Rmu_sc0002209.1_g000024

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002209.1
OG0016316
Physical Location & Seq
Forward (+)
90925 .. 93159
2235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002209.1_g000024.1.cds

Sequence Viewer

Length: 1050 bp
atggccgagtcctcaaacaaaacctggcgacgccggcggaacgtgactaggcctagaaaagcaaaaaaacaaaccctaccggcgttatcagagtcagaatcactgcgaggacgcccgaactggattgaccttccggacgacgtcaccgcttcgattctttcacggctgtcaatgttcgacatcctggagagggctcagaaggtgtgcctgacgtggcgcagaatctgtaaggaccctatgacttggcgcgccatccacatggagttccatattcatctgcgtcaacaaaaaattaaaggaaatttcacttccgccaaaagaaaaaagcatctgcgcaaattccacaacttcaatgtacataagatgtgccaccacgccattgatcttagctgtggcaatctcgtagatatcagtatccggaactgtggcacagatgagctccttgagcatatgactgataggggaatcagacgcatcagtattgtgttttcagcttacataacaatgaagggactaagtaaagtggcttcgaagcttccgatgttggaggatcttgcaatctcatacaccccacggattagtaaaagtttcggagtcttacacagttgtgaatatcttgaagtgattggccgttcttgccctcttttgaaatctttgaaattgaacaagcaccccggggatatgtttaacagaaaagacaatggtgatgcatttgcgatagccagaacaatgcatgggttaaagaacttgcagctttttggaaattggatgaatcatcagggattgcacgccattcttgtaggttgtccgcatcttgagtcacttgatctccgtcaatgtacacatctttatctgaatagtaagggatggggatggcgcgccattcatgaaggttgttcatcacatcttcaagatttgacaagaagatgttttgaacaaattacaaaactgtggcttcctgacgattctgtacatgactatgagcatcttgccattgataaaattgaaaacagacaatacgaagcgtatactgaagatatgatgatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

349

Amino Acids

40.61

Weight (kDa)

9.49

Isoelectric Point (pI)

47.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016316)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g26250 FvH4_5g19531
rosa_chinensis RchiOBHm_Chr5g0015241
rosa_laevigata RLG00000032180
rosa_multiflora Rmu_sc0002209.1_g000024
rosa_roxburghii Rroxscaffold_1G00061330
rosa_rugosa Rorug05G0024900
rosa_samantha Rh5AG119400 Rh5AG119500 Rh5BG117500 Rh5BG118300 Rh5CG128600 Rh5DG116600 Rh5DG116900
rosa_wichuraiana Rw5G010320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 144
Acc16I TGCGCA 1 cut(s) 335
AccI GTMKAC 1 cut(s) 1028
AccII CGCG 2 cut(s) 249, 879
AccIII TCCGGA 2 cut(s) 133, 417
AciI CCGC 4 cut(s) 37, 147, 312, 809
AclWI GGATC 1 cut(s) 558
AcoI YGGCCR 2 cut(s) 3, 628
AcsI RAATTY 2 cut(s) 301, 338
AcyI GRCGYC 3 cut(s) 31, 112, 141
AfaI GTAC 3 cut(s) 357, 841, 972
AfiI CCNNNNNNNGG 1 cut(s) 190
AgsI TTSAA 8 cut(s) 352, 620, 649, 658, 664, 911, 935, 1007
AjiI CACGTC 1 cut(s) 213
AjnI CCWGG 2 cut(s) 23, 183
AleI CACNNNNGTG 1 cut(s) 606
AluBI AGCT 5 cut(s) 390, 439, 494, 535, 754
AluI AGCT 5 cut(s) 390, 439, 494, 535, 754
Alw21I GWGCWC 1 cut(s) 441
AlwI GGATC 1 cut(s) 558
AlwNI CAGNNNCTG 1 cut(s) 225
Ama87I CYCGRG 1 cut(s) 674
Aor13HI TCCGGA 2 cut(s) 133, 417
AoxI GGCC 3 cut(s) 3, 50, 628
ApeKI GCWGC 1 cut(s) 751
ApoI RAATTY 2 cut(s) 301, 338
AscI GGCGCGCC 2 cut(s) 247, 877
AspLEI GCGC 6 cut(s) 219, 249, 251, 336, 879, 881
AspS9I GGNCC 1 cut(s) 232
AsuC2I CCSGG 2 cut(s) 675, 676
AsuHPI GGTGA 2 cut(s) 136, 716
AsuII TTCGAA 1 cut(s) 530
AvaI CYCGRG 1 cut(s) 674
AvaII GGWCC 1 cut(s) 232
BanII GRGCYC 2 cut(s) 196, 441
BarI GAAGNNNNNNTAC 2 cut(s) 511, 543
Bbv12I GWGCWC 1 cut(s) 441
BbvI GCAGC 1 cut(s) 763
BccI CCATC 3 cut(s) 260, 861, 867
BceAI ACGGC 2 cut(s) 179, 615
BciT130I CCWGG 2 cut(s) 25, 185
BciVI GTATCC 1 cut(s) 425
BcnI CCSGG 2 cut(s) 675, 676
BfaI CTAG 3 cut(s) 48, 54, 1048
BfuI GTATCC 1 cut(s) 425
BisI GCNGC 1 cut(s) 752
BlsI GCNGC 1 cut(s) 753
Bme1390I CCNGG 4 cut(s) 25, 185, 675, 676
Bme18I GGWCC 1 cut(s) 232
BmeT110I CYCGRG 1 cut(s) 674
BmgBI CACGTC 1 cut(s) 213
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 1 cut(s) 234
BmrFI CCNGG 4 cut(s) 25, 185, 675, 676
BmsI GCATC 5 cut(s) 337, 483, 697, 820, 994
BpmI CTGGAG 1 cut(s) 206
Bpu14I TTCGAA 1 cut(s) 530
BpuEI CTTGAG 2 cut(s) 464, 836
BpuMI CCSGG 2 cut(s) 675, 676
BsaHI GRCGYC 3 cut(s) 31, 112, 141
BsaJI CCNNGG 4 cut(s) 572, 673, 674, 675
BsaWI WCCGGW 2 cut(s) 133, 417
BsaXI ACNNNNNCTCC 2 cut(s) 813, 843
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse118I RCCGGY 2 cut(s) 33, 79
Bse1I ACTGG 1 cut(s) 125
BseAI TCCGGA 2 cut(s) 133, 417
BseBI CCWGG 2 cut(s) 25, 185
BseDI CCNNGG 4 cut(s) 572, 673, 674, 675
BseGI GGATG 5 cut(s) 180, 252, 774, 872, 878
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMII CTCAG 1 cut(s) 209
BseNI ACTGG 1 cut(s) 125
BsePI GCGCGC 2 cut(s) 247, 877
BseXI GCAGC 1 cut(s) 763
Bsh1236I CGCG 2 cut(s) 249, 879
BshFI GGCC 3 cut(s) 5, 52, 630
BsiHKAI GWGCWC 1 cut(s) 441
BsiHKCI CYCGRG 1 cut(s) 674
BsiSI CCGG 5 cut(s) 34, 80, 134, 418, 675
BslFI GGGAC 1 cut(s) 525
BslI CCNNNNNNNGG 1 cut(s) 190
BsmFI GGGAC 1 cut(s) 525
BsnI GGCC 3 cut(s) 5, 52, 630
BsoBI CYCGRG 1 cut(s) 674
Bsp119I TTCGAA 1 cut(s) 530
Bsp1286I GDGCHC 2 cut(s) 196, 441
Bsp13I TCCGGA 2 cut(s) 133, 417
Bsp1407I TGTACA 3 cut(s) 355, 839, 970
Bsp143I GATC 4 cut(s) 382, 550, 826, 1044
BspACI CCGC 4 cut(s) 37, 147, 312, 809
BspANI GGCC 3 cut(s) 5, 52, 630
BspCNI CTCAG 1 cut(s) 208
BspEI TCCGGA 2 cut(s) 133, 417
BspFNI CGCG 2 cut(s) 249, 879
BspHI TCATGA 1 cut(s) 886
BspLI GGNNCC 1 cut(s) 234
BspPI GGATC 1 cut(s) 558
BspT104I TTCGAA 1 cut(s) 530
BsrFI RCCGGY 2 cut(s) 33, 79
BsrGI TGTACA 3 cut(s) 355, 839, 970
BsrI ACTGG 1 cut(s) 125
BssAI RCCGGY 2 cut(s) 33, 79
BssECI CCNNGG 4 cut(s) 572, 673, 674, 675
BssHII GCGCGC 2 cut(s) 247, 877
BssMI GATC 4 cut(s) 382, 550, 826, 1044
BssNAI GTATAC 1 cut(s) 1029
BssNI GRCGYC 3 cut(s) 31, 112, 141
Bst1107I GTATAC 1 cut(s) 1029
Bst2UI CCWGG 2 cut(s) 25, 185
Bst4CI ACNGT 3 cut(s) 425, 605, 951
BstACI GRCGYC 3 cut(s) 31, 112, 141
BstAUI TGTACA 3 cut(s) 355, 839, 970
BstBI TTCGAA 1 cut(s) 530
BstC8I GCNNGC 4 cut(s) 35, 249, 789, 879
BstDEI CTNAG 3 cut(s) 195, 386, 515
BstDSI CCRYGG 1 cut(s) 572
BstF5I GGATG 5 cut(s) 180, 252, 774, 872, 878
BstFNI CGCG 2 cut(s) 249, 879
BstHHI GCGC 6 cut(s) 219, 249, 251, 336, 879, 881
BstKTI GATC 4 cut(s) 385, 553, 829, 1047
BstMBI GATC 4 cut(s) 382, 550, 826, 1044
BstMWI GCNNNNNNNGC 3 cut(s) 34, 445, 636
BstNI CCWGG 2 cut(s) 25, 185
BstSCI CCNGG 4 cut(s) 23, 183, 673, 674
BstUI CGCG 2 cut(s) 249, 879
BstV1I GCAGC 1 cut(s) 763
BstX2I RGATCY 1 cut(s) 550
BstXI CCANNNNNNTGG 1 cut(s) 259
BstYI RGATCY 1 cut(s) 550
BstZ17I GTATAC 1 cut(s) 1029
BsuI GTATCC 1 cut(s) 425
BsuRI GGCC 3 cut(s) 5, 52, 630
BtgI CCRYGG 1 cut(s) 572
BtrI CACGTC 1 cut(s) 213
BtsCI GGATG 5 cut(s) 180, 252, 774, 872, 878
BtsI GCAGTG 1 cut(s) 101
BtsIMutI CAGTG 1 cut(s) 101
Cac8I GCNNGC 4 cut(s) 35, 249, 789, 879
CaiI CAGNNNCTG 1 cut(s) 225
CciI TCATGA 1 cut(s) 886
CfoI GCGC 6 cut(s) 219, 249, 251, 336, 879, 881
Cfr10I RCCGGY 2 cut(s) 33, 79
Cfr13I GGNCC 1 cut(s) 232
Cfr9I CCCGGG 1 cut(s) 674
CseI GACGC 4 cut(s) 39, 120, 269, 480
Csp6I GTAC 3 cut(s) 356, 840, 971
CviAII CATG 4 cut(s) 259, 734, 887, 974
CviQI GTAC 3 cut(s) 356, 840, 971
DdeI CTNAG 3 cut(s) 195, 386, 515
DpnI GATC 4 cut(s) 384, 552, 828, 1046
DpnII GATC 4 cut(s) 382, 550, 826, 1044
EaeI YGGCCR 2 cut(s) 3, 628
EciI GGCGGA 2 cut(s) 52, 301
Ecl136II GAGCTC 1 cut(s) 439
Eco147I AGGCCT 1 cut(s) 52
Eco24I GRGCYC 2 cut(s) 196, 441
Eco32I GATATC 1 cut(s) 409
Eco47I GGWCC 1 cut(s) 232
Eco53kI GAGCTC 1 cut(s) 439
Eco88I CYCGRG 1 cut(s) 674
EcoICRI GAGCTC 1 cut(s) 439
EcoO109I RGGNCCY 1 cut(s) 232
EcoRII CCWGG 2 cut(s) 23, 183
EcoRV GATATC 1 cut(s) 409
EcoT22I ATGCAT 2 cut(s) 712, 735
EcoT38I GRGCYC 2 cut(s) 196, 441
FaeI CATG 4 cut(s) 262, 737, 890, 977
FaqI GGGAC 1 cut(s) 525
FatI CATG 4 cut(s) 258, 733, 886, 973
FauNDI CATATG 1 cut(s) 450
FblI GTMKAC 1 cut(s) 1028
Fnu4HI GCNGC 1 cut(s) 752
FokI GGATG 5 cut(s) 167, 239, 781, 879, 885
FriOI GRGCYC 2 cut(s) 196, 441
Fsp4HI GCNGC 1 cut(s) 752
FspBI CTAG 3 cut(s) 48, 54, 1048
FspI TGCGCA 1 cut(s) 335
GlaI GCGC 6 cut(s) 218, 248, 250, 335, 878, 880
GluI GCNGC 1 cut(s) 752
GsuI CTGGAG 1 cut(s) 206
HaeIII GGCC 3 cut(s) 5, 52, 630
HapII CCGG 5 cut(s) 34, 80, 134, 418, 675
HgaI GACGC 4 cut(s) 39, 120, 269, 480
HhaI GCGC 6 cut(s) 219, 249, 251, 336, 879, 881
Hin1I GRCGYC 3 cut(s) 31, 112, 141
Hin1II CATG 4 cut(s) 262, 737, 890, 977
Hin6I GCGC 6 cut(s) 217, 247, 249, 334, 877, 879
HinP1I GCGC 6 cut(s) 217, 247, 249, 334, 877, 879
HincII GTYRAC 1 cut(s) 284
HindII GTYRAC 1 cut(s) 284
HindIII AAGCTT 1 cut(s) 533
HpaII CCGG 5 cut(s) 34, 80, 134, 418, 675
HphI GGTGA 2 cut(s) 136, 716
Hpy166II GTNNAC 3 cut(s) 284, 842, 1029
Hpy188I TCNGA 7 cut(s) 91, 97, 198, 470, 540, 593, 855
Hpy188III TCNNGA 7 cut(s) 134, 418, 617, 815, 887, 911, 959
Hpy8I GTNNAC 3 cut(s) 284, 842, 1029
Hpy99I CGWCG 2 cut(s) 33, 143
HpyAV CCTTC 4 cut(s) 140, 193, 502, 884
HpyCH4III ACNGT 3 cut(s) 425, 605, 951
HpyCH4IV ACGT 3 cut(s) 42, 141, 212
HpyCH4V TGCA 5 cut(s) 557, 710, 733, 751, 787
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 445, 636
HpyF3I CTNAG 3 cut(s) 195, 386, 515
HpySE526I ACGT 3 cut(s) 42, 141, 212
Hsp92I GRCGYC 3 cut(s) 31, 112, 141
Hsp92II CATG 4 cut(s) 262, 737, 890, 977
HspAI GCGC 6 cut(s) 217, 247, 249, 334, 877, 879
Kpn2I TCCGGA 2 cut(s) 133, 417
KroI GCCGGC 1 cut(s) 33
KroNI GCCGGC 1 cut(s) 35
Kzo9I GATC 4 cut(s) 382, 550, 826, 1044
LmnI GCTCC 1 cut(s) 444
Lsp1109I GCAGC 1 cut(s) 763
LweI GCATC 5 cut(s) 337, 483, 697, 820, 994
MaeI CTAG 3 cut(s) 48, 54, 1048
MaeII ACGT 3 cut(s) 42, 141, 212
MaeIII GTNAC 3 cut(s) 43, 142, 819
MalI GATC 4 cut(s) 384, 552, 828, 1046
MboI GATC 4 cut(s) 382, 550, 826, 1044
MboII GAAGA 3 cut(s) 899, 936, 1046
MflI RGATCY 1 cut(s) 550
MhlI GDGCHC 2 cut(s) 196, 441
MluCI AATT 7 cut(s) 291, 301, 338, 659, 763, 939, 1002
MlyI GAGTC 4 cut(s) 17, 101, 603, 827
MmeI TCCRAC 1 cut(s) 525
MnlI CCTC 5 cut(s) 22, 101, 183, 541, 651
Mph1103I ATGCAT 2 cut(s) 712, 735
MreI CGCCGGCG 1 cut(s) 33
MroI TCCGGA 2 cut(s) 133, 417
MroNI GCCGGC 1 cut(s) 33
MseI TTAA 3 cut(s) 294, 687, 740
MslI CAYNNNNRTG 4 cut(s) 257, 503, 606, 978
MspI CCGG 5 cut(s) 34, 80, 134, 418, 675
MspR9I CCNGG 4 cut(s) 25, 185, 675, 676
MvaI CCWGG 2 cut(s) 25, 185
MvnI CGCG 2 cut(s) 249, 879
MwoI GCNNNNNNNGC 3 cut(s) 34, 445, 636
NaeI GCCGGC 1 cut(s) 35
NciI CCSGG 2 cut(s) 675, 676
NdeI CATATG 1 cut(s) 450
NdeII GATC 4 cut(s) 382, 550, 826, 1044
NgoMIV GCCGGC 1 cut(s) 33
NlaIII CATG 4 cut(s) 262, 737, 890, 977
NlaIV GGNNCC 1 cut(s) 234
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 3 cut(s) 43, 142, 819
NsbI TGCGCA 1 cut(s) 335
NsiI ATGCAT 2 cut(s) 712, 735
NspV TTCGAA 1 cut(s) 530
OliI CACNNNNGTG 1 cut(s) 606
PagI TCATGA 1 cut(s) 886
PalAI GGCGCGCC 2 cut(s) 247, 877
PauI GCGCGC 2 cut(s) 247, 877
PceI AGGCCT 1 cut(s) 52
PcsI WCGNNNNNNNCGW 1 cut(s) 536
PdiI GCCGGC 1 cut(s) 35
PfeI GAWTC 6 cut(s) 98, 154, 222, 465, 772, 965
PflFI GACNNNGTC 1 cut(s) 140
PfoI TCCNGGA 1 cut(s) 183
PkrI GCNGC 1 cut(s) 753
PleI GAGTC 4 cut(s) 16, 100, 602, 826
PpsI GAGTC 4 cut(s) 16, 100, 602, 826
PpuMI RGGWCCY 1 cut(s) 232
Psp124BI GAGCTC 1 cut(s) 441
Psp5II RGGWCCY 1 cut(s) 232
Psp6I CCWGG 2 cut(s) 23, 183
PspGI CCWGG 2 cut(s) 23, 183
PspN4I GGNNCC 1 cut(s) 234
PspPI GGNCC 1 cut(s) 232
PspPPI RGGWCCY 1 cut(s) 232
PstNI CAGNNNCTG 1 cut(s) 225
PsuI RGATCY 1 cut(s) 550
PsyI GACNNNGTC 1 cut(s) 140
PteI GCGCGC 2 cut(s) 247, 877
RsaI GTAC 3 cut(s) 357, 841, 972
RsaNI GTAC 3 cut(s) 356, 840, 971
RseI CAYNNNNRTG 4 cut(s) 257, 503, 606, 978
SacI GAGCTC 1 cut(s) 441
SaqAI TTAA 3 cut(s) 294, 687, 740
SatI GCNGC 1 cut(s) 752
Sau3AI GATC 4 cut(s) 382, 550, 826, 1044
Sau96I GGNCC 1 cut(s) 232
SchI GAGTC 4 cut(s) 17, 101, 603, 827
ScrFI CCNGG 4 cut(s) 25, 185, 675, 676
SduI GDGCHC 2 cut(s) 196, 441
SfaNI GCATC 5 cut(s) 337, 483, 697, 820, 994
SfuI TTCGAA 1 cut(s) 530
SgrAI CRCCGGYG 1 cut(s) 33
SgsI GGCGCGCC 2 cut(s) 247, 877
SinI GGWCC 1 cut(s) 232
SmaI CCCGGG 1 cut(s) 676
SmiMI CAYNNNNRTG 4 cut(s) 257, 503, 606, 978
SmlI CTYRAG 2 cut(s) 443, 815
SmoI CTYRAG 2 cut(s) 443, 815
Sse9I AATT 7 cut(s) 291, 301, 338, 659, 763, 939, 1002
SseBI AGGCCT 1 cut(s) 52
SsiI CCGC 4 cut(s) 37, 147, 312, 809
SspMI CTAG 3 cut(s) 48, 54, 1048
SstI GAGCTC 1 cut(s) 441
StuI AGGCCT 1 cut(s) 52
StyD4I CCNGG 4 cut(s) 23, 183, 673, 674
TaaI ACNGT 3 cut(s) 425, 605, 951
TaiI ACGT 3 cut(s) 45, 144, 215
TaqI TCGA 3 cut(s) 152, 177, 530
TasI AATT 7 cut(s) 291, 301, 338, 659, 763, 939, 1002
TatI WGTACW 3 cut(s) 355, 839, 970
TfiI GAWTC 6 cut(s) 98, 154, 222, 465, 772, 965
Tru1I TTAA 3 cut(s) 294, 687, 740
Tru9I TTAA 3 cut(s) 294, 687, 740
TscAI CASTG 1 cut(s) 108
TseFI GTSAC 3 cut(s) 43, 142, 819
TseI GCWGC 1 cut(s) 751
Tsp45I GTSAC 3 cut(s) 43, 142, 819
TspDTI ATGAA 6 cut(s) 263, 521, 785, 875, 888, 903
TspGWI ACGGA 2 cut(s) 589, 821
TspMI CCCGGG 1 cut(s) 674
TspRI CASTG 1 cut(s) 108
Tth111I GACNNNGTC 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 232
XapI RAATTY 2 cut(s) 301, 338
XmaI CCCGGG 1 cut(s) 674
XmiI GTMKAC 1 cut(s) 1028
XspI CTAG 3 cut(s) 48, 54, 1048
ZraI GACGTC 1 cut(s) 142
Zsp2I ATGCAT 2 cut(s) 712, 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.