Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0018025

Physical Location & Seq

Genomic Coordinates Reverse (-)

4357295 .. 4359400

Gene Structure 2106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1053400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGCCTCCGTCCTCCGACCCCGTCGTCCCCACCGTCACACCAGTCACCATATCCTACTCCGAGCTCCAAGACAGGGACAAAGATTTGTCAGTGAAGATTGAAGAAGGATTTGGACCAAATGGGTTGGGAATCCTATCAATCACTCAAGTTCCGGGATATTCTTCCTTGCGCGGGAATCTTCTAGGCTTGTCACCTAGATTAGCCAATCTGCCCGAAGAGGTGAAGAAGGAACTTGAAGATCCTCATAGTAGGTACAATTTTGGATGGAGTCATGGAAAAAGAGAAGCTGGAATCTGGAAAGCCTGGTATCCATCATACTGTGGTTCAAATATATGGCCCGATAGTGAATTGCCAGAACTAGAAGTCACCTTCAAAGCTCTTGGAAAGGTGTTCCTTGGAGTTGGGCTTATGGTCGCATATCACTGTGACAGATACGGTATGGTCTTTGTTGTTAAGGTTTACACTAAGAGAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

159

Amino Acids

17.59

Weight (kDa)

6.3

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018025)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25970
malus_domestica	MD00G1220200.v1.1 MD02G1050500.v1.1 MD02G1051000.v1.1 MD02G1052000.v1.1 MD02G1053400.v1.1 MD02G1054000.v1.1 MD02G1055000.v1.1
rosa_multiflora	Rmu_sc0003305.1_g000015
rosa_samantha	Rh2BG056500 Rh2DG058000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	23
AccII	CGCG	1 cut(s)	171
AciI	CCGC	1 cut(s)	171
AclWI	GGATC	1 cut(s)	233
AfaI	GTAC	1 cut(s)	254
AfiI	CCNNNNNNNGG	2 cut(s)	73, 171
AgsI	TTSAA	4 cut(s)	101, 236, 327, 373
AjnI	CCWGG	1 cut(s)	302
AjuI	GAANNNNNNNTTGG	2 cut(s)	93, 125
AluBI	AGCT	3 cut(s)	64, 287, 377
AluI	AGCT	3 cut(s)	64, 287, 377
Alw21I	GWGCWC	1 cut(s)	66
AlwI	GGATC	1 cut(s)	233
AoxI	GGCC	1 cut(s)	335
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	2 cut(s)	113, 336
AsuC2I	CCSGG	1 cut(s)	153
AsuHPI	GGTGA	4 cut(s)	37, 183, 232, 358
AvaII	GGWCC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	66
BccI	CCATC	2 cut(s)	258, 319
BciT130I	CCWGG	1 cut(s)	304
BciVI	GTATCC	1 cut(s)	318
BcnI	CCSGG	1 cut(s)	153
BfaI	CTAG	3 cut(s)	182, 195, 359
BfuI	GTATCC	1 cut(s)	318
Bme1390I	CCNGG	2 cut(s)	153, 304
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	2 cut(s)	113, 336
BmrFI	CCNGG	2 cut(s)	153, 304
BpuEI	CTTGAG	1 cut(s)	129
BpuMI	CCSGG	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	394
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 171
Bse1I	ACTGG	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	304
BseDI	CCNNGG	1 cut(s)	394
BseGI	GGATG	1 cut(s)	269
BseLI	CCNNNNNNNGG	2 cut(s)	73, 171
BseNI	ACTGG	1 cut(s)	41
Bsh1236I	CGCG	1 cut(s)	171
BshFI	GGCC	1 cut(s)	337
BsiHKAI	GWGCWC	1 cut(s)	66
BsiSI	CCGG	1 cut(s)	152
BslFI	GGGAC	2 cut(s)	11, 89
BslI	CCNNNNNNNGG	2 cut(s)	73, 171
BsmFI	GGGAC	2 cut(s)	11, 89
BsnI	GGCC	1 cut(s)	337
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp143I	GATC	1 cut(s)	238
BspACI	CCGC	1 cut(s)	171
BspANI	GGCC	1 cut(s)	337
BspFNI	CGCG	1 cut(s)	171
BspPI	GGATC	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	394
BssMI	GATC	1 cut(s)	238
BssT1I	CCWWGG	1 cut(s)	394
Bst2UI	CCWGG	1 cut(s)	304
Bst4CI	ACNGT	4 cut(s)	34, 320, 425, 437
Bst6I	CTCTTC	1 cut(s)	210
BstDEI	CTNAG	1 cut(s)	465
BstF5I	GGATG	1 cut(s)	269
BstFNI	CGCG	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	1 cut(s)	241
BstMBI	GATC	1 cut(s)	238
BstNI	CCWGG	1 cut(s)	304
BstSCI	CCNGG	2 cut(s)	151, 302
BstUI	CGCG	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BsuI	GTATCC	1 cut(s)	318
BsuRI	GGCC	1 cut(s)	337
BtsCI	GGATG	1 cut(s)	269
BtsIMutI	CAGTG	2 cut(s)	96, 421
CfoI	GCGC	1 cut(s)	171
Cfr13I	GGNCC	2 cut(s)	113, 336
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	1 cut(s)	272
CviJI	RGCY	8 cut(s)	64, 186, 203, 287, 302, 337, 377, 406
CviKI_1	RGCY	8 cut(s)	64, 186, 203, 287, 302, 337, 377, 406
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	1 cut(s)	465
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
DrdI	GACNNNNNNGTC	1 cut(s)	23
DseDI	GACNNNNNNGTC	1 cut(s)	23
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Ecl136II	GAGCTC	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	394
Eco24I	GRGCYC	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	113
Eco53kI	GAGCTC	1 cut(s)	64
EcoICRI	GAGCTC	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	302
EcoT14I	CCWWGG	1 cut(s)	394
EcoT38I	GRGCYC	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	394
FaeI	CATG	1 cut(s)	275
FaqI	GGGAC	2 cut(s)	11, 89
FatI	CATG	1 cut(s)	271
FauI	CCCGC	1 cut(s)	164
FokI	GGATG	1 cut(s)	276
FriOI	GRGCYC	1 cut(s)	66
FspBI	CTAG	3 cut(s)	182, 195, 359
GlaI	GCGC	1 cut(s)	170
HaeIII	GGCC	1 cut(s)	337
HapII	CCGG	1 cut(s)	152
HhaI	GCGC	1 cut(s)	171
Hin1II	CATG	1 cut(s)	275
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HinfI	GANTC	4 cut(s)	129, 175, 268, 291
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	4 cut(s)	37, 183, 232, 358
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	2 cut(s)	16, 61
Hpy188III	TCNNGA	1 cut(s)	295
Hpy8I	GTNNAC	1 cut(s)	460
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	3 cut(s)	98, 220, 379
HpyCH4III	ACNGT	4 cut(s)	34, 320, 425, 437
HpyF3I	CTNAG	1 cut(s)	465
Hsp92II	CATG	1 cut(s)	275
HspAI	GCGC	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	238
LmnI	GCTCC	1 cut(s)	69
LpnPI	CCDG	8 cut(s)	54, 58, 165, 273, 280, 289, 316, 366
MaeI	CTAG	3 cut(s)	182, 195, 359
MaeIII	GTNAC	5 cut(s)	34, 43, 189, 364, 425
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MboII	GAAGA	7 cut(s)	106, 113, 153, 170, 227, 235, 248
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	2 cut(s)	256, 347
MlyI	GAGTC	1 cut(s)	277
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	4 cut(s)	15, 22, 211, 252
MseI	TTAA	1 cut(s)	453
MspI	CCGG	1 cut(s)	152
MspR9I	CCNGG	2 cut(s)	153, 304
MvaI	CCWGG	1 cut(s)	304
MvnI	CGCG	1 cut(s)	171
NciI	CCSGG	1 cut(s)	153
NdeII	GATC	1 cut(s)	238
NlaIII	CATG	1 cut(s)	275
NmuCI	GTSAC	5 cut(s)	34, 43, 189, 364, 425
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PfeI	GAWTC	3 cut(s)	129, 175, 291
PflFI	GACNNNGTC	1 cut(s)	20
PfoI	TCCNGGA	1 cut(s)	151
PleI	GAGTC	1 cut(s)	276
PpsI	GAGTC	1 cut(s)	276
Psp124BI	GAGCTC	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	302
PspGI	CCWGG	1 cut(s)	302
PspPI	GGNCC	2 cut(s)	113, 336
PsuI	RGATCY	1 cut(s)	238
PsyI	GACNNNGTC	1 cut(s)	20
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
SacI	GAGCTC	1 cut(s)	66
SaqAI	TTAA	1 cut(s)	453
Sau3AI	GATC	1 cut(s)	238
Sau96I	GGNCC	2 cut(s)	113, 336
SchI	GAGTC	1 cut(s)	277
ScrFI	CCNGG	2 cut(s)	153, 304
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	9 cut(s)	66, 196, 222, 254, 289, 371, 379, 390, 459
SinI	GGWCC	1 cut(s)	113
SmlI	CTYRAG	1 cut(s)	144
SmoI	CTYRAG	1 cut(s)	144
Sse9I	AATT	2 cut(s)	256, 347
SsiI	CCGC	1 cut(s)	171
SspMI	CTAG	3 cut(s)	182, 195, 359
SstI	GAGCTC	1 cut(s)	66
StyD4I	CCNGG	2 cut(s)	151, 302
StyI	CCWWGG	1 cut(s)	394
TaaI	ACNGT	4 cut(s)	34, 320, 425, 437
TasI	AATT	2 cut(s)	256, 347
TfiI	GAWTC	3 cut(s)	129, 175, 291
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	2 cut(s)	96, 428
TseFI	GTSAC	5 cut(s)	34, 43, 189, 364, 425
Tsp45I	GTSAC	5 cut(s)	34, 43, 189, 364, 425
TspRI	CASTG	2 cut(s)	96, 428
Tth111I	GACNNNGTC	1 cut(s)	20
VpaK11BI	GGWCC	1 cut(s)	113
XspI	CTAG	3 cut(s)	182, 195, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.