Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004965.1

Orthogroup ID

OG0014115

Physical Location & Seq

Genomic Coordinates Forward (+)

149024 .. 152678

Gene Structure 3655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004965.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

atggcaagctgtgcagttcacggtggctgtgtcagcgactacatagccgtcactgtttcagccatttgcttcattctgctcgtttcgcggttaattttgccctttgtggttcacaaacttccttgtgcgaagcgaagtggcttttggattccagtgattcaagttttcgccagcttcaaccttgtgttgtcaattgtgatgtctctcaatttcgtgaaatttgaaaagagacattggtggcagtcctgctacgtctgggcagtctggattgaagctccacttggctttggtttgctgctgagctgtcgcatatcacaggcctttcaactatattatatttttgtcaagaggtgtctaccaccaatcagatcatatgttttccttccactaattctctcgccatggattactggagctgcatttatccatatcacaaggcctctaaattatcggtgccacatgggggctcagtggatcattccgtctatgtccctccacacaacatatgttgccattttggttgctttcacttgtgctattcggcatatagagttcaggtttgatgaactcagagacctctggcagggaatacttgtctcggcctcttctattggagtatgggtggttgcatacgttttgaatgaaattcatgatgatatctcatggcttcaagttgcctccagatttgtgctcttagtaacgacgagcattcttgtattagctatcttttcgatatcaagttcacaacctcttctatcgcaaatcagcttgaggaaaagggaacctcgagcatatgagtcaatgggtcaggctctgggaatacctgacagtggactgttagtgcaaagggaaccagcatgtgtcgtagatcctaatgaaccacttgataaacttcttctaaacaaaagattccgccagtcattcatggcatttgcagacagttgtttggcaggggagagtgtccatttttttgaggaagtgcatgaactcggtaaaatacctgtggatgaccctgtaagaagaatttacatggcacgccatatcattgacaagtacataattgcaggggcggcagtggaggtgaacatctctcacagaaccagacaagagatcttgactacttccaacctggcacaaccaaatctttttaatgacgcgttaactgagctaatacacttgatgaaaatgaacttggcaagagattactggtcatctatgttcttcatgaagttgaaagaagaagtcagtatgagatctggggcccaagaactggaacagatgagaggttggaactactctcccaggttgagttctgtacatggtggtgatgatccatttcaccaagaacaagaaccattttcgattgattctggctccaacactgaagaccatgatgatgaaccaagaatcatgagtagatttttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0004930 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005886 GO:0006950 GO:0007154 GO:0007165 GO:0007186 GO:0008047 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009987 GO:0010008 GO:0010033 GO:0010035 GO:0010182 GO:0012505 GO:0016020 GO:0023052 GO:0030234 GO:0030695 GO:0031090 GO:0031410 GO:0031982 GO:0033993 GO:0034284 GO:0038023 GO:0042127 GO:0042221 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051345 GO:0051716 GO:0060089 GO:0060589 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071322 GO:0071944 GO:0097305 GO:0097708 GO:0098588 GO:0098772 GO:0098805 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RGS

Protein Analysis

475

Amino Acids

54.18

Weight (kDa)

6.76

Isoelectric Point (pI)

59.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26090 AT3G26090
fragaria_vesca	FvH4_4g24980
malus_domestica	MD13G1107500.v1.1 MD16G1107500.v1.1
prunus_persica	Prupe.1G238900_v2.0.a1
pyrus_communis	pycom13g09310 pycom16g09160
rosa_chinensis	RchiOBHm_Chr4g0432041
rosa_laevigata	RLG00000006867
rosa_multiflora	Rmu_sc0004965.1_g000023
rosa_roxburghii	Rroxscaffold_5G00373590
rosa_rugosa	Rorug04G0254400
rosa_samantha	Rh4AG311700 Rh4BG318900 Rh4CG334400
rosa_wichuraiana	Rw4G027100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	453
AccB7I	CCANNNNNTGG	1 cut(s)	1270
AccI	GTMKAC	1 cut(s)	355
AccII	CGCG	2 cut(s)	88, 1157
AciI	CCGC	3 cut(s)	88, 913, 1070
AclWI	GGATC	3 cut(s)	482, 863, 1325
AcsI	RAATTY	3 cut(s)	218, 645, 1023
AcuI	CTGAAG	1 cut(s)	1404
AfaI	GTAC	2 cut(s)	1055, 1317
AfiI	CCNNNNNNNGG	4 cut(s)	463, 583, 830, 1270
AflIII	ACRYGT	1 cut(s)	1155
AgsI	TTSAA	8 cut(s)	161, 178, 224, 272, 326, 640, 671, 1234
AjnI	CCWGG	2 cut(s)	1128, 1301
AjuI	GAANNNNNNNTTGG	6 cut(s)	127, 159, 264, 296, 1175, 1207
AluBI	AGCT	8 cut(s)	9, 174, 275, 303, 416, 722, 768, 1168
AluI	AGCT	8 cut(s)	9, 174, 275, 303, 416, 722, 768, 1168
Alw21I	GWGCWC	1 cut(s)	693
Alw26I	GTCTC	4 cut(s)	207, 223, 567, 601
AlwI	GGATC	3 cut(s)	482, 863, 1325
AlwNI	CAGNNNCTG	1 cut(s)	814
Ama87I	CYCGRG	1 cut(s)	786
AoxI	GGCC	4 cut(s)	318, 437, 600, 1260
ApaI	GGGCCC	1 cut(s)	1264
ApeKI	GCWGC	2 cut(s)	295, 416
ApoI	RAATTY	3 cut(s)	218, 645, 1023
AspS9I	GGNCC	2 cut(s)	1260, 1261
AsuHPI	GGTGA	3 cut(s)	1093, 1331, 1337
AvaI	CYCGRG	1 cut(s)	786
BaeGI	GKGCMC	1 cut(s)	1264
BanI	GGYRCC	1 cut(s)	453
BanII	GRGCYC	2 cut(s)	469, 1264
BbsI	GAAGAC	1 cut(s)	1392
Bbv12I	GWGCWC	1 cut(s)	693
BbvI	GCAGC	2 cut(s)	282, 403
BceAI	ACGGC	1 cut(s)	32
BciT130I	CCWGG	2 cut(s)	1130, 1303
BcoDI	GTCTC	4 cut(s)	207, 223, 567, 601
BglII	AGATCT	2 cut(s)	1110, 1253
BisI	GCNGC	3 cut(s)	296, 417, 1071
BlpI	GCTNAGC	1 cut(s)	299
BlsI	GCNGC	3 cut(s)	297, 418, 1072
Bme1390I	CCNGG	2 cut(s)	1130, 1303
BmeT110I	CYCGRG	1 cut(s)	786
BmgT120I	GGNCC	2 cut(s)	1260, 1261
BmiI	GGNNCC	6 cut(s)	455, 783, 852, 1261, 1262, 1375
BmrFI	CCNGG	2 cut(s)	1130, 1303
BpiI	GAAGAC	1 cut(s)	1392
BpmI	CTGGAG	2 cut(s)	432, 664
Bpu1102I	GCTNAGC	1 cut(s)	299
BpuEI	CTTGAG	1 cut(s)	790
BsaI	GGTCTC	1 cut(s)	567
BsaJI	CCNNGG	2 cut(s)	401, 1301
BsaXI	ACNNNNNCTCC	2 cut(s)	606, 636
Bsc4I	CCNNNNNNNGG	4 cut(s)	463, 583, 830, 1270
Bse1I	ACTGG	5 cut(s)	152, 415, 916, 1211, 1275
BseBI	CCWGG	2 cut(s)	1130, 1303
BseDI	CCNNGG	2 cut(s)	401, 1301
BseGI	GGATG	1 cut(s)	1012
BseLI	CCNNNNNNNGG	4 cut(s)	463, 583, 830, 1270
BseMII	CTCAG	4 cut(s)	290, 482, 583, 1155
BseNI	ACTGG	5 cut(s)	152, 415, 916, 1211, 1275
BseSI	GKGCMC	1 cut(s)	1264
BseXI	GCAGC	2 cut(s)	282, 403
BsgI	GTGCAG	1 cut(s)	33
Bsh1236I	CGCG	2 cut(s)	88, 1157
BshFI	GGCC	4 cut(s)	320, 439, 602, 1262
BshNI	GGYRCC	1 cut(s)	453
BsiHKAI	GWGCWC	1 cut(s)	693
BsiHKCI	CYCGRG	1 cut(s)	786
BslFI	GGGAC	1 cut(s)	475
BslI	CCNNNNNNNGG	4 cut(s)	463, 583, 830, 1270
BsmAI	GTCTC	4 cut(s)	207, 223, 567, 601
BsmFI	GGGAC	1 cut(s)	475
BsmI	GAATGC	1 cut(s)	708
BsnI	GGCC	4 cut(s)	320, 439, 602, 1262
Bso31I	GGTCTC	1 cut(s)	567
BsoBI	CYCGRG	1 cut(s)	786
Bsp120I	GGGCCC	1 cut(s)	1260
Bsp1286I	GDGCHC	3 cut(s)	469, 693, 1264
Bsp1407I	TGTACA	1 cut(s)	1315
Bsp143I	GATC	6 cut(s)	368, 474, 868, 1110, 1253, 1330
Bsp1720I	GCTNAGC	1 cut(s)	299
Bsp19I	CCATGG	1 cut(s)	401
BspACI	CCGC	3 cut(s)	88, 913, 1070
BspANI	GGCC	4 cut(s)	320, 439, 602, 1262
BspCNI	CTCAG	4 cut(s)	291, 481, 582, 1156
BspFNI	CGCG	2 cut(s)	88, 1157
BspHI	TCATGA	3 cut(s)	649, 1224, 1410
BspLI	GGNNCC	6 cut(s)	455, 783, 852, 1261, 1262, 1375
BspPI	GGATC	3 cut(s)	482, 863, 1325
BspT107I	GGYRCC	1 cut(s)	453
BspTNI	GGTCTC	1 cut(s)	567
BsrGI	TGTACA	1 cut(s)	1315
BsrI	ACTGG	5 cut(s)	152, 415, 916, 1211, 1275
BssECI	CCNNGG	2 cut(s)	401, 1301
BssMI	GATC	6 cut(s)	368, 474, 868, 1110, 1253, 1330
BssT1I	CCWWGG	1 cut(s)	401
Bst2UI	CCWGG	2 cut(s)	1130, 1303
Bst4CI	ACNGT	5 cut(s)	23, 55, 830, 837, 941
Bst6I	CTCTTC	2 cut(s)	610, 756
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstAUI	TGTACA	1 cut(s)	1315
BstC8I	GCNNGC	3 cut(s)	7, 172, 1036
BstDEI	CTNAG	5 cut(s)	299, 468, 569, 694, 1164
BstDSI	CCRYGG	1 cut(s)	401
BstENI	CCTNNNNNAGG	1 cut(s)	581
BstF5I	GGATG	1 cut(s)	1012
BstFNI	CGCG	2 cut(s)	88, 1157
BstKTI	GATC	6 cut(s)	371, 477, 871, 1113, 1256, 1333
BstMAI	GTCTC	4 cut(s)	207, 223, 567, 601
BstMBI	GATC	6 cut(s)	368, 474, 868, 1110, 1253, 1330
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 33, 85, 1070
BstNI	CCWGG	2 cut(s)	1130, 1303
BstNSI	RCATGY	1 cut(s)	861
BstSCI	CCNGG	2 cut(s)	1128, 1301
BstSLI	GKGCMC	1 cut(s)	1264
BstUI	CGCG	2 cut(s)	88, 1157
BstV1I	GCAGC	2 cut(s)	282, 403
BstV2I	GAAGAC	1 cut(s)	1392
BstX2I	RGATCY	3 cut(s)	868, 1110, 1253
BstYI	RGATCY	3 cut(s)	868, 1110, 1253
BsuRI	GGCC	4 cut(s)	320, 439, 602, 1262
BtgI	CCRYGG	1 cut(s)	401
BtsCI	GGATG	1 cut(s)	1012
BtsI	GCAGTG	1 cut(s)	1080
BtsIMutI	CAGTG	6 cut(s)	51, 159, 476, 835, 1080, 1380
Cac8I	GCNNGC	3 cut(s)	7, 172, 1036
CaiI	CAGNNNCTG	1 cut(s)	814
CciI	TCATGA	3 cut(s)	649, 1224, 1410
Cfr13I	GGNCC	2 cut(s)	1260, 1261
CseI	GACGC	1 cut(s)	1163
Csp6I	GTAC	2 cut(s)	1054, 1316
CviQI	GTAC	2 cut(s)	1054, 1316
DdeI	CTNAG	5 cut(s)	299, 468, 569, 694, 1164
DpnI	GATC	6 cut(s)	370, 476, 870, 1112, 1255, 1332
DpnII	GATC	6 cut(s)	368, 474, 868, 1110, 1253, 1330
Eam1104I	CTCTTC	2 cut(s)	610, 756
EarI	CTCTTC	2 cut(s)	610, 756
EciI	GGCGGA	1 cut(s)	902
Eco130I	CCWWGG	1 cut(s)	401
Eco147I	AGGCCT	2 cut(s)	320, 439
Eco24I	GRGCYC	2 cut(s)	469, 1264
Eco31I	GGTCTC	1 cut(s)	567
Eco32I	GATATC	2 cut(s)	658, 735
Eco57I	CTGAAG	1 cut(s)	1404
Eco88I	CYCGRG	1 cut(s)	786
EcoNI	CCTNNNNNAGG	1 cut(s)	581
EcoO109I	RGGNCCY	1 cut(s)	1260
EcoRII	CCWGG	2 cut(s)	1128, 1301
EcoRV	GATATC	2 cut(s)	658, 735
EcoT14I	CCWWGG	1 cut(s)	401
EcoT38I	GRGCYC	2 cut(s)	469, 1264
ErhI	CCWWGG	1 cut(s)	401
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FaqI	GGGAC	1 cut(s)	475
FauNDI	CATATG	3 cut(s)	373, 505, 793
FblI	GTMKAC	1 cut(s)	355
Fnu4HI	GCNGC	3 cut(s)	296, 417, 1071
FokI	GGATG	1 cut(s)	1019
FriOI	GRGCYC	2 cut(s)	469, 1264
Fsp4HI	GCNGC	3 cut(s)	296, 417, 1071
GluI	GCNGC	3 cut(s)	296, 417, 1071
GsuI	CTGGAG	2 cut(s)	432, 664
HaeIII	GGCC	4 cut(s)	320, 439, 602, 1262
HgaI	GACGC	1 cut(s)	1163
HincII	GTYRAC	1 cut(s)	1161
HindII	GTYRAC	1 cut(s)	1161
HinfI	GANTC	6 cut(s)	148, 157, 797, 909, 1367, 1407
HpaI	GTTAAC	1 cut(s)	1161
HphI	GGTGA	3 cut(s)	1093, 1331, 1337
Hpy166II	GTNNAC	7 cut(s)	19, 112, 356, 743, 833, 1084, 1161
Hpy188I	TCNGA	2 cut(s)	368, 572
Hpy188III	TCNNGA	8 cut(s)	214, 265, 346, 650, 681, 1114, 1225, 1411
Hpy8I	GTNNAC	7 cut(s)	19, 112, 356, 743, 833, 1084, 1161
Hpy99I	CGWCG	1 cut(s)	706
HpyAV	CCTTC	1 cut(s)	392
HpyCH4III	ACNGT	5 cut(s)	23, 55, 830, 837, 941
HpyCH4IV	ACGT	2 cut(s)	252, 633
HpyCH4V	TGCA	7 cut(s)	14, 419, 629, 844, 935, 982, 1064
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 33, 85, 1070
HpyF3I	CTNAG	5 cut(s)	299, 468, 569, 694, 1164
HpySE526I	ACGT	2 cut(s)	252, 633
KspAI	GTTAAC	1 cut(s)	1161
Kzo9I	GATC	6 cut(s)	368, 474, 868, 1110, 1253, 1330
LmnI	GCTCC	3 cut(s)	280, 413, 1379
Lsp1109I	GCAGC	2 cut(s)	282, 403
MaeII	ACGT	2 cut(s)	252, 633
MaeIII	GTNAC	2 cut(s)	49, 697
MalI	GATC	6 cut(s)	370, 476, 870, 1112, 1255, 1332
MboI	GATC	6 cut(s)	368, 474, 868, 1110, 1253, 1330
MboII	GAAGA	7 cut(s)	597, 743, 887, 1032, 1213, 1250, 1397
MfeI	CAATTG	1 cut(s)	192
MflI	RGATCY	3 cut(s)	868, 1110, 1253
MhlI	GDGCHC	3 cut(s)	469, 693, 1264
MluCI	AATT	9 cut(s)	93, 192, 208, 218, 390, 445, 645, 1023, 1059
MluI	ACGCGT	1 cut(s)	1155
MlyI	GAGTC	1 cut(s)	806
MmeI	TCCRAC	3 cut(s)	1149, 1268, 1401
MseI	TTAA	3 cut(s)	92, 1149, 1160
MslI	CAYNNNNRTG	2 cut(s)	1323, 1395
MspR9I	CCNGG	2 cut(s)	1130, 1303
MunI	CAATTG	1 cut(s)	192
Mva1269I	GAATGC	1 cut(s)	708
MvaI	CCWGG	2 cut(s)	1130, 1303
MvnI	CGCG	2 cut(s)	88, 1157
MwoI	GCNNNNNNNGC	4 cut(s)	11, 33, 85, 1070
NcoI	CCATGG	1 cut(s)	401
NdeI	CATATG	3 cut(s)	373, 505, 793
NdeII	GATC	6 cut(s)	368, 474, 868, 1110, 1253, 1330
NlaIV	GGNNCC	6 cut(s)	455, 783, 852, 1261, 1262, 1375
NmeAIII	GCCGAG	1 cut(s)	578
NmuCI	GTSAC	1 cut(s)	49
NspI	RCATGY	1 cut(s)	861
PaeR7I	CTCGAG	1 cut(s)	786
PagI	TCATGA	3 cut(s)	649, 1224, 1410
PceI	AGGCCT	2 cut(s)	320, 439
PctI	GAATGC	1 cut(s)	708
PfeI	GAWTC	5 cut(s)	148, 157, 909, 1367, 1407
PflMI	CCANNNNNTGG	1 cut(s)	1270
PkrI	GCNGC	3 cut(s)	297, 418, 1072
PleI	GAGTC	1 cut(s)	805
PpsI	GAGTC	1 cut(s)	805
Psp6I	CCWGG	2 cut(s)	1128, 1301
PspGI	CCWGG	2 cut(s)	1128, 1301
PspN4I	GGNNCC	6 cut(s)	455, 783, 852, 1261, 1262, 1375
PspOMI	GGGCCC	1 cut(s)	1260
PspPI	GGNCC	2 cut(s)	1260, 1261
PspXI	VCTCGAGB	1 cut(s)	786
PstNI	CAGNNNCTG	1 cut(s)	814
PsuI	RGATCY	3 cut(s)	868, 1110, 1253
RsaI	GTAC	2 cut(s)	1055, 1317
RsaNI	GTAC	2 cut(s)	1054, 1316
RseI	CAYNNNNRTG	2 cut(s)	1323, 1395
SaqAI	TTAA	3 cut(s)	92, 1149, 1160
SatI	GCNGC	3 cut(s)	296, 417, 1071
Sau3AI	GATC	6 cut(s)	368, 474, 868, 1110, 1253, 1330
Sau96I	GGNCC	2 cut(s)	1260, 1261
SchI	GAGTC	1 cut(s)	806
ScrFI	CCNGG	2 cut(s)	1130, 1303
SduI	GDGCHC	3 cut(s)	469, 693, 1264
Sfr274I	CTCGAG	1 cut(s)	786
SlaI	CTCGAG	1 cut(s)	786
SmiMI	CAYNNNNRTG	2 cut(s)	1323, 1395
SmlI	CTYRAG	2 cut(s)	769, 786
SmoI	CTYRAG	2 cut(s)	769, 786
Sse9I	AATT	9 cut(s)	93, 192, 208, 218, 390, 445, 645, 1023, 1059
SseBI	AGGCCT	2 cut(s)	320, 439
SsiI	CCGC	3 cut(s)	88, 913, 1070
StuI	AGGCCT	2 cut(s)	320, 439
StyD4I	CCNGG	2 cut(s)	1128, 1301
StyI	CCWWGG	1 cut(s)	401
TaaI	ACNGT	5 cut(s)	23, 55, 830, 837, 941
TaiI	ACGT	2 cut(s)	255, 636
TaqI	TCGA	3 cut(s)	731, 787, 1361
TasI	AATT	9 cut(s)	93, 192, 208, 218, 390, 445, 645, 1023, 1059
TatI	WGTACW	2 cut(s)	1053, 1315
TauI	GCSGC	1 cut(s)	1073
TfiI	GAWTC	5 cut(s)	148, 157, 909, 1367, 1407
Tru1I	TTAA	3 cut(s)	92, 1149, 1160
Tru9I	TTAA	3 cut(s)	92, 1149, 1160
TscAI	CASTG	6 cut(s)	58, 159, 476, 835, 1080, 1387
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	2 cut(s)	295, 416
Tsp45I	GTSAC	1 cut(s)	49
TspGWI	ACGGA	1 cut(s)	471
TspRI	CASTG	6 cut(s)	58, 159, 476, 835, 1080, 1387
Van91I	CCANNNNNTGG	1 cut(s)	1270
XagI	CCTNNNNNAGG	1 cut(s)	581
XapI	RAATTY	3 cut(s)	218, 645, 1023
XceI	RCATGY	1 cut(s)	861
XhoI	CTCGAG	1 cut(s)	786
XmiI	GTMKAC	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.