MD02G1055000.v1.1

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0018025
Physical Location & Seq
Reverse (-)
4447868 .. 4455005
7138 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1055000.v1.1.491

Sequence Viewer

Length: 408 bp
ATGCCTCCGCCCTCCGACCCCGCCGTCCCCACCGTCCCCACCGTCACACCGGTCACCATATCCTACTCCGAGCTCCAAGACAAGGACAAAGACTTGTCAGTGAAGATTGAAGAAGGATTTGGACCAAATGGGTTGGGAATTCTATCAATCACTCATACGTTAAAAGGCTCGTTTTATGCAAATCCAATATTGGATAGCCCTACGACAGATGAATCTCTAATTCAAAGGTATCCCTCATACTGTGGTTCAAATATATGGCCCAATAGTGAATTGCCAGAACTAGAAGTCGCCTTCAAAGCTCTTGGAAAGGTGATCCTTGGAGTTGGGCTTATGGTCGCATATCACTGTGACAGATACGAAAGGATAAAGAATGCTTTGGGCCCGAACGTTGAGGAGTTGAGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

136

Amino Acids

14.67

Weight (kDa)

4.68

Isoelectric Point (pI)

50.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 23
AciI CCGC 2 cut(s) 8, 21
AclI AACGTT 1 cut(s) 387
AclWI GGATC 1 cut(s) 307
AcsI RAATTY 1 cut(s) 138
AfiI CCNNNNNNNGG 1 cut(s) 82
AgeI ACCGGT 1 cut(s) 49
AgsI TTSAA 4 cut(s) 110, 224, 249, 295
AjuI GAANNNNNNNTTGG 2 cut(s) 102, 134
AluBI AGCT 2 cut(s) 73, 299
AluI AGCT 2 cut(s) 73, 299
Alw21I GWGCWC 1 cut(s) 75
AlwI GGATC 1 cut(s) 307
AoxI GGCC 2 cut(s) 257, 379
ApaI GGGCCC 1 cut(s) 383
ApoI RAATTY 1 cut(s) 138
AsiGI ACCGGT 1 cut(s) 49
AspS9I GGNCC 4 cut(s) 122, 258, 379, 380
AsuHPI GGTGA 2 cut(s) 46, 322
AvaII GGWCC 1 cut(s) 122
BaeGI GKGCMC 1 cut(s) 383
BanII GRGCYC 2 cut(s) 75, 383
Bbv12I GWGCWC 1 cut(s) 75
BceAI ACGGC 1 cut(s) 8
BciVI GTATCC 1 cut(s) 240
BfaI CTAG 1 cut(s) 281
BfuI GTATCC 1 cut(s) 240
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 4 cut(s) 122, 258, 379, 380
BmiI GGNNCC 1 cut(s) 381
BsaJI CCNNGG 1 cut(s) 316
BsaWI WCCGGW 1 cut(s) 49
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse118I RCCGGY 1 cut(s) 49
BseDI CCNNGG 1 cut(s) 316
BseLI CCNNNNNNNGG 1 cut(s) 82
BseRI GAGGAG 1 cut(s) 407
BseSI GKGCMC 1 cut(s) 383
BshFI GGCC 2 cut(s) 259, 381
BshTI ACCGGT 1 cut(s) 49
BsiHKAI GWGCWC 1 cut(s) 75
BsiSI CCGG 1 cut(s) 50
BslFI GGGAC 2 cut(s) 11, 20
BslI CCNNNNNNNGG 1 cut(s) 82
BsmFI GGGAC 2 cut(s) 11, 20
BsmI GAATGC 1 cut(s) 376
BsnI GGCC 2 cut(s) 259, 381
Bsp120I GGGCCC 1 cut(s) 379
Bsp1286I GDGCHC 2 cut(s) 75, 383
Bsp143I GATC 1 cut(s) 312
BspACI CCGC 2 cut(s) 8, 21
BspANI GGCC 2 cut(s) 259, 381
BspLI GGNNCC 1 cut(s) 381
BspPI GGATC 1 cut(s) 307
BsrFI RCCGGY 1 cut(s) 49
BssAI RCCGGY 1 cut(s) 49
BssECI CCNNGG 1 cut(s) 316
BssMI GATC 1 cut(s) 312
BssT1I CCWWGG 1 cut(s) 316
Bst4CI ACNGT 4 cut(s) 34, 43, 242, 347
BstEII GGTNACC 1 cut(s) 52
BstKTI GATC 1 cut(s) 315
BstMBI GATC 1 cut(s) 312
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstPI GGTNACC 1 cut(s) 52
BstSLI GKGCMC 1 cut(s) 383
BsuI GTATCC 1 cut(s) 240
BsuRI GGCC 2 cut(s) 259, 381
BtsIMutI CAGTG 2 cut(s) 105, 343
Cfr10I RCCGGY 1 cut(s) 49
Cfr13I GGNCC 4 cut(s) 122, 258, 379, 380
CspAI ACCGGT 1 cut(s) 49
CviJI RGCY 7 cut(s) 73, 168, 198, 259, 299, 328, 381
CviKI_1 RGCY 7 cut(s) 73, 168, 198, 259, 299, 328, 381
DpnI GATC 1 cut(s) 314
DpnII GATC 1 cut(s) 312
DrdI GACNNNNNNGTC 1 cut(s) 23
DseDI GACNNNNNNGTC 1 cut(s) 23
Ecl136II GAGCTC 1 cut(s) 73
Eco130I CCWWGG 1 cut(s) 316
Eco24I GRGCYC 2 cut(s) 75, 383
Eco47I GGWCC 1 cut(s) 122
Eco53kI GAGCTC 1 cut(s) 73
Eco91I GGTNACC 1 cut(s) 52
EcoICRI GAGCTC 1 cut(s) 73
EcoO65I GGTNACC 1 cut(s) 52
EcoRI GAATTC 1 cut(s) 138
EcoT14I CCWWGG 1 cut(s) 316
EcoT38I GRGCYC 2 cut(s) 75, 383
ErhI CCWWGG 1 cut(s) 316
FaiI YATR 8 cut(s) 59, 156, 177, 238, 254, 256, 332, 340
FaqI GGGAC 2 cut(s) 11, 20
FauI CCCGC 1 cut(s) 28
FriOI GRGCYC 2 cut(s) 75, 383
FspBI CTAG 1 cut(s) 281
HaeIII GGCC 2 cut(s) 259, 381
HapII CCGG 1 cut(s) 50
HinfI GANTC 1 cut(s) 212
HpaII CCGG 1 cut(s) 50
HphI GGTGA 2 cut(s) 46, 322
Hpy188I TCNGA 2 cut(s) 16, 70
HpyAV CCTTC 2 cut(s) 107, 301
HpyCH4III ACNGT 4 cut(s) 34, 43, 242, 347
HpyCH4IV ACGT 2 cut(s) 158, 387
HpyCH4V TGCA 1 cut(s) 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpySE526I ACGT 2 cut(s) 158, 387
Kzo9I GATC 1 cut(s) 312
LmnI GCTCC 1 cut(s) 78
LpnPI CCDG 2 cut(s) 63, 288
MaeI CTAG 1 cut(s) 281
MaeII ACGT 2 cut(s) 158, 387
MaeIII GTNAC 3 cut(s) 43, 52, 347
MalI GATC 1 cut(s) 314
MboI GATC 1 cut(s) 312
MboII GAAGA 2 cut(s) 115, 122
MhlI GDGCHC 2 cut(s) 75, 383
MluCI AATT 3 cut(s) 138, 219, 269
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 4 cut(s) 15, 22, 244, 385
MseI TTAA 1 cut(s) 161
MspI CCGG 1 cut(s) 50
Mva1269I GAATGC 1 cut(s) 376
MwoI GCNNNNNNNGC 1 cut(s) 296
NdeII GATC 1 cut(s) 312
NlaIV GGNNCC 1 cut(s) 381
NmuCI GTSAC 3 cut(s) 43, 52, 347
PctI GAATGC 1 cut(s) 376
PfeI GAWTC 1 cut(s) 212
PinAI ACCGGT 1 cut(s) 49
Psp124BI GAGCTC 1 cut(s) 75
Psp1406I AACGTT 1 cut(s) 387
PspEI GGTNACC 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 381
PspOMI GGGCCC 1 cut(s) 379
PspPI GGNCC 4 cut(s) 122, 258, 379, 380
SacI GAGCTC 1 cut(s) 75
SaqAI TTAA 1 cut(s) 161
Sau3AI GATC 1 cut(s) 312
Sau96I GGNCC 4 cut(s) 122, 258, 379, 380
SduI GDGCHC 2 cut(s) 75, 383
SetI ASST 6 cut(s) 75, 161, 230, 301, 312, 390
SinI GGWCC 1 cut(s) 122
Sse9I AATT 3 cut(s) 138, 219, 269
SsiI CCGC 2 cut(s) 8, 21
SspI AATATT 1 cut(s) 189
SspMI CTAG 1 cut(s) 281
SstI GAGCTC 1 cut(s) 75
StyI CCWWGG 1 cut(s) 316
TaaI ACNGT 4 cut(s) 34, 43, 242, 347
TaiI ACGT 2 cut(s) 161, 390
TasI AATT 3 cut(s) 138, 219, 269
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TscAI CASTG 2 cut(s) 105, 350
TseFI GTSAC 3 cut(s) 43, 52, 347
Tsp45I GTSAC 3 cut(s) 43, 52, 347
TspDTI ATGAA 1 cut(s) 225
TspRI CASTG 2 cut(s) 105, 350
VpaK11BI GGWCC 1 cut(s) 122
XapI RAATTY 1 cut(s) 138
XspI CTAG 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.