FvH4_5g19531

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016316
Physical Location & Seq
Reverse (-)
11356552 .. 11356893
342 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g19531.t1

Sequence Viewer

Length: 342 bp
ATGGCCGAGTCTTCAATCAGAACCCGGCGACGGCGGCGGAACTTGAGGAATAGGCCCAGAGAAGCAAAGAAACAAACCCTATCAAAGTCAGAATCCTCAAACAAAACCCTGCATGGTGGCCGGAACTGGATTGACCTTCCGGACGATGTCACCGCTTCGATTCTGTCACGTCTGTCAATGTTTGATATCCTAGAGAGAGCTCAGAGGGTGTGCCTCCCATGGCGCCGGATCTGCATGGACCCTCTGACGTGGCGCACCATCCGCATGGAGTTCGATATTCATCTCCGCCAACAAAAGCAGTGGCGTAGCCAGAAACCACAAGTAGAAGGGTCAAGAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

114

Amino Acids

13.6

Weight (kDa)

11.54

Isoelectric Point (pI)

82.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 43 - 88 9.7e-10 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016316)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g26250 FvH4_5g19531
rosa_chinensis RchiOBHm_Chr5g0015241
rosa_laevigata RLG00000032180
rosa_multiflora Rmu_sc0002209.1_g000024
rosa_roxburghii Rroxscaffold_1G00061330
rosa_rugosa Rorug05G0024900
rosa_samantha Rh5AG119400 Rh5AG119500 Rh5BG117500 Rh5BG118300 Rh5CG128600 Rh5DG116600 Rh5DG116900
rosa_wichuraiana Rw5G010320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 222
AccIII TCCGGA 1 cut(s) 139
AciI CCGC 5 cut(s) 34, 37, 153, 262, 286
AclWI GGATC 1 cut(s) 236
AcoI YGGCCR 2 cut(s) 3, 118
AcyI GRCGYC 1 cut(s) 223
AfiI CCNNNNNNNGG 1 cut(s) 30
AgsI TTSAA 1 cut(s) 15
AjiI CACGTC 2 cut(s) 170, 249
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
Alw21I GWGCWC 1 cut(s) 202
AlwI GGATC 1 cut(s) 236
Aor13HI TCCGGA 1 cut(s) 139
AoxI GGCC 3 cut(s) 3, 53, 118
AspLEI GCGC 2 cut(s) 225, 255
AspS9I GGNCC 2 cut(s) 54, 238
AsuC2I CCSGG 1 cut(s) 25
AsuHPI GGTGA 1 cut(s) 142
AvaII GGWCC 1 cut(s) 238
BanI GGYRCC 1 cut(s) 222
BanII GRGCYC 1 cut(s) 202
BbsI GAAGAC 1 cut(s) 3
Bbv12I GWGCWC 1 cut(s) 202
BccI CCATC 1 cut(s) 266
BceAI ACGGC 1 cut(s) 47
BcgI CGANNNNNNTGC 2 cut(s) 253, 287
BcnI CCSGG 1 cut(s) 25
BfaI CTAG 1 cut(s) 191
BfoI RGCGCY 1 cut(s) 226
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
Bme1390I CCNGG 1 cut(s) 25
Bme18I GGWCC 1 cut(s) 238
BmgBI CACGTC 2 cut(s) 170, 249
BmgT120I GGNCC 2 cut(s) 54, 238
BmiI GGNNCC 2 cut(s) 224, 240
BmrFI CCNGG 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 3
BpuEI CTTGAG 1 cut(s) 64
BpuMI CCSGG 1 cut(s) 25
BsaBI GATNNNNATC 1 cut(s) 279
BsaHI GRCGYC 1 cut(s) 223
BsaJI CCNNGG 1 cut(s) 218
BsaWI WCCGGW 1 cut(s) 139
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse1I ACTGG 1 cut(s) 131
Bse8I GATNNNNATC 1 cut(s) 279
BseAI TCCGGA 1 cut(s) 139
BseDI CCNNGG 1 cut(s) 218
BseGI GGATG 1 cut(s) 258
BseJI GATNNNNATC 1 cut(s) 279
BseLI CCNNNNNNNGG 1 cut(s) 30
BseMII CTCAG 1 cut(s) 215
BseNI ACTGG 1 cut(s) 131
BshFI GGCC 3 cut(s) 5, 55, 120
BshNI GGYRCC 1 cut(s) 222
BsiHKAI GWGCWC 1 cut(s) 202
BsiSI CCGG 4 cut(s) 25, 121, 140, 226
BslI CCNNNNNNNGG 1 cut(s) 30
BsnI GGCC 3 cut(s) 5, 55, 120
Bsp1286I GDGCHC 1 cut(s) 202
Bsp13I TCCGGA 1 cut(s) 139
Bsp143I GATC 1 cut(s) 228
Bsp19I CCATGG 1 cut(s) 218
BspACI CCGC 5 cut(s) 34, 37, 153, 262, 286
BspANI GGCC 3 cut(s) 5, 55, 120
BspCNI CTCAG 1 cut(s) 214
BspEI TCCGGA 1 cut(s) 139
BspLI GGNNCC 2 cut(s) 224, 240
BspPI GGATC 1 cut(s) 236
BspT107I GGYRCC 1 cut(s) 222
BsrI ACTGG 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 218
BssMI GATC 1 cut(s) 228
BssNI GRCGYC 1 cut(s) 223
BssT1I CCWWGG 1 cut(s) 218
BstACI GRCGYC 1 cut(s) 223
BstDEI CTNAG 1 cut(s) 201
BstDSI CCRYGG 1 cut(s) 218
BstF5I GGATG 1 cut(s) 258
BstH2I RGCGCY 1 cut(s) 226
BstHHI GCGC 2 cut(s) 225, 255
BstKTI GATC 1 cut(s) 231
BstMBI GATC 1 cut(s) 228
BstMWI GCNNNNNNNGC 3 cut(s) 34, 231, 261
BstSCI CCNGG 1 cut(s) 23
BstV2I GAAGAC 1 cut(s) 3
BstX2I RGATCY 1 cut(s) 228
BstXI CCANNNNNNTGG 1 cut(s) 265
BstYI RGATCY 1 cut(s) 228
BsuRI GGCC 3 cut(s) 5, 55, 120
BtgI CCRYGG 1 cut(s) 218
BtrI CACGTC 2 cut(s) 170, 249
BtsCI GGATG 1 cut(s) 258
BtsI GCAGTG 1 cut(s) 305
BtsIMutI CAGTG 1 cut(s) 305
CfoI GCGC 2 cut(s) 225, 255
Cfr13I GGNCC 2 cut(s) 54, 238
CspCI CAANNNNNGTGG 2 cut(s) 281, 316
CviAII CATG 4 cut(s) 113, 219, 235, 265
CviJI RGCY 5 cut(s) 5, 55, 120, 200, 309
CviKI_1 RGCY 5 cut(s) 5, 55, 120, 200, 309
DdeI CTNAG 1 cut(s) 201
DinI GGCGCC 1 cut(s) 224
DpnI GATC 1 cut(s) 230
DpnII GATC 1 cut(s) 228
EaeI YGGCCR 2 cut(s) 3, 118
EciI GGCGGA 2 cut(s) 52, 275
Ecl136II GAGCTC 1 cut(s) 200
Eco130I CCWWGG 1 cut(s) 218
Eco24I GRGCYC 1 cut(s) 202
Eco32I GATATC 1 cut(s) 187
Eco47I GGWCC 1 cut(s) 238
Eco53kI GAGCTC 1 cut(s) 200
EcoICRI GAGCTC 1 cut(s) 200
EcoRV GATATC 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 218
EcoT38I GRGCYC 1 cut(s) 202
EgeI GGCGCC 1 cut(s) 224
EheI GGCGCC 1 cut(s) 224
ErhI CCWWGG 1 cut(s) 218
FaeI CATG 4 cut(s) 116, 222, 238, 268
FaiI YATR 4 cut(s) 114, 220, 236, 266
FatI CATG 4 cut(s) 112, 218, 234, 264
Fnu4HI GCNGC 1 cut(s) 35
FokI GGATG 1 cut(s) 245
FriOI GRGCYC 1 cut(s) 202
Fsp4HI GCNGC 1 cut(s) 35
FspBI CTAG 1 cut(s) 191
GlaI GCGC 2 cut(s) 224, 254
GluI GCNGC 1 cut(s) 35
HaeII RGCGCY 1 cut(s) 226
HaeIII GGCC 3 cut(s) 5, 55, 120
HapII CCGG 4 cut(s) 25, 121, 140, 226
HhaI GCGC 2 cut(s) 225, 255
Hin1I GRCGYC 1 cut(s) 223
Hin1II CATG 4 cut(s) 116, 222, 238, 268
Hin6I GCGC 2 cut(s) 223, 253
HinP1I GCGC 2 cut(s) 223, 253
HinfI GANTC 3 cut(s) 8, 92, 160
HpaII CCGG 4 cut(s) 25, 121, 140, 226
HphI GGTGA 1 cut(s) 142
Hpy188I TCNGA 4 cut(s) 20, 91, 204, 246
Hpy188III TCNNGA 2 cut(s) 140, 333
Hpy99I CGWCG 1 cut(s) 33
HpyAV CCTTC 2 cut(s) 146, 320
HpyCH4IV ACGT 2 cut(s) 169, 248
HpyCH4V TGCA 2 cut(s) 112, 234
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 231, 261
HpyF3I CTNAG 1 cut(s) 201
HpySE526I ACGT 2 cut(s) 169, 248
Hsp92I GRCGYC 1 cut(s) 223
Hsp92II CATG 4 cut(s) 116, 222, 238, 268
HspAI GCGC 2 cut(s) 223, 253
KasI GGCGCC 1 cut(s) 222
Kpn2I TCCGGA 1 cut(s) 139
Kzo9I GATC 1 cut(s) 228
LpnPI CCDG 8 cut(s) 38, 70, 112, 122, 134, 153, 239, 323
MaeI CTAG 1 cut(s) 191
MaeII ACGT 2 cut(s) 169, 248
MaeIII GTNAC 2 cut(s) 148, 165
MalI GATC 1 cut(s) 230
MboI GATC 1 cut(s) 228
MboII GAAGA 1 cut(s) 3
MflI RGATCY 1 cut(s) 228
MhlI GDGCHC 1 cut(s) 202
Mly113I GGCGCC 1 cut(s) 223
MlyI GAGTC 1 cut(s) 17
MnlI CCTC 5 cut(s) 39, 106, 198, 224, 252
MroI TCCGGA 1 cut(s) 139
MseI TTAA 1 cut(s) 340
MslI CAYNNNNRTG 1 cut(s) 263
MspI CCGG 4 cut(s) 25, 121, 140, 226
MspR9I CCNGG 1 cut(s) 25
MwoI GCNNNNNNNGC 3 cut(s) 34, 231, 261
NarI GGCGCC 1 cut(s) 223
NciI CCSGG 1 cut(s) 25
NcoI CCATGG 1 cut(s) 218
NdeII GATC 1 cut(s) 228
NlaIII CATG 4 cut(s) 116, 222, 238, 268
NlaIV GGNNCC 2 cut(s) 224, 240
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 2 cut(s) 148, 165
PfeI GAWTC 2 cut(s) 92, 160
PflFI GACNNNGTC 1 cut(s) 146
PkrI GCNGC 1 cut(s) 36
PleI GAGTC 1 cut(s) 16
PluTI GGCGCC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 16
Psp124BI GAGCTC 1 cut(s) 202
PspN4I GGNNCC 2 cut(s) 224, 240
PspPI GGNCC 2 cut(s) 54, 238
PsuI RGATCY 1 cut(s) 228
PsyI GACNNNGTC 1 cut(s) 146
RseI CAYNNNNRTG 1 cut(s) 263
SacI GAGCTC 1 cut(s) 202
SaqAI TTAA 1 cut(s) 340
SatI GCNGC 1 cut(s) 35
Sau3AI GATC 1 cut(s) 228
Sau96I GGNCC 2 cut(s) 54, 238
SchI GAGTC 1 cut(s) 17
ScrFI CCNGG 1 cut(s) 25
SduI GDGCHC 1 cut(s) 202
SetI ASST 4 cut(s) 138, 172, 202, 251
SfoI GGCGCC 1 cut(s) 224
SinI GGWCC 1 cut(s) 238
SmiMI CAYNNNNRTG 1 cut(s) 263
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
SsiI CCGC 5 cut(s) 34, 37, 153, 262, 286
SspDI GGCGCC 1 cut(s) 222
SspMI CTAG 1 cut(s) 191
SstI GAGCTC 1 cut(s) 202
StyD4I CCNGG 1 cut(s) 23
StyI CCWWGG 1 cut(s) 218
TaiI ACGT 2 cut(s) 172, 251
TaqI TCGA 2 cut(s) 158, 273
TauI GCSGC 1 cut(s) 37
TfiI GAWTC 2 cut(s) 92, 160
Tru1I TTAA 1 cut(s) 340
Tru9I TTAA 1 cut(s) 340
TscAI CASTG 1 cut(s) 305
TseFI GTSAC 2 cut(s) 148, 165
Tsp45I GTSAC 2 cut(s) 148, 165
TspDTI ATGAA 1 cut(s) 269
TspRI CASTG 1 cut(s) 305
Tth111I GACNNNGTC 1 cut(s) 146
VpaK11BI GGWCC 1 cut(s) 238
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.