Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0014115

Physical Location & Seq

Genomic Coordinates Reverse (-)

6144779 .. 6148486

Gene Structure 3708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g09160.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGGCAAGCTGCGCAGTGGAAGGTGGCTGTGCCTGCGACTACTTAGCCGTCGCCATATCCGCCGTCTGTTTCATTCTGCTTCTTTCACGGGCAATCTTACCCTTTGCCGTTCACAAAATTCCTCTTCCGAAACGCAGTAGCTTTTGGATTCCAGTGATTCAAATTTACGCCAGCTTCAACCTTTTGTTGTCGCTTGTGATGTCTCTCAATTTTCTGAAATTCGAGAAGACATATTGGTGGCAGTCTTGCTATCTTTGGGCAGTCTGGATTGGAGCTCCTCTTGGCTTTGGTTTACTACTTAGCTGCCGCATATCACAGGCCTTTCAACTGTATTACATTTTTGTAAAGAGGTGTCTACCACCAATCAGATCTTATATTTTTCTTCCACTAATTCTCTTGCCATGGATTGCTTGGGCTGCTTTGATCCACATCAAAGAGCCTCTAAATCATCGATGTCACATGGGAGCTCAGTGGATCATCCCAGACATGTCCCTCCACGCACTATATGTTGCCATTTTGGTAGGATTCACAGGGGCTATTCGGCATATAGAGTTCAGGTTTGACGAACTTAGAGACCTCTGGCAGGGAATACTTGTCTCAGCCTCTTCAATTGGAGTATGGGTTGTTGCTTACATTTTGAATGAAATTCATGATGATATCTCGGGGCTTCAAGTTGCCTCTAGATTTGTTCTCTTAGTTACGGCAAGCATTCTTGTGTTAGCTTTATTTTCGATATCAAGTTCACAACCTCTTCTATCACAAATCAGCTTGAGGAAAAGGGAGCCCCTATCATTTGAGACAATGGGTAAGGCTCTGGGCATACCTAACAGTGGAATGCTATTGCCAAGGGAACCAGCACCTGTGGTGGATCCTAATGAACCACTTGATAAACTTCTTATGAACAAAATATTCCGTCAGTCCTTCATGGAATTTGCAAACAGTTGTTTGGCAGGGGAGAGTGTCCATTTTTATGAGGAAGTGCATGAACTTGGTAAAATACCAGCGGATGATCCTGTAAGAAGGATTTACATGGCACGGCATATCATTGACAAATACATAATTGCAGGTGCAGCAATGGAGGTGAACATTTCTCACCGAAGCAGACAAGCAATTTTGACTACTTCCAATCTGGCACAACCAAATCTTTTTAACGATGCTTTAAATGAGCTGATACAGCTGATGAAAACGAACTTGGCAAAAGATTTCTGGTCATCTATATACTCCATGAAGTTCAAAGAAGAAGCCAGTATGAGATCTCATGAGCTGGAACAGATGACAAGTTGGAACCCCTCTCCCACGCCTAGGTTGAGTTCTGTACATGGCGTTGATGATCCATTTCACCAAGAACAAGAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0004930 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005886 GO:0006950 GO:0007154 GO:0007165 GO:0007186 GO:0008047 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009987 GO:0010008 GO:0010033 GO:0010035 GO:0010182 GO:0012505 GO:0016020 GO:0023052 GO:0030234 GO:0030695 GO:0031090 GO:0031410 GO:0031982 GO:0033993 GO:0034284 GO:0038023 GO:0042127 GO:0042221 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051345 GO:0051716 GO:0060089 GO:0060589 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071322 GO:0071944 GO:0097305 GO:0097708 GO:0098588 GO:0098772 GO:0098805 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RGS

Protein Analysis

453

Amino Acids

51.18

Weight (kDa)

6.92

Isoelectric Point (pI)

56.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26090 AT3G26090
fragaria_vesca	FvH4_4g24980
malus_domestica	MD13G1107500.v1.1 MD16G1107500.v1.1
prunus_persica	Prupe.1G238900_v2.0.a1
pyrus_communis	pycom13g09310 pycom16g09160
rosa_chinensis	RchiOBHm_Chr4g0432041
rosa_laevigata	RLG00000006867
rosa_multiflora	Rmu_sc0004965.1_g000023
rosa_roxburghii	Rroxscaffold_5G00373590
rosa_rugosa	Rorug04G0254400
rosa_samantha	Rh4AG311700 Rh4BG318900 Rh4CG334400
rosa_wichuraiana	Rw4G027100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1055
Acc16I	TGCGCA	1 cut(s)	13
Acc36I	ACCTGC	1 cut(s)	1055
AccI	GTMKAC	1 cut(s)	355
AciI	CCGC	3 cut(s)	60, 307, 1004
AclWI	GGATC	6 cut(s)	418, 482, 863, 876, 1004, 1325
AcsI	RAATTY	5 cut(s)	117, 162, 218, 645, 929
AfaI	GTAC	1 cut(s)	1317
AfiI	CCNNNNNNNGG	3 cut(s)	583, 830, 1302
AflIII	ACRYGT	1 cut(s)	486
AgsI	TTSAA	7 cut(s)	161, 178, 326, 609, 640, 671, 1234
AjuI	GAANNNNNNNTTGG	2 cut(s)	1175, 1207
Alw21I	GWGCWC	2 cut(s)	277, 469
Alw26I	GTCTC	4 cut(s)	207, 567, 601, 791
AlwI	GGATC	6 cut(s)	418, 482, 863, 876, 1004, 1325
AlwNI	CAGNNNCTG	1 cut(s)	860
Ama87I	CYCGRG	1 cut(s)	661
AoxI	GGCC	1 cut(s)	318
ApeKI	GCWGC	4 cut(s)	9, 303, 416, 1070
ApoI	RAATTY	5 cut(s)	117, 162, 218, 645, 929
AspA2I	CCTAGG	1 cut(s)	1301
AspLEI	GCGC	1 cut(s)	14
AsuHPI	GGTGA	3 cut(s)	1085, 1093, 1331
AvaI	CYCGRG	1 cut(s)	661
AvrII	CCTAGG	1 cut(s)	1301
BamHI	GGATCC	1 cut(s)	868
BanII	GRGCYC	3 cut(s)	277, 469, 786
BbsI	GAAGAC	1 cut(s)	233
Bbv12I	GWGCWC	2 cut(s)	277, 469
BbvI	GCAGC	3 cut(s)	290, 403, 1082
BceAI	ACGGC	5 cut(s)	32, 47, 92, 717, 1052
BcoDI	GTCTC	4 cut(s)	207, 567, 601, 791
BfaI	CTAG	2 cut(s)	681, 1302
BfuAI	ACCTGC	1 cut(s)	1055
BglII	AGATCT	2 cut(s)	368, 1253
BisI	GCNGC	5 cut(s)	10, 304, 307, 417, 1071
BlnI	CCTAGG	1 cut(s)	1301
BlsI	GCNGC	5 cut(s)	11, 305, 308, 418, 1072
BmeT110I	CYCGRG	1 cut(s)	661
BmiI	GGNNCC	4 cut(s)	783, 852, 870, 1286
BmsI	GCATC	1 cut(s)	1144
BpiI	GAAGAC	1 cut(s)	233
BpuEI	CTTGAG	1 cut(s)	790
Bsa29I	ATCGAT	1 cut(s)	451
BsaBI	GATNNNNATC	1 cut(s)	428
BsaI	GGTCTC	1 cut(s)	567
BsaJI	CCNNGG	3 cut(s)	401, 845, 1301
BsaXI	ACNNNNNCTCC	2 cut(s)	606, 636
Bsc4I	CCNNNNNNNGG	3 cut(s)	583, 830, 1302
Bse1I	ACTGG	2 cut(s)	152, 1245
Bse3DI	GCAATG	1 cut(s)	1080
Bse8I	GATNNNNATC	1 cut(s)	428
BseCI	ATCGAT	1 cut(s)	451
BseDI	CCNNGG	3 cut(s)	401, 845, 1301
BseGI	GGATG	2 cut(s)	477, 1012
BseJI	GATNNNNATC	1 cut(s)	428
BseLI	CCNNNNNNNGG	3 cut(s)	583, 830, 1302
BseMI	GCAATG	1 cut(s)	1080
BseMII	CTCAG	2 cut(s)	482, 612
BseNI	ACTGG	2 cut(s)	152, 1245
BseRI	GAGGAG	1 cut(s)	267
BseXI	GCAGC	3 cut(s)	290, 403, 1082
BsgI	GTGCAG	1 cut(s)	1089
BshFI	GGCC	1 cut(s)	320
BshVI	ATCGAT	1 cut(s)	451
BsiHKAI	GWGCWC	2 cut(s)	277, 469
BsiHKCI	CYCGRG	1 cut(s)	661
BslFI	GGGAC	1 cut(s)	475
BslI	CCNNNNNNNGG	3 cut(s)	583, 830, 1302
BsmAI	GTCTC	4 cut(s)	207, 567, 601, 791
BsmFI	GGGAC	1 cut(s)	475
BsmI	GAATGC	2 cut(s)	708, 840
BsnI	GGCC	1 cut(s)	320
Bso31I	GGTCTC	1 cut(s)	567
BsoBI	CYCGRG	1 cut(s)	661
Bsp1286I	GDGCHC	3 cut(s)	277, 469, 786
Bsp1407I	TGTACA	1 cut(s)	1315
Bsp143I	GATC	7 cut(s)	368, 423, 474, 868, 1009, 1253, 1330
Bsp19I	CCATGG	1 cut(s)	401
BspACI	CCGC	3 cut(s)	60, 307, 1004
BspANI	GGCC	1 cut(s)	320
BspCNI	CTCAG	2 cut(s)	481, 611
BspDI	ATCGAT	1 cut(s)	451
BspHI	TCATGA	3 cut(s)	649, 1258, 1355
BspLI	GGNNCC	4 cut(s)	783, 852, 870, 1286
BspMI	ACCTGC	1 cut(s)	1055
BspPI	GGATC	6 cut(s)	418, 482, 863, 876, 1004, 1325
BspTNI	GGTCTC	1 cut(s)	567
BsrDI	GCAATG	1 cut(s)	1080
BsrGI	TGTACA	1 cut(s)	1315
BsrI	ACTGG	2 cut(s)	152, 1245
BssECI	CCNNGG	3 cut(s)	401, 845, 1301
BssMI	GATC	7 cut(s)	368, 423, 474, 868, 1009, 1253, 1330
BssT1I	CCWWGG	3 cut(s)	401, 845, 1301
Bst4CI	ACNGT	3 cut(s)	330, 830, 941
Bst6I	CTCTTC	3 cut(s)	129, 610, 756
BstAUI	TGTACA	1 cut(s)	1315
BstC8I	GCNNGC	4 cut(s)	7, 34, 172, 706
BstDEI	CTNAG	6 cut(s)	43, 299, 468, 569, 598, 694
BstDSI	CCRYGG	1 cut(s)	401
BstENI	CCTNNNNNAGG	1 cut(s)	581
BstF5I	GGATG	2 cut(s)	477, 1012
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	7 cut(s)	371, 426, 477, 871, 1012, 1256, 1333
BstMAI	GTCTC	4 cut(s)	207, 567, 601, 791
BstMBI	GATC	7 cut(s)	368, 423, 474, 868, 1009, 1253, 1330
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 33, 59, 416, 1070, 1174
BstNSI	RCATGY	1 cut(s)	490
BstV1I	GCAGC	3 cut(s)	290, 403, 1082
BstV2I	GAAGAC	1 cut(s)	233
BstX2I	RGATCY	3 cut(s)	368, 868, 1253
BstYI	RGATCY	3 cut(s)	368, 868, 1253
Bsu15I	ATCGAT	1 cut(s)	451
BsuRI	GGCC	1 cut(s)	320
BsuTUI	ATCGAT	1 cut(s)	451
BtgI	CCRYGG	1 cut(s)	401
BtsCI	GGATG	2 cut(s)	477, 1012
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	4 cut(s)	21, 159, 476, 835
BveI	ACCTGC	1 cut(s)	1055
Cac8I	GCNNGC	4 cut(s)	7, 34, 172, 706
CaiI	CAGNNNCTG	1 cut(s)	860
CciI	TCATGA	3 cut(s)	649, 1258, 1355
CfoI	GCGC	1 cut(s)	14
ClaI	ATCGAT	1 cut(s)	451
Csp6I	GTAC	1 cut(s)	1316
CviQI	GTAC	1 cut(s)	1316
DdeI	CTNAG	6 cut(s)	43, 299, 468, 569, 598, 694
DpnI	GATC	7 cut(s)	370, 425, 476, 870, 1011, 1255, 1332
DpnII	GATC	7 cut(s)	368, 423, 474, 868, 1009, 1253, 1330
DraI	TTTAAA	1 cut(s)	1161
Eam1104I	CTCTTC	3 cut(s)	129, 610, 756
EarI	CTCTTC	3 cut(s)	129, 610, 756
EciI	GGCGGA	1 cut(s)	49
Ecl136II	GAGCTC	2 cut(s)	275, 467
Eco130I	CCWWGG	3 cut(s)	401, 845, 1301
Eco147I	AGGCCT	1 cut(s)	320
Eco24I	GRGCYC	3 cut(s)	277, 469, 786
Eco31I	GGTCTC	1 cut(s)	567
Eco32I	GATATC	2 cut(s)	658, 735
Eco53kI	GAGCTC	2 cut(s)	275, 467
Eco88I	CYCGRG	1 cut(s)	661
EcoICRI	GAGCTC	2 cut(s)	275, 467
EcoNI	CCTNNNNNAGG	1 cut(s)	581
EcoRV	GATATC	2 cut(s)	658, 735
EcoT14I	CCWWGG	3 cut(s)	401, 845, 1301
EcoT38I	GRGCYC	3 cut(s)	277, 469, 786
ErhI	CCWWGG	3 cut(s)	401, 845, 1301
FaqI	GGGAC	1 cut(s)	475
FblI	GTMKAC	1 cut(s)	355
Fnu4HI	GCNGC	5 cut(s)	10, 304, 307, 417, 1071
FokI	GGATG	2 cut(s)	464, 1019
FriOI	GRGCYC	3 cut(s)	277, 469, 786
Fsp4HI	GCNGC	5 cut(s)	10, 304, 307, 417, 1071
FspBI	CTAG	2 cut(s)	681, 1302
FspI	TGCGCA	1 cut(s)	13
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	5 cut(s)	10, 304, 307, 417, 1071
HaeIII	GGCC	1 cut(s)	320
HhaI	GCGC	1 cut(s)	14
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HinfI	GANTC	4 cut(s)	148, 157, 525, 1352
HphI	GGTGA	3 cut(s)	1085, 1093, 1331
Hpy166II	GTNNAC	5 cut(s)	112, 293, 356, 743, 1084
Hpy188I	TCNGA	3 cut(s)	129, 216, 368
Hpy188III	TCNNGA	6 cut(s)	223, 265, 650, 681, 1259, 1356
Hpy8I	GTNNAC	5 cut(s)	112, 293, 356, 743, 1084
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	3 cut(s)	14, 931, 1014
HpyCH4III	ACNGT	3 cut(s)	330, 830, 941
HpyCH4V	TGCA	4 cut(s)	935, 982, 1064, 1070
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 33, 59, 416, 1070, 1174
HpyF3I	CTNAG	6 cut(s)	43, 299, 468, 569, 598, 694
HspAI	GCGC	1 cut(s)	12
Kzo9I	GATC	7 cut(s)	368, 423, 474, 868, 1009, 1253, 1330
LmnI	GCTCC	4 cut(s)	272, 280, 464, 781
Lsp1109I	GCAGC	3 cut(s)	290, 403, 1082
LweI	GCATC	1 cut(s)	1144
MaeI	CTAG	2 cut(s)	681, 1302
MaeIII	GTNAC	2 cut(s)	455, 697
MalI	GATC	7 cut(s)	370, 425, 476, 870, 1011, 1255, 1332
MboI	GATC	7 cut(s)	368, 423, 474, 868, 1009, 1253, 1330
MboII	GAAGA	6 cut(s)	116, 238, 374, 597, 743, 1250
MfeI	CAATTG	1 cut(s)	609
MflI	RGATCY	3 cut(s)	368, 868, 1253
MhlI	GDGCHC	3 cut(s)	277, 469, 786
MmeI	TCCRAC	1 cut(s)	1262
MseI	TTAA	2 cut(s)	1149, 1160
MslI	CAYNNNNRTG	3 cut(s)	235, 713, 969
MspA1I	CMGCKG	2 cut(s)	1004, 1177
MunI	CAATTG	1 cut(s)	609
Mva1269I	GAATGC	2 cut(s)	708, 840
MwoI	GCNNNNNNNGC	6 cut(s)	11, 33, 59, 416, 1070, 1174
NcoI	CCATGG	1 cut(s)	401
NdeII	GATC	7 cut(s)	368, 423, 474, 868, 1009, 1253, 1330
NlaIV	GGNNCC	4 cut(s)	783, 852, 870, 1286
NmuCI	GTSAC	1 cut(s)	455
NsbI	TGCGCA	1 cut(s)	13
NspI	RCATGY	1 cut(s)	490
PagI	TCATGA	3 cut(s)	649, 1258, 1355
PaqCI	CACCTGC	1 cut(s)	1055
PceI	AGGCCT	1 cut(s)	320
PciI	ACATGT	1 cut(s)	486
PctI	GAATGC	2 cut(s)	708, 840
PfeI	GAWTC	4 cut(s)	148, 157, 525, 1352
PkrI	GCNGC	5 cut(s)	11, 305, 308, 418, 1072
PscI	ACATGT	1 cut(s)	486
Psp124BI	GAGCTC	2 cut(s)	277, 469
PspN4I	GGNNCC	4 cut(s)	783, 852, 870, 1286
PstNI	CAGNNNCTG	1 cut(s)	860
PsuI	RGATCY	3 cut(s)	368, 868, 1253
PvuII	CAGCTG	1 cut(s)	1177
RsaI	GTAC	1 cut(s)	1317
RsaNI	GTAC	1 cut(s)	1316
RseI	CAYNNNNRTG	3 cut(s)	235, 713, 969
SacI	GAGCTC	2 cut(s)	277, 469
SaqAI	TTAA	2 cut(s)	1149, 1160
SatI	GCNGC	5 cut(s)	10, 304, 307, 417, 1071
Sau3AI	GATC	7 cut(s)	368, 423, 474, 868, 1009, 1253, 1330
SduI	GDGCHC	3 cut(s)	277, 469, 786
SfaNI	GCATC	1 cut(s)	1144
SmiMI	CAYNNNNRTG	3 cut(s)	235, 713, 969
SmlI	CTYRAG	1 cut(s)	769
SmoI	CTYRAG	1 cut(s)	769
SseBI	AGGCCT	1 cut(s)	320
SsiI	CCGC	3 cut(s)	60, 307, 1004
SspI	AATATT	1 cut(s)	909
SspMI	CTAG	2 cut(s)	681, 1302
SstI	GAGCTC	2 cut(s)	277, 469
StuI	AGGCCT	1 cut(s)	320
StyI	CCWWGG	3 cut(s)	401, 845, 1301
TaaI	ACNGT	3 cut(s)	330, 830, 941
TaqI	TCGA	3 cut(s)	222, 451, 731
TatI	WGTACW	1 cut(s)	1315
TauI	GCSGC	1 cut(s)	309
TfiI	GAWTC	4 cut(s)	148, 157, 525, 1352
Tru1I	TTAA	2 cut(s)	1149, 1160
Tru9I	TTAA	2 cut(s)	1149, 1160
TscAI	CASTG	4 cut(s)	21, 159, 476, 835
TseFI	GTSAC	1 cut(s)	455
TseI	GCWGC	4 cut(s)	9, 303, 416, 1070
Tsp45I	GTSAC	1 cut(s)	455
TspDTI	ATGAA	9 cut(s)	61, 638, 657, 891, 913, 914, 999, 1196, 1241
TspGWI	ACGGA	1 cut(s)	902
TspRI	CASTG	4 cut(s)	21, 159, 476, 835
XagI	CCTNNNNNAGG	1 cut(s)	581
XapI	RAATTY	5 cut(s)	117, 162, 218, 645, 929
XbaI	TCTAGA	1 cut(s)	680
XceI	RCATGY	1 cut(s)	490
XcmI	CCANNNNNNNNNTGG	1 cut(s)	408
XmaJI	CCTAGG	1 cut(s)	1301
XmiI	GTMKAC	1 cut(s)	355
XspI	CTAG	2 cut(s)	681, 1302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.