Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014115

Physical Location & Seq

Genomic Coordinates Forward (+)

25342619 .. 25345892

Gene Structure 3274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G238900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGGCAAGCTGTGCAGTGTATGGTGGCTGTGCCAGCGACTACATAGCCATCGCTATATCTGCCGTCTTTTTCATTTTGCTTCTTTCGCGGTTAATCTTGCCCTTTGCCATTCACAAGATTCCTCTACCGAAACGCAGTAGCTTTTGGATTCCAGTTATTCAAATTTTTGCCAGCTTCAACCTTCTGTTGTCAATTGTGATGTCTGTCAATTTTCTGAAATTCGAAAAGAGACATTGGTGGCAGTCTTGCTATGCGTGGGCAGTCTGGATTGAAGCTCCACTTGGCTTTGGTTTATTACTGAGCTGTCGCATATCACAGGCCTTCCAGCTGTATTACATTTTTGTCAAGAGGTGTCTACCACCAATCAGATCTTATATTTTCCTTCCACTAATTCTCTTGCCATGGATTGCGGGGGCTGCACTTATGCATATCAAGAAGCCTCTAAATTATCGATGCCACATGGGGACTCAGTGGATCATCCCAGTTGTGTCCCTTCACGCAATCTATGTTGCCATTTTGGTTGGGTTCACGGGGGCTGTTCGGCATATAGAGTTCAGGTTTGATGAACTTAGAGACCTCTGGCAGGGAATACTTGTCTCAGCCTCTTCTATTGGAGTATGGGTTGCTGCTTACATTTTGAATGAAATTCATGATGATATCTCATGGCTTCAAGTTGTCTCTAGATTTACGCTCTTAGTTACGGCAAGCATTCTTGTATTATCTTTCTTTTCGATATCAAGTTCACAACCTCTTCTATCGCAAATCAGCTTGAGGAAAAGGGAACCCCTAGCATTTGAGACAATGGGTCAGGCTCTGGGTATACCTAACAGTGGACTACTATTACCAAGGGAACCAGCACCAGTGATAGACCCTAATGAGCCACTTGATAAACTGCTTATGAACAAAAGATTCCGTCAGTCCTTCATGTCCTTTGCAGACAGTTGTTTGGCAGGGGAGAGTGTGCATTTTTACGAGGAAGTGCATGAACTTGGTAAGATACCAGTGGATGACCCTGTAAGAAGGATTTACATGGCACGACATATCATCGACAAGTACATAACTGCAGGTGCAACAATGGAGGTGAACATTTCTCACCGAAGCAGGCAAGCGATTTTGACTACTTCCAATCTGGCACAGCCAAATCTGTTCAATGATGCATTGAATGAGCTGATACAGTTGATGAAAATGAACTTGGCAAACGATTACTGGTCATCCACTTACTTCATGAAGTTCAAAGAAGAAGCCAGTTTGAGATCGCATGAGCTACAACAGATGACAAGTTGGAACTCTCCCACTCCCAGGTTGAGTTCTGTACGTGGTGTCGATGATCCATTTCACCAAGAACAAGAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0004930 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005886 GO:0006950 GO:0007154 GO:0007165 GO:0007186 GO:0008047 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009987 GO:0010008 GO:0010033 GO:0010035 GO:0010182 GO:0012505 GO:0016020 GO:0023052 GO:0030234 GO:0030695 GO:0031090 GO:0031410 GO:0031982 GO:0033993 GO:0034284 GO:0038023 GO:0042127 GO:0042221 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051345 GO:0051716 GO:0060089 GO:0060589 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071322 GO:0071944 GO:0097305 GO:0097708 GO:0098588 GO:0098772 GO:0098805 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RGS

Protein Analysis

452

Amino Acids

51.42

Weight (kDa)

8.59

Isoelectric Point (pI)

61.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26090 AT3G26090
fragaria_vesca	FvH4_4g24980
malus_domestica	MD13G1107500.v1.1 MD16G1107500.v1.1
prunus_persica	Prupe.1G238900_v2.0.a1
pyrus_communis	pycom13g09310 pycom16g09160
rosa_chinensis	RchiOBHm_Chr4g0432041
rosa_laevigata	RLG00000006867
rosa_multiflora	Rmu_sc0004965.1_g000023
rosa_roxburghii	Rroxscaffold_5G00373590
rosa_rugosa	Rorug04G0254400
rosa_samantha	Rh4AG311700 Rh4BG318900 Rh4CG334400
rosa_wichuraiana	Rw4G027100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1055
Acc36I	ACCTGC	1 cut(s)	1055
AccI	GTMKAC	2 cut(s)	355, 820
AccII	CGCG	1 cut(s)	88
AciI	CCGC	2 cut(s)	88, 410
AclWI	GGATC	2 cut(s)	482, 1322
AcsI	RAATTY	3 cut(s)	162, 218, 645
AfaI	GTAC	2 cut(s)	1055, 1314
AfiI	CCNNNNNNNGG	3 cut(s)	583, 830, 1299
AgsI	TTSAA	8 cut(s)	161, 178, 272, 640, 671, 1150, 1162, 1234
AhdI	GACNNNNNGTC	1 cut(s)	804
AjnI	CCWGG	1 cut(s)	1298
AjuI	GAANNNNNNNTTGG	4 cut(s)	264, 296, 1175, 1207
AluBI	AGCT	9 cut(s)	9, 141, 174, 275, 303, 328, 768, 1168, 1264
AluI	AGCT	9 cut(s)	9, 141, 174, 275, 303, 328, 768, 1168, 1264
Alw26I	GTCTC	5 cut(s)	223, 567, 601, 682, 791
AlwI	GGATC	2 cut(s)	482, 1322
AlwNI	CAGNNNCTG	1 cut(s)	814
AoxI	GGCC	1 cut(s)	318
ApeKI	GCWGC	2 cut(s)	416, 626
ApoI	RAATTY	3 cut(s)	162, 218, 645
AsuHPI	GGTGA	3 cut(s)	1085, 1093, 1328
AsuII	TTCGAA	1 cut(s)	222
BbvI	GCAGC	2 cut(s)	403, 613
BccI	CCATC	1 cut(s)	56
BceAI	ACGGC	2 cut(s)	47, 717
BciT130I	CCWGG	1 cut(s)	1300
BcoDI	GTCTC	5 cut(s)	223, 567, 601, 682, 791
BfaI	CTAG	2 cut(s)	681, 788
BfmI	CTRYAG	1 cut(s)	1062
BfuAI	ACCTGC	1 cut(s)	1055
BglII	AGATCT	1 cut(s)	368
BisI	GCNGC	2 cut(s)	417, 627
BlsI	GCNGC	2 cut(s)	418, 628
Bme1390I	CCNGG	1 cut(s)	1300
BmeRI	GACNNNNNGTC	1 cut(s)	804
BmiI	GGNNCC	2 cut(s)	783, 852
BmrFI	CCNGG	1 cut(s)	1300
BmrI	ACTGGG	1 cut(s)	476
BmsI	GCATC	2 cut(s)	443, 1144
BmuI	ACTGGG	1 cut(s)	476
Bpu14I	TTCGAA	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	790
Bsa29I	ATCGAT	1 cut(s)	451
BsaAI	YACGTR	1 cut(s)	1316
BsaI	GGTCTC	1 cut(s)	567
BsaJI	CCNNGG	3 cut(s)	401, 845, 1298
BsaXI	ACNNNNNCTCC	2 cut(s)	606, 636
Bsc4I	CCNNNNNNNGG	3 cut(s)	583, 830, 1299
Bse1I	ACTGG	6 cut(s)	152, 482, 860, 1001, 1211, 1245
BseBI	CCWGG	1 cut(s)	1300
BseCI	ATCGAT	1 cut(s)	451
BseDI	CCNNGG	3 cut(s)	401, 845, 1298
BseGI	GGATG	3 cut(s)	477, 1012, 1211
BseLI	CCNNNNNNNGG	3 cut(s)	583, 830, 1299
BseMII	CTCAG	3 cut(s)	290, 482, 612
BseNI	ACTGG	6 cut(s)	152, 482, 860, 1001, 1211, 1245
BseXI	GCAGC	2 cut(s)	403, 613
BsgI	GTGCAG	2 cut(s)	33, 402
Bsh1236I	CGCG	1 cut(s)	88
BshFI	GGCC	1 cut(s)	320
BshVI	ATCGAT	1 cut(s)	451
BslFI	GGGAC	2 cut(s)	475, 478
BslI	CCNNNNNNNGG	3 cut(s)	583, 830, 1299
BsmAI	GTCTC	5 cut(s)	223, 567, 601, 682, 791
BsmFI	GGGAC	2 cut(s)	475, 478
BsmI	GAATGC	1 cut(s)	708
BsnI	GGCC	1 cut(s)	320
Bso31I	GGTCTC	1 cut(s)	567
Bsp119I	TTCGAA	1 cut(s)	222
Bsp143I	GATC	4 cut(s)	368, 474, 1253, 1327
Bsp19I	CCATGG	1 cut(s)	401
BspACI	CCGC	2 cut(s)	88, 410
BspANI	GGCC	1 cut(s)	320
BspCNI	CTCAG	3 cut(s)	291, 481, 611
BspDI	ATCGAT	1 cut(s)	451
BspFNI	CGCG	1 cut(s)	88
BspHI	TCATGA	2 cut(s)	649, 1224
BspLI	GGNNCC	2 cut(s)	783, 852
BspMAI	CTGCAG	1 cut(s)	1066
BspMI	ACCTGC	1 cut(s)	1055
BspPI	GGATC	2 cut(s)	482, 1322
BspT104I	TTCGAA	1 cut(s)	222
BspTNI	GGTCTC	1 cut(s)	567
BsrI	ACTGG	6 cut(s)	152, 482, 860, 1001, 1211, 1245
BssECI	CCNNGG	3 cut(s)	401, 845, 1298
BssMI	GATC	4 cut(s)	368, 474, 1253, 1327
BssNAI	GTATAC	1 cut(s)	821
BssT1I	CCWWGG	2 cut(s)	401, 845
Bst1107I	GTATAC	1 cut(s)	821
Bst2UI	CCWGG	1 cut(s)	1300
Bst4CI	ACNGT	3 cut(s)	830, 941, 1176
Bst6I	CTCTTC	2 cut(s)	610, 756
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstBAI	YACGTR	1 cut(s)	1316
BstBI	TTCGAA	1 cut(s)	222
BstC8I	GCNNGC	6 cut(s)	7, 34, 172, 706, 1103, 1107
BstDEI	CTNAG	5 cut(s)	299, 468, 569, 598, 694
BstDSI	CCRYGG	1 cut(s)	401
BstENI	CCTNNNNNAGG	1 cut(s)	581
BstF5I	GGATG	3 cut(s)	477, 1012, 1211
BstFNI	CGCG	1 cut(s)	88
BstKTI	GATC	4 cut(s)	371, 477, 1256, 1330
BstMAI	GTCTC	5 cut(s)	223, 567, 601, 682, 791
BstMBI	GATC	4 cut(s)	368, 474, 1253, 1327
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 33, 59, 85, 416
BstNI	CCWGG	1 cut(s)	1300
BstSCI	CCNGG	1 cut(s)	1298
BstSFI	CTRYAG	1 cut(s)	1062
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	2 cut(s)	403, 613
BstX2I	RGATCY	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	368
BstZ17I	GTATAC	1 cut(s)	821
Bsu15I	ATCGAT	1 cut(s)	451
BsuRI	GGCC	1 cut(s)	320
BsuTUI	ATCGAT	1 cut(s)	451
BtgI	CCRYGG	1 cut(s)	401
BtgZI	GCGATG	1 cut(s)	34
BtsCI	GGATG	3 cut(s)	477, 1012, 1211
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	5 cut(s)	21, 476, 835, 867, 1008
BveI	ACCTGC	1 cut(s)	1055
Cac8I	GCNNGC	6 cut(s)	7, 34, 172, 706, 1103, 1107
CaiI	CAGNNNCTG	1 cut(s)	814
CciI	TCATGA	2 cut(s)	649, 1224
ClaI	ATCGAT	1 cut(s)	451
Csp6I	GTAC	2 cut(s)	1054, 1313
CviQI	GTAC	2 cut(s)	1054, 1313
DdeI	CTNAG	5 cut(s)	299, 468, 569, 598, 694
DpnI	GATC	4 cut(s)	370, 476, 1255, 1329
DpnII	GATC	4 cut(s)	368, 474, 1253, 1327
DriI	GACNNNNNGTC	1 cut(s)	804
Eam1104I	CTCTTC	2 cut(s)	610, 756
Eam1105I	GACNNNNNGTC	1 cut(s)	804
EarI	CTCTTC	2 cut(s)	610, 756
Eco130I	CCWWGG	2 cut(s)	401, 845
Eco147I	AGGCCT	1 cut(s)	320
Eco31I	GGTCTC	1 cut(s)	567
Eco32I	GATATC	2 cut(s)	658, 735
EcoNI	CCTNNNNNAGG	1 cut(s)	581
EcoRII	CCWGG	1 cut(s)	1298
EcoRV	GATATC	2 cut(s)	658, 735
EcoT14I	CCWWGG	2 cut(s)	401, 845
EcoT22I	ATGCAT	2 cut(s)	429, 1159
ErhI	CCWWGG	2 cut(s)	401, 845
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FaqI	GGGAC	2 cut(s)	475, 478
FauI	CCCGC	1 cut(s)	403
FblI	GTMKAC	2 cut(s)	355, 820
Fnu4HI	GCNGC	2 cut(s)	417, 627
FokI	GGATG	3 cut(s)	464, 1019, 1198
Fsp4HI	GCNGC	2 cut(s)	417, 627
FspBI	CTAG	2 cut(s)	681, 788
GluI	GCNGC	2 cut(s)	417, 627
HaeIII	GGCC	1 cut(s)	320
HinfI	GANTC	4 cut(s)	118, 148, 466, 909
HphI	GGTGA	3 cut(s)	1085, 1093, 1328
Hpy166II	GTNNAC	6 cut(s)	356, 528, 743, 821, 833, 1084
Hpy188I	TCNGA	2 cut(s)	216, 368
Hpy188III	TCNNGA	6 cut(s)	265, 346, 433, 650, 681, 1225
Hpy8I	GTNNAC	6 cut(s)	356, 528, 743, 821, 833, 1084
HpyAV	CCTTC	6 cut(s)	191, 331, 392, 503, 931, 1014
HpyCH4III	ACNGT	3 cut(s)	830, 941, 1176
HpyCH4IV	ACGT	1 cut(s)	1315
HpyCH4V	TGCA	9 cut(s)	14, 419, 427, 935, 964, 982, 1064, 1070, 1157
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 33, 59, 85, 416
HpyF3I	CTNAG	5 cut(s)	299, 468, 569, 598, 694
HpySE526I	ACGT	1 cut(s)	1315
Kzo9I	GATC	4 cut(s)	368, 474, 1253, 1327
LmnI	GCTCC	1 cut(s)	280
Lsp1109I	GCAGC	2 cut(s)	403, 613
LweI	GCATC	2 cut(s)	443, 1144
MaeI	CTAG	2 cut(s)	681, 788
MaeII	ACGT	1 cut(s)	1315
MaeIII	GTNAC	1 cut(s)	697
MalI	GATC	4 cut(s)	370, 476, 1255, 1329
MboI	GATC	4 cut(s)	368, 474, 1253, 1327
MboII	GAAGA	3 cut(s)	597, 743, 1250
MfeI	CAATTG	1 cut(s)	192
MflI	RGATCY	1 cut(s)	368
MluCI	AATT	7 cut(s)	162, 192, 208, 218, 390, 445, 645
MlyI	GAGTC	1 cut(s)	460
MmeI	TCCRAC	1 cut(s)	1262
MnlI	CCTC	9 cut(s)	132, 342, 450, 587, 613, 759, 765, 967, 1072
Mph1103I	ATGCAT	2 cut(s)	429, 1159
MseI	TTAA	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	328
MspR9I	CCNGG	1 cut(s)	1300
MunI	CAATTG	1 cut(s)	192
Mva1269I	GAATGC	1 cut(s)	708
MvaI	CCWGG	1 cut(s)	1300
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	5 cut(s)	11, 33, 59, 85, 416
NcoI	CCATGG	1 cut(s)	401
NdeII	GATC	4 cut(s)	368, 474, 1253, 1327
NlaIV	GGNNCC	2 cut(s)	783, 852
NsiI	ATGCAT	2 cut(s)	429, 1159
NspV	TTCGAA	1 cut(s)	222
PagI	TCATGA	2 cut(s)	649, 1224
PaqCI	CACCTGC	1 cut(s)	1055
PceI	AGGCCT	1 cut(s)	320
PctI	GAATGC	1 cut(s)	708
PfeI	GAWTC	3 cut(s)	118, 148, 909
PkrI	GCNGC	2 cut(s)	418, 628
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
Ppu21I	YACGTR	1 cut(s)	1316
Psp6I	CCWGG	1 cut(s)	1298
PspGI	CCWGG	1 cut(s)	1298
PspN4I	GGNNCC	2 cut(s)	783, 852
PstI	CTGCAG	1 cut(s)	1066
PstNI	CAGNNNCTG	1 cut(s)	814
PsuI	RGATCY	1 cut(s)	368
PvuII	CAGCTG	1 cut(s)	328
RsaI	GTAC	2 cut(s)	1055, 1314
RsaNI	GTAC	2 cut(s)	1054, 1313
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	2 cut(s)	417, 627
Sau3AI	GATC	4 cut(s)	368, 474, 1253, 1327
SchI	GAGTC	1 cut(s)	460
ScrFI	CCNGG	1 cut(s)	1300
SfaNI	GCATC	2 cut(s)	443, 1144
SfcI	CTRYAG	1 cut(s)	1062
SfuI	TTCGAA	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	769
SmoI	CTYRAG	1 cut(s)	769
Sse9I	AATT	7 cut(s)	162, 192, 208, 218, 390, 445, 645
SseBI	AGGCCT	1 cut(s)	320
SsiI	CCGC	2 cut(s)	88, 410
SspMI	CTAG	2 cut(s)	681, 788
StuI	AGGCCT	1 cut(s)	320
StyD4I	CCNGG	1 cut(s)	1298
StyI	CCWWGG	2 cut(s)	401, 845
TaaI	ACNGT	3 cut(s)	830, 941, 1176
TaiI	ACGT	1 cut(s)	1318
TaqI	TCGA	5 cut(s)	222, 451, 731, 1047, 1323
TasI	AATT	7 cut(s)	162, 192, 208, 218, 390, 445, 645
TatI	WGTACW	1 cut(s)	1053
TfiI	GAWTC	3 cut(s)	118, 148, 909
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TscAI	CASTG	5 cut(s)	21, 476, 835, 867, 1008
TseI	GCWGC	2 cut(s)	416, 626
TspGWI	ACGGA	1 cut(s)	902
TspRI	CASTG	5 cut(s)	21, 476, 835, 867, 1008
XagI	CCTNNNNNAGG	1 cut(s)	581
XapI	RAATTY	3 cut(s)	162, 218, 645
XbaI	TCTAGA	1 cut(s)	680
XmiI	GTMKAC	2 cut(s)	355, 820
XspI	CTAG	2 cut(s)	681, 788
Zsp2I	ATGCAT	2 cut(s)	429, 1159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.