FvH4_4g25970

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0018025
Physical Location & Seq
Forward (+)
27582085 .. 27583397
1313 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g25970.t1

Sequence Viewer

Length: 363 bp
ATGATGGGAACAAGGGACCATGCACTGGGTAGGAGTTTAGCCGAACGGGTTTCTGGATTTTCATCATTGCGAAGAAATCTTCTACGTCTGTCACCAAGGCTGGCCAATCTCCCTGAAGAGGTGAAGAAGAAACTCGAAGATCCTGTTAGTAGGTATAATTTTGGATGGAGTCATGGAAAGGAAAAGCTGGAATCTGGAAAGCCAGATATGCTAAAAGGCTCTTTCTATGCAGACCCGATATTAGATACACCAACAACAGATGAGGCTCTAATTCAAAGGTTTTCATTCATGGTCCTTGTAGGTACCCATCATATTGTGGATCAGCCTAAACATGAGTTGCCAGAACTTGAAGTGGGTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

121

Amino Acids

13.6

Weight (kDa)

6.98

Isoelectric Point (pI)

39.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 302
AccB1I GGYRCC 1 cut(s) 302
AccB7I CCANNNNNTGG 1 cut(s) 25
AclWI GGATC 2 cut(s) 134, 327
AcoI YGGCCR 1 cut(s) 102
AcuI CTGAAG 1 cut(s) 135
AfaI GTAC 1 cut(s) 304
AfiI CCNNNNNNNGG 2 cut(s) 25, 118
AgsI TTSAA 2 cut(s) 275, 350
AluBI AGCT 1 cut(s) 187
AluI AGCT 1 cut(s) 187
AlwI GGATC 2 cut(s) 134, 327
AoxI GGCC 1 cut(s) 102
Asp718I GGTACC 1 cut(s) 302
AspS9I GGNCC 2 cut(s) 16, 292
AsuHPI GGTGA 2 cut(s) 84, 133
AvaII GGWCC 2 cut(s) 16, 292
BalI TGGCCA 1 cut(s) 104
BanI GGYRCC 1 cut(s) 302
BccI CCATC 2 cut(s) 159, 315
Bme18I GGWCC 2 cut(s) 16, 292
BmgT120I GGNCC 2 cut(s) 16, 292
BmiI GGNNCC 2 cut(s) 17, 304
BmrI ACTGGG 1 cut(s) 35
BmuI ACTGGG 1 cut(s) 35
BsaBI GATNNNNATC 1 cut(s) 61
BsaJI CCNNGG 1 cut(s) 95
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 118
Bse1I ACTGG 1 cut(s) 30
Bse3DI GCAATG 1 cut(s) 65
Bse8I GATNNNNATC 1 cut(s) 61
BseDI CCNNGG 1 cut(s) 95
BseGI GGATG 1 cut(s) 170
BseJI GATNNNNATC 1 cut(s) 61
BseLI CCNNNNNNNGG 2 cut(s) 25, 118
BseMI GCAATG 1 cut(s) 65
BseNI ACTGG 1 cut(s) 30
BshFI GGCC 1 cut(s) 104
BshNI GGYRCC 1 cut(s) 302
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 2 cut(s) 25, 118
BsmFI GGGAC 1 cut(s) 29
BsnI GGCC 1 cut(s) 104
Bsp143I GATC 2 cut(s) 139, 319
BspANI GGCC 1 cut(s) 104
BspLI GGNNCC 2 cut(s) 17, 304
BspPI GGATC 2 cut(s) 134, 327
BspT107I GGYRCC 1 cut(s) 302
BsrDI GCAATG 1 cut(s) 65
BsrI ACTGG 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 95
BssMI GATC 2 cut(s) 139, 319
BssT1I CCWWGG 1 cut(s) 95
Bst6I CTCTTC 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 102
BstF5I GGATG 1 cut(s) 170
BstKTI GATC 2 cut(s) 142, 322
BstMBI GATC 2 cut(s) 139, 319
BstMWI GCNNNNNNNGC 1 cut(s) 208
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BsuRI GGCC 1 cut(s) 104
BtsCI GGATG 1 cut(s) 170
BtsIMutI CAGTG 1 cut(s) 23
Cac8I GCNNGC 1 cut(s) 102
Cfr13I GGNCC 2 cut(s) 16, 292
Csp6I GTAC 1 cut(s) 303
CviAII CATG 4 cut(s) 20, 173, 289, 332
CviJI RGCY 8 cut(s) 41, 100, 104, 187, 202, 219, 266, 325
CviKI_1 RGCY 8 cut(s) 41, 100, 104, 187, 202, 219, 266, 325
CviQI GTAC 1 cut(s) 303
DpnI GATC 2 cut(s) 141, 321
DpnII GATC 2 cut(s) 139, 319
EaeI YGGCCR 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco130I CCWWGG 1 cut(s) 95
Eco47I GGWCC 2 cut(s) 16, 292
Eco57I CTGAAG 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 95
ErhI CCWWGG 1 cut(s) 95
FaeI CATG 4 cut(s) 23, 176, 292, 335
FaiI YATR 9 cut(s) 21, 156, 174, 209, 228, 290, 312, 333, 359
FaqI GGGAC 1 cut(s) 29
FatI CATG 4 cut(s) 19, 172, 288, 331
FokI GGATG 1 cut(s) 177
HaeIII GGCC 1 cut(s) 104
Hin1II CATG 4 cut(s) 23, 176, 292, 335
HinfI GANTC 2 cut(s) 169, 191
HphI GGTGA 2 cut(s) 84, 133
Hpy188III TCNNGA 2 cut(s) 54, 195
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 2 cut(s) 23, 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 208
HpySE526I ACGT 1 cut(s) 85
Hsp92II CATG 4 cut(s) 23, 176, 292, 335
KpnI GGTACC 1 cut(s) 306
Kzo9I GATC 2 cut(s) 139, 319
LpnPI CCDG 9 cut(s) 11, 39, 86, 126, 156, 173, 180, 216, 354
MaeII ACGT 1 cut(s) 85
MaeIII GTNAC 1 cut(s) 90
MalI GATC 2 cut(s) 141, 321
MboI GATC 2 cut(s) 139, 319
MboII GAAGA 6 cut(s) 71, 84, 128, 136, 139, 149
MflI RGATCY 1 cut(s) 139
MlsI TGGCCA 1 cut(s) 104
MluCI AATT 2 cut(s) 157, 270
MluNI TGGCCA 1 cut(s) 104
MlyI GAGTC 1 cut(s) 178
MnlI CCTC 2 cut(s) 112, 256
Mox20I TGGCCA 1 cut(s) 104
MscI TGGCCA 1 cut(s) 104
Msp20I TGGCCA 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 208
NdeII GATC 2 cut(s) 139, 319
NlaIII CATG 4 cut(s) 23, 176, 292, 335
NlaIV GGNNCC 2 cut(s) 17, 304
NmuCI GTSAC 1 cut(s) 90
PfeI GAWTC 1 cut(s) 191
PflMI CCANNNNNTGG 1 cut(s) 25
PleI GAGTC 1 cut(s) 177
PpsI GAGTC 1 cut(s) 177
PspN4I GGNNCC 2 cut(s) 17, 304
PspPI GGNCC 2 cut(s) 16, 292
PsuI RGATCY 1 cut(s) 139
RsaI GTAC 1 cut(s) 304
RsaNI GTAC 1 cut(s) 303
Sau3AI GATC 2 cut(s) 139, 319
Sau96I GGNCC 2 cut(s) 16, 292
SchI GAGTC 1 cut(s) 178
SetI ASST 6 cut(s) 88, 123, 155, 189, 281, 304
SinI GGWCC 2 cut(s) 16, 292
Sse9I AATT 2 cut(s) 157, 270
StyI CCWWGG 1 cut(s) 95
TaiI ACGT 1 cut(s) 88
TaqI TCGA 1 cut(s) 135
TasI AATT 2 cut(s) 157, 270
TfiI GAWTC 1 cut(s) 191
TscAI CASTG 1 cut(s) 30
TseFI GTSAC 1 cut(s) 90
Tsp45I GTSAC 1 cut(s) 90
TspDTI ATGAA 3 cut(s) 51, 273, 277
TspRI CASTG 1 cut(s) 30
Van91I CCANNNNNTGG 1 cut(s) 25
VpaK11BI GGWCC 2 cut(s) 16, 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.