FvH4_4g26250

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0016316
Physical Location & Seq
Forward (+)
27718158 .. 27720252
2095 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g26250.t1

Sequence Viewer

Length: 1014 bp
ATGGCACCCAAAACCCGGCAACGCCGGCGGTACTTGAGGATTAATAGGCCTAGAGAACCAAAGAAACAAACCCTATCAAACAGCCGGAACTGGATTGATCTTCCAGACGACATCACGGCTTCGATTCTGTCACGTCTGTCAATGTTCGATATCCTTGAGAGAGCTCAGATGGTGTGCCTGACATGGCGCCGGATCTGCAAGGACCCTCTGACGTGGCGCACCATCCGCATGGAGTTCGATATTCATCTCCCCCAAGAAAAGGTCAATGGAAATTTCACTTCAGACAAAAGAGAAAAGCATCTGCGCAAGTCATTCAGTGCACATAAGATGTGCCGCCACGCCATTCATCTTAGCTTTGGCAATCTCGTCGATATCAGCATCCGGAACTGTGGCACAGATGAGCTCCATCAGCATATGACTGACAGCTCGAGGGGAATCAGACGCCTCAGTATTGTGTTTTCAGCTCACATAACAATGAAGGGACTGAGTAAAGTGGCTTTGAAGATTCCGCTGTTGGAGGATCTTGAAATCTCATACATCCCAAAGAGTTGTAACCCTTTCGAACGATACCCTTACAAAGAACACGAATCTCTTCAAGTGATTGGCCATTCTTGCCCTCTTTTGAAATCATTGAGATGGAACAAGCATGAAGGGGATATTTTCACATTCAGTGACAATTGTGATGCATTTGCGATAGCCAGAACAATGCATGGCTTACAGAATCTCCAGCTTTTTGGAAATTGGCTGAGCCATCAGGGTTTACACGACATTCTTGAAGGTTGTCCGCGTCTTGAATCACTTGATCTCCGTGAATGTATACATCTTCGTCCTTCAAAGCAATGGGGTTGGCGCGTCAAAGGTCGTTCACATCTTGAAGATTTGAGGACAAGATGTTTTGAACGAATTAAGAATCTGAGGCTTCCTGAGGACTCTACAGATGATTATGAGCATATTGTCATTCATGGAATTGTTAACACAGAATACTGGGAATATATGAAAGATGTGATGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

338

Amino Acids

39.84

Weight (kDa)

9.21

Isoelectric Point (pI)

52.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 31 - 76 5.6e-09 F-box-like
F-box PF00646 31 - 73 1.3e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016316)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g26250 FvH4_5g19531
rosa_chinensis RchiOBHm_Chr5g0015241
rosa_laevigata RLG00000032180
rosa_multiflora Rmu_sc0002209.1_g000024
rosa_roxburghii Rroxscaffold_1G00061330
rosa_rugosa Rorug05G0024900
rosa_samantha Rh5AG119400 Rh5AG119500 Rh5BG117500 Rh5BG118300 Rh5CG128600 Rh5DG116600 Rh5DG116900
rosa_wichuraiana Rw5G010320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 305
AccB1I GGYRCC 2 cut(s) 4, 186
AccI GTMKAC 1 cut(s) 817
AccII CGCG 2 cut(s) 787, 852
AccIII TCCGGA 1 cut(s) 381
AciI CCGC 5 cut(s) 28, 226, 334, 509, 785
AclWI GGATC 2 cut(s) 200, 528
AcoI YGGCCR 1 cut(s) 604
AcsI RAATTY 1 cut(s) 271
AcuI CTGAAG 1 cut(s) 264
AcyI GRCGYC 2 cut(s) 187, 442
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 2 cut(s) 15, 259
AgsI TTSAA 9 cut(s) 502, 527, 596, 625, 776, 794, 834, 875, 899
AjiI CACGTC 2 cut(s) 134, 213
AluBI AGCT 6 cut(s) 164, 354, 403, 426, 464, 730
AluI AGCT 6 cut(s) 164, 354, 403, 426, 464, 730
Alw21I GWGCWC 3 cut(s) 166, 322, 405
Alw44I GTGCAC 1 cut(s) 318
AlwI GGATC 2 cut(s) 200, 528
Ama87I CYCGRG 1 cut(s) 427
Aor13HI TCCGGA 1 cut(s) 381
AoxI GGCC 2 cut(s) 47, 604
ApaLI GTGCAC 1 cut(s) 318
ApoI RAATTY 1 cut(s) 271
AseI ATTAAT 1 cut(s) 42
Asp700I GAANNNNTTC 1 cut(s) 591
AspLEI GCGC 4 cut(s) 189, 219, 306, 852
AspS9I GGNCC 1 cut(s) 202
AsuC2I CCSGG 1 cut(s) 16
AsuII TTCGAA 1 cut(s) 561
AvaI CYCGRG 1 cut(s) 427
AvaII GGWCC 1 cut(s) 202
AxyI CCTNAGG 1 cut(s) 924
BaeGI GKGCMC 1 cut(s) 322
BalI TGGCCA 1 cut(s) 606
BanI GGYRCC 2 cut(s) 4, 186
BanII GRGCYC 2 cut(s) 166, 405
Bbv12I GWGCWC 3 cut(s) 166, 322, 405
BccI CCATC 5 cut(s) 163, 230, 414, 630, 759
BceAI ACGGC 1 cut(s) 132
BcgI CGANNNNNNTGC 4 cut(s) 217, 251, 349, 383
BcnI CCSGG 1 cut(s) 16
BfaI CTAG 2 cut(s) 51, 1012
BfmI CTRYAG 1 cut(s) 933
BfoI RGCGCY 1 cut(s) 190
BisI GCNGC 1 cut(s) 334
BlpI GCTNAGC 1 cut(s) 746
BlsI GCNGC 1 cut(s) 335
Bme1390I CCNGG 1 cut(s) 16
Bme18I GGWCC 1 cut(s) 202
BmeT110I CYCGRG 1 cut(s) 427
BmgBI CACGTC 2 cut(s) 134, 213
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 3 cut(s) 6, 188, 204
BmrFI CCNGG 1 cut(s) 16
BmrI ACTGGG 1 cut(s) 994
BmsI GCATC 3 cut(s) 307, 387, 673
BmuI ACTGGG 1 cut(s) 994
BpmI CTGGAG 1 cut(s) 710
Bpu1102I GCTNAGC 1 cut(s) 746
Bpu14I TTCGAA 1 cut(s) 561
BpuEI CTTGAG 2 cut(s) 55, 176
BpuMI CCSGG 1 cut(s) 16
BsaBI GATNNNNATC 1 cut(s) 243
BsaHI GRCGYC 2 cut(s) 187, 442
BsaWI WCCGGW 1 cut(s) 381
BsaXI ACNNNNNCTCC 4 cut(s) 708, 738, 789, 819
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 259
Bse118I RCCGGY 1 cut(s) 24
Bse1I ACTGG 2 cut(s) 95, 989
Bse21I CCTNAGG 1 cut(s) 924
Bse3DI GCAATG 1 cut(s) 845
Bse8I GATNNNNATC 1 cut(s) 243
BseAI TCCGGA 1 cut(s) 381
BseGI GGATG 3 cut(s) 222, 378, 537
BseJI GATNNNNATC 1 cut(s) 243
BseLI CCNNNNNNNGG 2 cut(s) 15, 259
BseMI GCAATG 1 cut(s) 845
BseMII CTCAG 6 cut(s) 179, 460, 476, 737, 905, 915
BseNI ACTGG 2 cut(s) 95, 989
BseSI GKGCMC 1 cut(s) 322
Bsh1236I CGCG 2 cut(s) 787, 852
BshFI GGCC 2 cut(s) 49, 606
BshNI GGYRCC 2 cut(s) 4, 186
BsiHKAI GWGCWC 3 cut(s) 166, 322, 405
BsiHKCI CYCGRG 1 cut(s) 427
BsiSI CCGG 5 cut(s) 16, 25, 85, 190, 382
BslFI GGGAC 1 cut(s) 495
BslI CCNNNNNNNGG 2 cut(s) 15, 259
BsmFI GGGAC 1 cut(s) 495
BsnI GGCC 2 cut(s) 49, 606
BsoBI CYCGRG 1 cut(s) 427
Bsp119I TTCGAA 1 cut(s) 561
Bsp1286I GDGCHC 3 cut(s) 166, 322, 405
Bsp13I TCCGGA 1 cut(s) 381
Bsp143I GATC 5 cut(s) 97, 192, 520, 802, 1008
Bsp1720I GCTNAGC 1 cut(s) 746
BspACI CCGC 5 cut(s) 28, 226, 334, 509, 785
BspANI GGCC 2 cut(s) 49, 606
BspCNI CTCAG 6 cut(s) 178, 459, 477, 738, 906, 916
BspEI TCCGGA 1 cut(s) 381
BspFNI CGCG 2 cut(s) 787, 852
BspLI GGNNCC 3 cut(s) 6, 188, 204
BspPI GGATC 2 cut(s) 200, 528
BspT104I TTCGAA 1 cut(s) 561
BspT107I GGYRCC 2 cut(s) 4, 186
BsrDI GCAATG 1 cut(s) 845
BsrFI RCCGGY 1 cut(s) 24
BsrI ACTGG 2 cut(s) 95, 989
BssAI RCCGGY 1 cut(s) 24
BssMI GATC 5 cut(s) 97, 192, 520, 802, 1008
BssNAI GTATAC 1 cut(s) 818
BssNI GRCGYC 2 cut(s) 187, 442
Bst1107I GTATAC 1 cut(s) 818
Bst4CI ACNGT 1 cut(s) 389
Bst6I CTCTTC 1 cut(s) 597
BstACI GRCGYC 2 cut(s) 187, 442
BstBI TTCGAA 1 cut(s) 561
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 7 cut(s) 165, 350, 446, 485, 746, 914, 924
BstF5I GGATG 3 cut(s) 222, 378, 537
BstFNI CGCG 2 cut(s) 787, 852
BstH2I RGCGCY 1 cut(s) 190
BstHHI GCGC 4 cut(s) 189, 219, 306, 852
BstKTI GATC 5 cut(s) 100, 195, 523, 805, 1011
BstMBI GATC 5 cut(s) 97, 192, 520, 802, 1008
BstMWI GCNNNNNNNGC 5 cut(s) 25, 195, 225, 409, 612
BstSCI CCNGG 1 cut(s) 14
BstSFI CTRYAG 1 cut(s) 933
BstSLI GKGCMC 1 cut(s) 322
BstUI CGCG 2 cut(s) 787, 852
BstX2I RGATCY 2 cut(s) 192, 520
BstXI CCANNNNNNTGG 2 cut(s) 229, 734
BstYI RGATCY 2 cut(s) 192, 520
BstZ17I GTATAC 1 cut(s) 818
Bsu36I CCTNAGG 1 cut(s) 924
BsuRI GGCC 2 cut(s) 49, 606
BtrI CACGTC 2 cut(s) 134, 213
BtsCI GGATG 3 cut(s) 222, 378, 537
BtsIMutI CAGTG 2 cut(s) 322, 676
Cac8I GCNNGC 1 cut(s) 26
CfoI GCGC 4 cut(s) 189, 219, 306, 852
Cfr10I RCCGGY 1 cut(s) 24
Cfr13I GGNCC 1 cut(s) 202
CseI GACGC 3 cut(s) 450, 776, 841
Csp6I GTAC 1 cut(s) 31
CviAII CATG 5 cut(s) 183, 229, 647, 710, 962
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 7 cut(s) 165, 350, 446, 485, 746, 914, 924
DinI GGCGCC 1 cut(s) 188
DpnI GATC 5 cut(s) 99, 194, 522, 804, 1010
DpnII GATC 5 cut(s) 97, 192, 520, 802, 1008
EaeI YGGCCR 1 cut(s) 604
Eam1104I CTCTTC 1 cut(s) 597
EarI CTCTTC 1 cut(s) 597
Ecl136II GAGCTC 2 cut(s) 164, 403
Eco147I AGGCCT 1 cut(s) 49
Eco24I GRGCYC 2 cut(s) 166, 405
Eco32I GATATC 2 cut(s) 151, 373
Eco47I GGWCC 1 cut(s) 202
Eco53kI GAGCTC 2 cut(s) 164, 403
Eco57I CTGAAG 1 cut(s) 264
Eco81I CCTNAGG 1 cut(s) 924
Eco88I CYCGRG 1 cut(s) 427
EcoICRI GAGCTC 2 cut(s) 164, 403
EcoO109I RGGNCCY 1 cut(s) 202
EcoRV GATATC 2 cut(s) 151, 373
EcoT22I ATGCAT 2 cut(s) 688, 711
EcoT38I GRGCYC 2 cut(s) 166, 405
EgeI GGCGCC 1 cut(s) 188
EheI GGCGCC 1 cut(s) 188
FaeI CATG 5 cut(s) 186, 232, 650, 713, 965
FaqI GGGAC 1 cut(s) 495
FatI CATG 5 cut(s) 182, 228, 646, 709, 961
FauNDI CATATG 1 cut(s) 414
FblI GTMKAC 1 cut(s) 817
Fnu4HI GCNGC 1 cut(s) 334
FokI GGATG 3 cut(s) 209, 365, 524
FriOI GRGCYC 2 cut(s) 166, 405
Fsp4HI GCNGC 1 cut(s) 334
FspBI CTAG 2 cut(s) 51, 1012
FspI TGCGCA 1 cut(s) 305
GlaI GCGC 4 cut(s) 188, 218, 305, 851
GluI GCNGC 1 cut(s) 334
GsuI CTGGAG 1 cut(s) 710
HaeII RGCGCY 1 cut(s) 190
HaeIII GGCC 2 cut(s) 49, 606
HapII CCGG 5 cut(s) 16, 25, 85, 190, 382
HgaI GACGC 3 cut(s) 450, 776, 841
HhaI GCGC 4 cut(s) 189, 219, 306, 852
Hin1I GRCGYC 2 cut(s) 187, 442
Hin1II CATG 5 cut(s) 186, 232, 650, 713, 965
Hin6I GCGC 4 cut(s) 187, 217, 304, 850
HinP1I GCGC 4 cut(s) 187, 217, 304, 850
HincII GTYRAC 1 cut(s) 973
HindII GTYRAC 1 cut(s) 973
HinfI GANTC 8 cut(s) 124, 435, 505, 587, 721, 794, 910, 929
HpaI GTTAAC 1 cut(s) 973
HpaII CCGG 5 cut(s) 16, 25, 85, 190, 382
Hpy166II GTNNAC 5 cut(s) 320, 761, 818, 866, 973
Hpy188I TCNGA 5 cut(s) 168, 210, 283, 440, 915
Hpy188III TCNNGA 7 cut(s) 104, 382, 524, 773, 791, 872, 923
Hpy8I GTNNAC 5 cut(s) 320, 761, 818, 866, 973
Hpy99I CGWCG 1 cut(s) 371
HpyAV CCTTC 4 cut(s) 472, 644, 770, 840
HpyCH4III ACNGT 1 cut(s) 389
HpyCH4IV ACGT 2 cut(s) 133, 212
HpyCH4V TGCA 4 cut(s) 198, 320, 686, 709
HpyF10VI GCNNNNNNNGC 5 cut(s) 25, 195, 225, 409, 612
HpyF3I CTNAG 7 cut(s) 165, 350, 446, 485, 746, 914, 924
HpySE526I ACGT 2 cut(s) 133, 212
Hsp92I GRCGYC 2 cut(s) 187, 442
Hsp92II CATG 5 cut(s) 186, 232, 650, 713, 965
HspAI GCGC 4 cut(s) 187, 217, 304, 850
KasI GGCGCC 1 cut(s) 186
Kpn2I TCCGGA 1 cut(s) 381
KroI GCCGGC 1 cut(s) 24
KroNI GCCGGC 1 cut(s) 26
KspAI GTTAAC 1 cut(s) 973
Kzo9I GATC 5 cut(s) 97, 192, 520, 802, 1008
LmnI GCTCC 1 cut(s) 408
LweI GCATC 3 cut(s) 307, 387, 673
MaeI CTAG 2 cut(s) 51, 1012
MaeII ACGT 2 cut(s) 133, 212
MaeIII GTNAC 3 cut(s) 129, 551, 671
MalI GATC 5 cut(s) 99, 194, 522, 804, 1010
MboI GATC 5 cut(s) 97, 192, 520, 802, 1008
MboII GAAGA 5 cut(s) 92, 514, 584, 815, 887
MfeI CAATTG 1 cut(s) 676
MflI RGATCY 2 cut(s) 192, 520
MhlI GDGCHC 3 cut(s) 166, 322, 405
MlsI TGGCCA 1 cut(s) 606
MluCI AATT 5 cut(s) 271, 676, 739, 903, 966
MluNI TGGCCA 1 cut(s) 606
Mly113I GGCGCC 1 cut(s) 187
MlyI GAGTC 1 cut(s) 923
MmeI TCCRAC 1 cut(s) 495
MnlI CCTC 9 cut(s) 30, 216, 423, 455, 511, 627, 876, 909, 919
Mox20I TGGCCA 1 cut(s) 606
Mph1103I ATGCAT 2 cut(s) 688, 711
MreI CGCCGGCG 1 cut(s) 24
MroI TCCGGA 1 cut(s) 381
MroNI GCCGGC 1 cut(s) 24
MroXI GAANNNNTTC 1 cut(s) 591
MscI TGGCCA 1 cut(s) 606
MseI TTAA 3 cut(s) 42, 906, 972
MslI CAYNNNNRTG 3 cut(s) 227, 473, 634
Msp20I TGGCCA 1 cut(s) 606
MspA1I CMGCKG 1 cut(s) 511
MspI CCGG 5 cut(s) 16, 25, 85, 190, 382
MspR9I CCNGG 1 cut(s) 16
MunI CAATTG 1 cut(s) 676
MvnI CGCG 2 cut(s) 787, 852
MwoI GCNNNNNNNGC 5 cut(s) 25, 195, 225, 409, 612
NaeI GCCGGC 1 cut(s) 26
NarI GGCGCC 1 cut(s) 187
NciI CCSGG 1 cut(s) 16
NdeI CATATG 1 cut(s) 414
NdeII GATC 5 cut(s) 97, 192, 520, 802, 1008
NgoMIV GCCGGC 1 cut(s) 24
NlaIII CATG 5 cut(s) 186, 232, 650, 713, 965
NlaIV GGNNCC 3 cut(s) 6, 188, 204
NmuCI GTSAC 2 cut(s) 129, 671
NsbI TGCGCA 1 cut(s) 305
NsiI ATGCAT 2 cut(s) 688, 711
NspV TTCGAA 1 cut(s) 561
PaeR7I CTCGAG 1 cut(s) 427
PceI AGGCCT 1 cut(s) 49
PdiI GCCGGC 1 cut(s) 26
PdmI GAANNNNTTC 1 cut(s) 591
PfeI GAWTC 7 cut(s) 124, 435, 505, 587, 721, 794, 910
PkrI GCNGC 1 cut(s) 335
PleI GAGTC 1 cut(s) 923
PluTI GGCGCC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 923
PpuMI RGGWCCY 1 cut(s) 202
PshBI ATTAAT 1 cut(s) 42
Psp124BI GAGCTC 2 cut(s) 166, 405
Psp5II RGGWCCY 1 cut(s) 202
PspN4I GGNNCC 3 cut(s) 6, 188, 204
PspPI GGNCC 1 cut(s) 202
PspPPI RGGWCCY 1 cut(s) 202
PspXI VCTCGAGB 1 cut(s) 427
PsuI RGATCY 2 cut(s) 192, 520
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
RseI CAYNNNNRTG 3 cut(s) 227, 473, 634
SacI GAGCTC 2 cut(s) 166, 405
SaqAI TTAA 3 cut(s) 42, 906, 972
SatI GCNGC 1 cut(s) 334
Sau3AI GATC 5 cut(s) 97, 192, 520, 802, 1008
Sau96I GGNCC 1 cut(s) 202
SchI GAGTC 1 cut(s) 923
ScrFI CCNGG 1 cut(s) 16
SduI GDGCHC 3 cut(s) 166, 322, 405
SfaNI GCATC 3 cut(s) 307, 387, 673
SfcI CTRYAG 1 cut(s) 933
SfoI GGCGCC 1 cut(s) 188
Sfr274I CTCGAG 1 cut(s) 427
SfuI TTCGAA 1 cut(s) 561
SgrAI CRCCGGYG 1 cut(s) 24
SinI GGWCC 1 cut(s) 202
SlaI CTCGAG 1 cut(s) 427
SmiMI CAYNNNNRTG 3 cut(s) 227, 473, 634
SmlI CTYRAG 3 cut(s) 34, 155, 427
SmoI CTYRAG 3 cut(s) 34, 155, 427
Sse9I AATT 5 cut(s) 271, 676, 739, 903, 966
SseBI AGGCCT 1 cut(s) 49
SsiI CCGC 5 cut(s) 28, 226, 334, 509, 785
SspDI GGCGCC 1 cut(s) 186
SspMI CTAG 2 cut(s) 51, 1012
SstI GAGCTC 2 cut(s) 166, 405
StuI AGGCCT 1 cut(s) 49
StyD4I CCNGG 1 cut(s) 14
TaaI ACNGT 1 cut(s) 389
TaiI ACGT 2 cut(s) 136, 215
TaqI TCGA 6 cut(s) 122, 147, 237, 369, 428, 561
TasI AATT 5 cut(s) 271, 676, 739, 903, 966
TauI GCSGC 1 cut(s) 336
TfiI GAWTC 7 cut(s) 124, 435, 505, 587, 721, 794, 910
Tru1I TTAA 3 cut(s) 42, 906, 972
Tru9I TTAA 3 cut(s) 42, 906, 972
TscAI CASTG 2 cut(s) 322, 676
TseFI GTSAC 2 cut(s) 129, 671
Tsp45I GTSAC 2 cut(s) 129, 671
TspDTI ATGAA 6 cut(s) 233, 335, 491, 663, 950, 1010
TspGWI ACGGA 1 cut(s) 797
TspRI CASTG 2 cut(s) 322, 676
VneI GTGCAC 1 cut(s) 318
VpaK11BI GGWCC 1 cut(s) 202
VspI ATTAAT 1 cut(s) 42
XapI RAATTY 1 cut(s) 271
XhoI CTCGAG 1 cut(s) 427
XmiI GTMKAC 1 cut(s) 817
XmnI GAANNNNTTC 1 cut(s) 591
XspI CTAG 2 cut(s) 51, 1012
Zsp2I ATGCAT 2 cut(s) 688, 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.