Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0018025

Physical Location & Seq

Genomic Coordinates Reverse (-)

4377923 .. 4379562

Gene Structure 1640 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1054000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGGTTGGGAATCCTATCAATCACTCAAGTTCCGGGATATTCTTCCTTGCGCAGGAATCTTCTACGCTTTTAACCTAGCCAATCTGCCTGAAGAGGTGAAGAAGGAACTGGAAGATCCTCATAGTAGGTACAATTTTGGATGGAGTCATGGAAAAGAGAAGCTGGAATTTGGAAAGCCGGATACGTTAAAAGGCTCGTTTTATGCAAATCCAATATTGGATAGCCCTACAACAGATGAATCTCTAATTCAAAGGTATCCATCATACTGTGGTTCAAATATATGGCCCAATAGTGAATTGCCAGAACTAGAAGTCAGTATGTTTTCCTTTAATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

113

Amino Acids

12.92

Weight (kDa)

4.81

Isoelectric Point (pI)

48.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018025)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25970
malus_domestica	MD00G1220200.v1.1 MD02G1050500.v1.1 MD02G1051000.v1.1 MD02G1052000.v1.1 MD02G1053400.v1.1 MD02G1054000.v1.1 MD02G1055000.v1.1
rosa_multiflora	Rmu_sc0003305.1_g000015
rosa_samantha	Rh2BG056500 Rh2DG058000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	52
AclWI	GGATC	1 cut(s)	110
AcsI	RAATTY	1 cut(s)	167
AcuI	CTGAAG	1 cut(s)	111
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	2 cut(s)	251, 276
AluBI	AGCT	1 cut(s)	163
AluI	AGCT	1 cut(s)	163
AlwI	GGATC	1 cut(s)	110
AoxI	GGCC	1 cut(s)	284
ApoI	RAATTY	1 cut(s)	167
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	1 cut(s)	285
AsuC2I	CCSGG	1 cut(s)	35
AsuHPI	GGTGA	1 cut(s)	109
BccI	CCATC	2 cut(s)	135, 268
BciVI	GTATCC	2 cut(s)	175, 267
BcnI	CCSGG	1 cut(s)	35
BfaI	CTAG	2 cut(s)	77, 308
BfuI	GTATCC	2 cut(s)	175, 267
Bme1390I	CCNGG	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	285
BmrFI	CCNGG	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	11
BpuMI	CCSGG	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	114
BseGI	GGATG	1 cut(s)	146
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseNI	ACTGG	1 cut(s)	114
BshFI	GGCC	1 cut(s)	286
BsiSI	CCGG	2 cut(s)	34, 179
BslI	CCNNNNNNNGG	1 cut(s)	53
BsnI	GGCC	1 cut(s)	286
Bsp143I	GATC	1 cut(s)	115
BspANI	GGCC	1 cut(s)	286
BspPI	GGATC	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	114
BssMI	GATC	1 cut(s)	115
Bst4CI	ACNGT	1 cut(s)	269
Bst6I	CTCTTC	1 cut(s)	87
BstENI	CCTNNNNNAGG	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	115
BstSCI	CCNGG	1 cut(s)	33
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
BsuI	GTATCC	2 cut(s)	175, 267
BsuRI	GGCC	1 cut(s)	286
BtsCI	GGATG	1 cut(s)	146
CfoI	GCGC	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	285
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	1 cut(s)	149
CviJI	RGCY	6 cut(s)	80, 163, 178, 195, 225, 286
CviKI_1	RGCY	6 cut(s)	80, 163, 178, 195, 225, 286
CviQI	GTAC	1 cut(s)	130
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco57I	CTGAAG	1 cut(s)	111
EcoNI	CCTNNNNNAGG	1 cut(s)	51
FaeI	CATG	1 cut(s)	152
FaiI	YATR	8 cut(s)	123, 150, 204, 265, 281, 283, 320, 337
FatI	CATG	1 cut(s)	148
FokI	GGATG	1 cut(s)	153
FspBI	CTAG	2 cut(s)	77, 308
FspI	TGCGCA	1 cut(s)	52
GlaI	GCGC	1 cut(s)	52
HaeIII	GGCC	1 cut(s)	286
HapII	CCGG	2 cut(s)	34, 179
HhaI	GCGC	1 cut(s)	53
Hin1II	CATG	1 cut(s)	152
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HinfI	GANTC	4 cut(s)	11, 57, 145, 239
HpaII	CCGG	2 cut(s)	34, 179
HphI	GGTGA	1 cut(s)	109
HpyAV	CCTTC	1 cut(s)	97
HpyCH4III	ACNGT	1 cut(s)	269
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	1 cut(s)	206
HpySE526I	ACGT	1 cut(s)	185
Hsp92II	CATG	1 cut(s)	152
HspAI	GCGC	1 cut(s)	51
Kzo9I	GATC	1 cut(s)	115
LpnPI	CCDG	7 cut(s)	39, 47, 95, 102, 149, 192, 315
MaeI	CTAG	2 cut(s)	77, 308
MaeII	ACGT	1 cut(s)	185
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MboII	GAAGA	5 cut(s)	35, 52, 104, 112, 125
MflI	RGATCY	1 cut(s)	115
MluCI	AATT	5 cut(s)	133, 167, 246, 296, 331
MlyI	GAGTC	1 cut(s)	154
MnlI	CCTC	2 cut(s)	88, 129
MseI	TTAA	3 cut(s)	72, 188, 330
MspI	CCGG	2 cut(s)	34, 179
MspR9I	CCNGG	1 cut(s)	35
NciI	CCSGG	1 cut(s)	35
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	1 cut(s)	152
NsbI	TGCGCA	1 cut(s)	52
PfeI	GAWTC	3 cut(s)	11, 57, 239
PfoI	TCCNGGA	1 cut(s)	33
PleI	GAGTC	1 cut(s)	153
PpsI	GAGTC	1 cut(s)	153
PspPI	GGNCC	1 cut(s)	285
PsuI	RGATCY	1 cut(s)	115
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SaqAI	TTAA	3 cut(s)	72, 188, 330
Sau3AI	GATC	1 cut(s)	115
Sau96I	GGNCC	1 cut(s)	285
SchI	GAGTC	1 cut(s)	154
ScrFI	CCNGG	1 cut(s)	35
SetI	ASST	6 cut(s)	78, 99, 131, 165, 188, 257
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	5 cut(s)	133, 167, 246, 296, 331
SspI	AATATT	1 cut(s)	216
SspMI	CTAG	2 cut(s)	77, 308
StyD4I	CCNGG	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	269
TaiI	ACGT	1 cut(s)	188
TasI	AATT	5 cut(s)	133, 167, 246, 296, 331
TfiI	GAWTC	3 cut(s)	11, 57, 239
Tru1I	TTAA	3 cut(s)	72, 188, 330
Tru9I	TTAA	3 cut(s)	72, 188, 330
TspDTI	ATGAA	1 cut(s)	252
XagI	CCTNNNNNAGG	1 cut(s)	51
XapI	RAATTY	1 cut(s)	167
XspI	CTAG	2 cut(s)	77, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.