Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0018025

Physical Location & Seq

Genomic Coordinates Reverse (-)

4269854 .. 4271321

Gene Structure 1468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1052000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCAGTAGGTTCCGGGATATTCTTCCTTGCATTAGCCAATCTGCCCGAAGAGGTGAAGAAGGAACTTGAAGATCCTCATAGTAGGTACAATTTTGGATGGAGTCATGGAAAAGAGAAGCTGGAATCTGGAAAGCCTGGTATCACTTTATGTTCTTTATACGTTAAAAGGCTCGTTTTATGCAAATCCAATATTGGAAGCCCTACAACAGATGAATCTCTAATTCAAAGGTATCCATCATACTGTGGTTCAAATATATGGCCCAATAGTGAATTGCCAGAACTAGAAGTCGCCTTCAAAGCTCTTGGAGTTGGGCTTATGGTCGCATATCACTGTGACAGATACGGTATAGTCTTTGTTGTTAAGGTTTACACTAAGAGAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

129

Amino Acids

14.27

Weight (kDa)

8.33

Isoelectric Point (pI)

32.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018025)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25970
malus_domestica	MD00G1220200.v1.1 MD02G1050500.v1.1 MD02G1051000.v1.1 MD02G1052000.v1.1 MD02G1053400.v1.1 MD02G1054000.v1.1 MD02G1055000.v1.1
rosa_multiflora	Rmu_sc0003305.1_g000015
rosa_samantha	Rh2BG056500 Rh2DG058000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	68
AfaI	GTAC	1 cut(s)	89
AgsI	TTSAA	4 cut(s)	71, 227, 252, 298
AjnI	CCWGG	1 cut(s)	136
AluBI	AGCT	2 cut(s)	121, 302
AluI	AGCT	2 cut(s)	121, 302
AlwI	GGATC	1 cut(s)	68
AoxI	GGCC	1 cut(s)	260
AspS9I	GGNCC	1 cut(s)	261
AsuC2I	CCSGG	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	67
BccI	CCATC	2 cut(s)	93, 244
BciT130I	CCWGG	1 cut(s)	138
BciVI	GTATCC	1 cut(s)	243
BcnI	CCSGG	1 cut(s)	16
BfaI	CTAG	1 cut(s)	284
BfuI	GTATCC	1 cut(s)	243
Bme1390I	CCNGG	2 cut(s)	16, 138
BmgT120I	GGNCC	1 cut(s)	261
BmiI	GGNNCC	1 cut(s)	13
BmrFI	CCNGG	2 cut(s)	16, 138
BpuMI	CCSGG	1 cut(s)	16
BseBI	CCWGG	1 cut(s)	138
BseGI	GGATG	1 cut(s)	104
BshFI	GGCC	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	15
BsnI	GGCC	1 cut(s)	262
Bsp143I	GATC	1 cut(s)	73
BspANI	GGCC	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	13
BspPI	GGATC	1 cut(s)	68
BssMI	GATC	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	3 cut(s)	245, 335, 347
Bst6I	CTCTTC	1 cut(s)	45
BstDEI	CTNAG	1 cut(s)	375
BstF5I	GGATG	1 cut(s)	104
BstKTI	GATC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstNI	CCWGG	1 cut(s)	138
BstSCI	CCNGG	2 cut(s)	14, 136
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BsuI	GTATCC	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	104
BtsIMutI	CAGTG	1 cut(s)	331
Cfr13I	GGNCC	1 cut(s)	261
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	1 cut(s)	107
CviJI	RGCY	8 cut(s)	38, 121, 136, 172, 201, 262, 302, 316
CviKI_1	RGCY	8 cut(s)	38, 121, 136, 172, 201, 262, 302, 316
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	1 cut(s)	375
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
EcoRII	CCWGG	1 cut(s)	136
FaeI	CATG	1 cut(s)	110
FatI	CATG	1 cut(s)	106
FokI	GGATG	1 cut(s)	111
FspBI	CTAG	1 cut(s)	284
HaeIII	GGCC	1 cut(s)	262
HapII	CCGG	1 cut(s)	15
Hin1II	CATG	1 cut(s)	110
HinfI	GANTC	3 cut(s)	103, 125, 215
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188III	TCNNGA	1 cut(s)	129
Hpy8I	GTNNAC	1 cut(s)	370
HpyAV	CCTTC	2 cut(s)	55, 304
HpyCH4III	ACNGT	3 cut(s)	245, 335, 347
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	2 cut(s)	32, 183
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	1 cut(s)	375
HpySE526I	ACGT	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	110
Kzo9I	GATC	1 cut(s)	73
LpnPI	CCDG	6 cut(s)	28, 107, 114, 123, 150, 291
MaeI	CTAG	1 cut(s)	284
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	4 cut(s)	16, 62, 70, 83
MflI	RGATCY	1 cut(s)	73
MluCI	AATT	3 cut(s)	91, 222, 272
MlyI	GAGTC	1 cut(s)	112
MnlI	CCTC	2 cut(s)	46, 87
MseI	TTAA	2 cut(s)	165, 363
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	2 cut(s)	16, 138
MvaI	CCWGG	1 cut(s)	138
MwoI	GCNNNNNNNGC	1 cut(s)	299
NciI	CCSGG	1 cut(s)	16
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	1 cut(s)	110
NlaIV	GGNNCC	1 cut(s)	13
NmuCI	GTSAC	1 cut(s)	335
PfeI	GAWTC	2 cut(s)	125, 215
PfoI	TCCNGGA	1 cut(s)	14
PleI	GAGTC	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	111
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
PspN4I	GGNNCC	1 cut(s)	13
PspPI	GGNCC	1 cut(s)	261
PsuI	RGATCY	1 cut(s)	73
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
SaqAI	TTAA	2 cut(s)	165, 363
Sau3AI	GATC	1 cut(s)	73
Sau96I	GGNCC	1 cut(s)	261
SchI	GAGTC	1 cut(s)	112
ScrFI	CCNGG	2 cut(s)	16, 138
SetI	ASST	8 cut(s)	13, 57, 89, 123, 165, 233, 304, 369
Sse9I	AATT	3 cut(s)	91, 222, 272
SspI	AATATT	1 cut(s)	193
SspMI	CTAG	1 cut(s)	284
StyD4I	CCNGG	2 cut(s)	14, 136
TaaI	ACNGT	3 cut(s)	245, 335, 347
TaiI	ACGT	1 cut(s)	165
TasI	AATT	3 cut(s)	91, 222, 272
TfiI	GAWTC	2 cut(s)	125, 215
Tru1I	TTAA	2 cut(s)	165, 363
Tru9I	TTAA	2 cut(s)	165, 363
TscAI	CASTG	1 cut(s)	338
TseFI	GTSAC	1 cut(s)	335
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	1 cut(s)	228
TspRI	CASTG	1 cut(s)	338
XspI	CTAG	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.