqI	TCGA	4 cut(s)	451, 731, 1214, 1330
TatI	WGTACW	1 cut(s)	1218
TauI	GCSGC	1 cut(s)	309
TfiI	GAWTC	6 cut(s)	148, 157, 525, 820, 909, 1353
Tru1I	TTAA	2 cut(s)	176, 1083
Tru9I	TTAA	2 cut(s)	176, 1083
TscAI	CASTG	3 cut(s)	159, 476, 835
TseFI	GTSAC	1 cut(s)	756
TseI	GCWGC	4 cut(s)	9, 303, 416, 1070
Tsp45I	GTSAC	1 cut(s)	756
TspGWI	ACGGA	1 cut(s)	902
TspRI	CASTG	3 cut(s)	159, 476, 835
VpaK11BI	GGWCC	1 cut(s)	474
XapI	RAATTY	6 cut(s)	117, 162, 218, 465, 645, 929
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.