Rorug05G0024900

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0016316
Physical Location & Seq
Reverse (-)
1589921 .. 1590341
421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0024900.1

Sequence Viewer

Length: 180 bp
ATGAAAGCCTTAATTGTTAAGAAGGTGCTGAAGCATGTTTGGCCTGCAATAAGGAATGGCAGTGTGACAGCTTCCAATATCAAGACTTTCACCTTCAAGCAAGCAGTAGAGGCGCATGTACACATGGAGACTGGCAACTTTACAGGAAAGATTTTGCTTGTTCCAGGGACATTACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

59

Amino Acids

6.47

Weight (kDa)

10.39

Isoelectric Point (pI)

15.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N_2 PF13602 7 - 53 8.1e-06 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016316)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g26250 FvH4_5g19531
rosa_chinensis RchiOBHm_Chr5g0015241
rosa_laevigata RLG00000032180
rosa_multiflora Rmu_sc0002209.1_g000024
rosa_roxburghii Rroxscaffold_1G00061330
rosa_rugosa Rorug05G0024900
rosa_samantha Rh5AG119400 Rh5AG119500 Rh5BG117500 Rh5BG118300 Rh5CG128600 Rh5DG116600 Rh5DG116900
rosa_wichuraiana Rw5G010320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 50
AfaI GTAC 1 cut(s) 120
AgsI TTSAA 1 cut(s) 97
AjnI CCWGG 1 cut(s) 163
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
Alw26I GTCTC 1 cut(s) 122
AoxI GGCC 1 cut(s) 41
AspLEI GCGC 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 82
BciT130I CCWGG 1 cut(s) 165
BcoDI GTCTC 1 cut(s) 122
Bme1390I CCNGG 1 cut(s) 165
BmrFI CCNGG 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 136
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 164
BseNI ACTGG 1 cut(s) 136
BshFI GGCC 1 cut(s) 43
BsmAI GTCTC 1 cut(s) 122
BsnI GGCC 1 cut(s) 43
Bsp1407I TGTACA 1 cut(s) 118
BspANI GGCC 1 cut(s) 43
BsrGI TGTACA 1 cut(s) 118
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 164
Bst2UI CCWGG 1 cut(s) 165
BstAUI TGTACA 1 cut(s) 118
BstC8I GCNNGC 2 cut(s) 45, 102
BstHHI GCGC 1 cut(s) 115
BstMAI GTCTC 1 cut(s) 122
BstMWI GCNNNNNNNGC 2 cut(s) 40, 110
BstNI CCWGG 1 cut(s) 165
BstNSI RCATGY 2 cut(s) 38, 119
BstSCI CCNGG 1 cut(s) 163
BsuRI GGCC 1 cut(s) 43
BtsI GCAGTG 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 67
Cac8I GCNNGC 2 cut(s) 45, 102
CfoI GCGC 1 cut(s) 115
Csp6I GTAC 1 cut(s) 119
CviAII CATG 4 cut(s) 35, 116, 124, 177
CviJI RGCY 3 cut(s) 8, 43, 71
CviKI_1 RGCY 3 cut(s) 8, 43, 71
CviQI GTAC 1 cut(s) 119
Eco57I CTGAAG 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 163
FaeI CATG 4 cut(s) 38, 119, 127, 180
FaiI YATR 4 cut(s) 36, 117, 125, 178
FatI CATG 4 cut(s) 34, 115, 123, 176
GlaI GCGC 1 cut(s) 114
HaeIII GGCC 1 cut(s) 43
HhaI GCGC 1 cut(s) 115
Hin1II CATG 4 cut(s) 38, 119, 127, 180
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 121
Hpy188III TCNNGA 1 cut(s) 82
Hpy8I GTNNAC 1 cut(s) 121
HpyAV CCTTC 2 cut(s) 16, 103
HpyCH4V TGCA 1 cut(s) 47
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 110
Hsp92II CATG 4 cut(s) 38, 119, 127, 180
HspAI GCGC 1 cut(s) 113
LpnPI CCDG 4 cut(s) 57, 117, 129, 150
MaeIII GTNAC 1 cut(s) 64
MluCI AATT 1 cut(s) 12
MnlI CCTC 1 cut(s) 103
MseI TTAA 2 cut(s) 11, 18
MslI CAYNNNNRTG 1 cut(s) 175
MspR9I CCNGG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 165
MwoI GCNNNNNNNGC 2 cut(s) 40, 110
NlaIII CATG 4 cut(s) 38, 119, 127, 180
NmuCI GTSAC 1 cut(s) 64
NspI RCATGY 2 cut(s) 38, 119
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
RsaI GTAC 1 cut(s) 120
RsaNI GTAC 1 cut(s) 119
RseI CAYNNNNRTG 1 cut(s) 175
SaqAI TTAA 2 cut(s) 11, 18
ScrFI CCNGG 1 cut(s) 165
SetI ASST 3 cut(s) 27, 73, 95
SmiMI CAYNNNNRTG 1 cut(s) 175
Sse9I AATT 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 163
TasI AATT 1 cut(s) 12
TatI WGTACW 1 cut(s) 118
Tru1I TTAA 2 cut(s) 11, 18
Tru9I TTAA 2 cut(s) 11, 18
TscAI CASTG 1 cut(s) 67
TseFI GTSAC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 67
XceI RCATGY 2 cut(s) 38, 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.