FvH4_4g26420

Plays an essential role in chain termination during de novo fatty acid synthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014724
Physical Location & Seq
Forward (+)
27805960 .. 27808072
2113 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g26420.t1

Sequence Viewer

Length: 1347 bp
ATGGCCACCTTCTCAACTCTAGCCTACTTCCCCATTACAATTAAGTTCTCCTGGATTAGGGCCAGTTATGACCCCAACAAGAAGAGCATGAACAACATCAAGATCAATGGTACCTATACCAAGTCCTCAACCAAGGTTGACATGGCAAGCACTTTAACATCAGTTACTTCTGTTACTGAAAATGGTTACATTAGTGAACAGCAAGTTCGACAGAATATTCCGACAACCAAGCAGTCTGTTGATCATTATCGCCAAGGGATGATGATCGAAGGCGGTGTAGGGTACAGACAGAGGGTGGTTATTAGGTCTTATGAAGTTGGTCCTGATAAAACTGCAACGTTGGAGAGCATCCTTAATCTTCTGCAGGAAACAGCATTAAATCATGTGTGGATGTCAGGACTCCTCAGTGATGGGTTTGGAGCAACTCATGGAATGATGAAGAATGATCTCCTATGGGTTGTGTCAAGAATGCAAGTTCAAGTTGATCACTATCCTATCTGGGGAGAAGTACTGGAAATTGACACTTGGGTTGGGGCATCAGGGAAGAATGGTATGCGTCGAGACTGGTTGATCCGAAGTGAAGCCACAGGTCATGTTTTTGCTCGTGCAACCAGCACCTGGGTGATGATGAACCGAAAGACAAGACGCCTCTCAAAAATGCCAGAAGAAGTGAGAGCTGAGATTGCACCTTGGTTTATACAGAAGCAAGCAATCACAGAAGATAACTTTGACAAAATTGTCAAGTTGGACAGCAAAGCCAAGTACATGAACAAGGACTTGAAGCCCAAGAGAAGCGACTTAGACATGAACCACCATGTCAACAATGTCAAGTATGTGAGGTGGATGCTTGAGACCATCCCTGACCAAATTTTAGAGGCACATCAACTGACAAGCATTGTCCTAGAGTACAGAAGGGAGTGTGGGAGCTCAGATATAGTTCAATCACTTTGCCAACCCAATGAAGACGGCATTCTCAAAGATGGACTACAGCAAGAGAAAGATACCACCCTCGTAAACGGGTTTTCATTGGCAGCTGAGATTCTTGAGGGTAATGGATACCTTGCATCCTTTGGCAAGCAGCCATTGCGGTATACACATCTCCTACAAGTTGATGGAGAGTCCCAAAATGAAGAGATTGTTAGAGGAAGAACTACATGGAAGAAGAAGGGCATGGTGTGGAGCTTGCTTCAAATCCCAGAAGGGACCATGGCTCTGCTTGGCCTTCATGGGAAGCTGATTGAAGATCCTAATAAGCCGAGTGTGATTGCTGAGTCCCCAAAAGAGAACGACAAAAGTCATCATGGGTTCTACCGAGTGAATAAGGGTGTAATGTGTGGCAATGGTTAA

Protein Analysis

449

Amino Acids

50.81

Weight (kDa)

8.67

Isoelectric Point (pI)

42.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyl-ACP_TE PF01643 94 - 228 6.3e-34 Acyl-ACP thioesterase N-terminal domain
Acyl-ACP_TE_C PF20791 252 - 331 9.2e-23 Acyl-ACP thioesterase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014724)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g26420
malus_domestica MD13G1032900.v1.1 MD16G1034900.v1.1
prunus_persica Prupe.1G319800_v2.0.a1
pyrus_communis pycom13g02840 pycom16g02970
rosa_chinensis RchiOBHm_Chr4g0434051
rosa_laevigata RLG00000006705
rosa_multiflora Rmu_sc0000352.1_g000027 Rmu_sc0000352.1_g000028
rosa_roxburghii Rroxscaffold_5G00375460
rosa_rugosa Rorug04G0273000
rosa_samantha Rh4AG328700 Rh4BG336000 Rh4CG351500 Rh4DG332400
rosa_wichuraiana Rw4G028500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 737
Acc65I GGTACC 1 cut(s) 110
AccB1I GGYRCC 1 cut(s) 110
AccB7I CCANNNNNTGG 1 cut(s) 618
AccI GTMKAC 1 cut(s) 1091
AciI CCGC 2 cut(s) 273, 1087
AclI AACGTT 1 cut(s) 338
AclWI GGATC 2 cut(s) 565, 1238
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 867
AcyI GRCGYC 1 cut(s) 646
AfaI GTAC 5 cut(s) 112, 284, 510, 764, 908
AfiI CCNNNNNNNGG 3 cut(s) 57, 500, 618
AgsI TTSAA 5 cut(s) 479, 781, 941, 1190, 1241
AjnI CCWGG 2 cut(s) 50, 617
AleI CACNNNNGTG 1 cut(s) 620
AluBI AGCT 5 cut(s) 677, 927, 1034, 1182, 1234
AluI AGCT 5 cut(s) 677, 927, 1034, 1182, 1234
Alw21I GWGCWC 1 cut(s) 929
Alw26I GTCTC 2 cut(s) 555, 845
AlwI GGATC 2 cut(s) 565, 1238
AlwNI CAGNNNCTG 1 cut(s) 618
AoxI GGCC 3 cut(s) 3, 60, 1219
ApeKI GCWGC 2 cut(s) 1031, 1078
ApoI RAATTY 1 cut(s) 867
Asp718I GGTACC 1 cut(s) 110
AspS9I GGNCC 3 cut(s) 60, 320, 1203
AsuHPI GGTGA 1 cut(s) 634
AvaII GGWCC 2 cut(s) 320, 1203
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 110
BanII GRGCYC 1 cut(s) 929
BauI CACGAG 1 cut(s) 603
BbsI GAAGAC 1 cut(s) 969
Bbv12I GWGCWC 1 cut(s) 929
BbvI GCAGC 2 cut(s) 1043, 1090
BccI CCATC 4 cut(s) 404, 863, 974, 1106
BceAI ACGGC 1 cut(s) 982
BciT130I CCWGG 2 cut(s) 52, 619
BciVI GTATCC 1 cut(s) 1049
BclI TGATCA 2 cut(s) 241, 484
BcoDI GTCTC 2 cut(s) 555, 845
BfaI CTAG 2 cut(s) 20, 902
BfmI CTRYAG 2 cut(s) 362, 986
BfuI GTATCC 1 cut(s) 1049
BisI GCNGC 2 cut(s) 1032, 1079
BlsI GCNGC 2 cut(s) 1033, 1080
BmcAI AGTACT 1 cut(s) 510
Bme1390I CCNGG 2 cut(s) 52, 619
Bme18I GGWCC 2 cut(s) 320, 1203
BmgT120I GGNCC 3 cut(s) 60, 320, 1203
BmiI GGNNCC 2 cut(s) 112, 1204
BmrFI CCNGG 2 cut(s) 52, 619
BmsI GCATC 4 cut(s) 357, 545, 834, 1073
BoxI GACNNNNGTC 1 cut(s) 1293
BpiI GAAGAC 1 cut(s) 969
BpuEI CTTGAG 2 cut(s) 869, 1064
BsaBI GATNNNNATC 3 cut(s) 246, 263, 489
BsaHI GRCGYC 1 cut(s) 646
BsaI GGTCTC 1 cut(s) 845
BsaJI CCNNGG 5 cut(s) 132, 253, 618, 689, 1206
Bsc4I CCNNNNNNNGG 3 cut(s) 57, 500, 618
Bse1I ACTGG 3 cut(s) 63, 516, 569
Bse3DI GCAATG 2 cut(s) 1082, 1345
Bse8I GATNNNNATC 3 cut(s) 246, 263, 489
BseBI CCWGG 2 cut(s) 52, 619
BseDI CCNNGG 5 cut(s) 132, 253, 618, 689, 1206
BseGI GGATG 6 cut(s) 264, 348, 396, 849, 855, 1064
BseJI GATNNNNATC 3 cut(s) 246, 263, 489
BseLI CCNNNNNNNGG 3 cut(s) 57, 500, 618
BseMI GCAATG 2 cut(s) 1082, 1345
BseMII CTCAG 5 cut(s) 418, 669, 942, 1026, 1260
BseNI ACTGG 3 cut(s) 63, 516, 569
BseRI GAGGAG 1 cut(s) 392
BseXI GCAGC 2 cut(s) 1043, 1090
BshFI GGCC 3 cut(s) 5, 62, 1221
BshNI GGYRCC 1 cut(s) 110
BsiHKAI GWGCWC 1 cut(s) 929
BslFI GGGAC 3 cut(s) 1105, 1216, 1258
BslI CCNNNNNNNGG 3 cut(s) 57, 500, 618
BsmAI GTCTC 2 cut(s) 555, 845
BsmFI GGGAC 3 cut(s) 1105, 1216, 1258
BsmI GAATGC 2 cut(s) 474, 969
BsnI GGCC 3 cut(s) 5, 62, 1221
Bso31I GGTCTC 1 cut(s) 845
Bsp1286I GDGCHC 1 cut(s) 929
Bsp143I GATC 7 cut(s) 102, 241, 264, 445, 484, 570, 1243
Bsp19I CCATGG 1 cut(s) 1206
BspACI CCGC 2 cut(s) 273, 1087
BspANI GGCC 3 cut(s) 5, 62, 1221
BspCNI CTCAG 5 cut(s) 417, 670, 941, 1027, 1261
BspLI GGNNCC 2 cut(s) 112, 1204
BspMAI CTGCAG 1 cut(s) 366
BspPI GGATC 2 cut(s) 565, 1238
BspQI GCTCTTC 1 cut(s) 77
BspT107I GGYRCC 1 cut(s) 110
BspTNI GGTCTC 1 cut(s) 845
BsrDI GCAATG 2 cut(s) 1082, 1345
BsrI ACTGG 3 cut(s) 63, 516, 569
BssECI CCNNGG 5 cut(s) 132, 253, 618, 689, 1206
BssMI GATC 7 cut(s) 102, 241, 264, 445, 484, 570, 1243
BssNAI GTATAC 1 cut(s) 1092
BssNI GRCGYC 1 cut(s) 646
BssSI CACGAG 1 cut(s) 603
BssT1I CCWWGG 4 cut(s) 132, 253, 689, 1206
Bst1107I GTATAC 1 cut(s) 1092
Bst2BI CACGAG 1 cut(s) 603
Bst2UI CCWGG 2 cut(s) 52, 619
Bst6I CTCTTC 2 cut(s) 77, 1125
BstACI GRCGYC 1 cut(s) 646
BstAPI GCANNNNNTGC 1 cut(s) 1084
BstC8I GCNNGC 4 cut(s) 148, 708, 1076, 1184
BstDEI CTNAG 6 cut(s) 404, 678, 799, 928, 1035, 1269
BstDSI CCRYGG 1 cut(s) 1206
BstENI CCTNNNNNAGG 1 cut(s) 55
BstF5I GGATG 6 cut(s) 264, 348, 396, 849, 855, 1064
BstKTI GATC 7 cut(s) 105, 244, 267, 448, 487, 573, 1246
BstMAI GTCTC 2 cut(s) 555, 845
BstMBI GATC 7 cut(s) 102, 241, 264, 445, 484, 570, 1243
BstMWI GCNNNNNNNGC 2 cut(s) 683, 1084
BstNI CCWGG 2 cut(s) 52, 619
BstPAI GACNNNNGTC 1 cut(s) 1293
BstSCI CCNGG 2 cut(s) 50, 617
BstSFI CTRYAG 2 cut(s) 362, 986
BstV1I GCAGC 2 cut(s) 1043, 1090
BstV2I GAAGAC 1 cut(s) 969
BstX2I RGATCY 1 cut(s) 1243
BstYI RGATCY 1 cut(s) 1243
BstZ17I GTATAC 1 cut(s) 1092
BsuI GTATCC 1 cut(s) 1049
BsuRI GGCC 3 cut(s) 5, 62, 1221
BtgI CCRYGG 1 cut(s) 1206
BtsCI GGATG 6 cut(s) 264, 348, 396, 849, 855, 1064
BtsIMutI CAGTG 1 cut(s) 412
Cac8I GCNNGC 4 cut(s) 148, 708, 1076, 1184
CaiI CAGNNNCTG 1 cut(s) 618
Cfr13I GGNCC 3 cut(s) 60, 320, 1203
CseI GACGC 2 cut(s) 545, 654
Csp6I GTAC 5 cut(s) 111, 283, 509, 763, 907
CviQI GTAC 5 cut(s) 111, 283, 509, 763, 907
DdeI CTNAG 6 cut(s) 404, 678, 799, 928, 1035, 1269
DpnI GATC 7 cut(s) 104, 243, 266, 447, 486, 572, 1245
DpnII GATC 7 cut(s) 102, 241, 264, 445, 484, 570, 1243
DrdI GACNNNNNNGTC 1 cut(s) 737
DseDI GACNNNNNNGTC 1 cut(s) 737
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 77, 1125
EarI CTCTTC 2 cut(s) 77, 1125
Ecl136II GAGCTC 1 cut(s) 927
Eco130I CCWWGG 4 cut(s) 132, 253, 689, 1206
Eco24I GRGCYC 1 cut(s) 929
Eco31I GGTCTC 1 cut(s) 845
Eco47I GGWCC 2 cut(s) 320, 1203
Eco53kI GAGCTC 1 cut(s) 927
EcoICRI GAGCTC 1 cut(s) 927
EcoNI CCTNNNNNAGG 1 cut(s) 55
EcoRII CCWGG 2 cut(s) 50, 617
EcoT14I CCWWGG 4 cut(s) 132, 253, 689, 1206
EcoT38I GRGCYC 1 cut(s) 929
ErhI CCWWGG 4 cut(s) 132, 253, 689, 1206
FaqI GGGAC 3 cut(s) 1105, 1216, 1258
FbaI TGATCA 2 cut(s) 241, 484
FblI GTMKAC 1 cut(s) 1091
Fnu4HI GCNGC 2 cut(s) 1032, 1079
FokI GGATG 6 cut(s) 271, 335, 403, 842, 856, 1051
FriOI GRGCYC 1 cut(s) 929
Fsp4HI GCNGC 2 cut(s) 1032, 1079
FspBI CTAG 2 cut(s) 20, 902
GluI GCNGC 2 cut(s) 1032, 1079
HaeIII GGCC 3 cut(s) 5, 62, 1221
HgaI GACGC 2 cut(s) 545, 654
Hin1I GRCGYC 1 cut(s) 646
HincII GTYRAC 2 cut(s) 139, 820
HindII GTYRAC 2 cut(s) 139, 820
HinfI GANTC 4 cut(s) 399, 1039, 1118, 1271
HphI GGTGA 1 cut(s) 634
Hpy166II GTNNAC 5 cut(s) 139, 197, 820, 1015, 1092
Hpy188I TCNGA 3 cut(s) 222, 575, 931
Hpy188III TCNNGA 6 cut(s) 100, 323, 396, 465, 560, 1043
Hpy8I GTNNAC 5 cut(s) 139, 197, 820, 1015, 1092
Hpy99I CGWCG 1 cut(s) 561
HpyAV CCTTC 6 cut(s) 19, 263, 906, 1159, 1193, 1232
HpyCH4IV ACGT 1 cut(s) 338
HpyCH4V TGCA 6 cut(s) 335, 364, 472, 608, 686, 1064
HpyF10VI GCNNNNNNNGC 2 cut(s) 683, 1084
HpyF3I CTNAG 6 cut(s) 404, 678, 799, 928, 1035, 1269
HpySE526I ACGT 1 cut(s) 338
Hsp92I GRCGYC 1 cut(s) 646
KpnI GGTACC 1 cut(s) 114
Ksp22I TGATCA 2 cut(s) 241, 484
Kzo9I GATC 7 cut(s) 102, 241, 264, 445, 484, 570, 1243
LguI GCTCTTC 1 cut(s) 77
LmnI GCTCC 3 cut(s) 419, 924, 1179
Lsp1109I GCAGC 2 cut(s) 1043, 1090
LweI GCATC 4 cut(s) 357, 545, 834, 1073
MaeI CTAG 2 cut(s) 20, 902
MaeII ACGT 1 cut(s) 338
MaeIII GTNAC 3 cut(s) 163, 172, 185
MalI GATC 7 cut(s) 104, 243, 266, 447, 486, 572, 1245
MboI GATC 7 cut(s) 102, 241, 264, 445, 484, 570, 1243
MflI RGATCY 1 cut(s) 1243
MhlI GDGCHC 1 cut(s) 929
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 39, 516, 735, 867
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 393, 1127, 1280
MmeI TCCRAC 3 cut(s) 245, 321, 726
MnlI CCTC 9 cut(s) 136, 285, 413, 659, 831, 868, 1019, 1039, 1136
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 5 cut(s) 42, 155, 354, 377, 1345
MslI CAYNNNNRTG 1 cut(s) 620
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 1034
MspR9I CCNGG 2 cut(s) 52, 619
Mva1269I GAATGC 2 cut(s) 474, 969
MvaI CCWGG 2 cut(s) 52, 619
MwoI GCNNNNNNNGC 2 cut(s) 683, 1084
NcoI CCATGG 1 cut(s) 1206
NdeII GATC 7 cut(s) 102, 241, 264, 445, 484, 570, 1243
NlaIV GGNNCC 2 cut(s) 112, 1204
NmeAIII GCCGAG 1 cut(s) 1281
OliI CACNNNNGTG 1 cut(s) 620
PciSI GCTCTTC 1 cut(s) 77
PctI GAATGC 2 cut(s) 474, 969
PfeI GAWTC 1 cut(s) 1039
PflMI CCANNNNNTGG 1 cut(s) 618
PfoI TCCNGGA 1 cut(s) 50
PkrI GCNGC 2 cut(s) 1033, 1080
PleI GAGTC 3 cut(s) 393, 1126, 1279
PpsI GAGTC 3 cut(s) 393, 1126, 1279
PshAI GACNNNNGTC 1 cut(s) 1293
Psp124BI GAGCTC 1 cut(s) 929
Psp1406I AACGTT 1 cut(s) 338
Psp6I CCWGG 2 cut(s) 50, 617
PspGI CCWGG 2 cut(s) 50, 617
PspN4I GGNNCC 2 cut(s) 112, 1204
PspPI GGNCC 3 cut(s) 60, 320, 1203
PstI CTGCAG 1 cut(s) 366
PstNI CAGNNNCTG 1 cut(s) 618
PsuI RGATCY 1 cut(s) 1243
PvuII CAGCTG 1 cut(s) 1034
RsaI GTAC 5 cut(s) 112, 284, 510, 764, 908
RsaNI GTAC 5 cut(s) 111, 283, 509, 763, 907
RseI CAYNNNNRTG 1 cut(s) 620
SacI GAGCTC 1 cut(s) 929
SapI GCTCTTC 1 cut(s) 77
SaqAI TTAA 5 cut(s) 42, 155, 354, 377, 1345
SatI GCNGC 2 cut(s) 1032, 1079
Sau3AI GATC 7 cut(s) 102, 241, 264, 445, 484, 570, 1243
Sau96I GGNCC 3 cut(s) 60, 320, 1203
ScaI AGTACT 1 cut(s) 510
SchI GAGTC 3 cut(s) 393, 1127, 1280
ScrFI CCNGG 2 cut(s) 52, 619
SduI GDGCHC 1 cut(s) 929
SfaNI GCATC 4 cut(s) 357, 545, 834, 1073
SfcI CTRYAG 2 cut(s) 362, 986
SinI GGWCC 2 cut(s) 320, 1203
SmiMI CAYNNNNRTG 1 cut(s) 620
SmlI CTYRAG 2 cut(s) 848, 1043
SmoI CTYRAG 2 cut(s) 848, 1043
Sse9I AATT 4 cut(s) 39, 516, 735, 867
SsiI CCGC 2 cut(s) 273, 1087
SspI AATATT 1 cut(s) 217
SspMI CTAG 2 cut(s) 20, 902
SstI GAGCTC 1 cut(s) 929
StyD4I CCNGG 2 cut(s) 50, 617
StyI CCWWGG 4 cut(s) 132, 253, 689, 1206
TaiI ACGT 1 cut(s) 341
TaqI TCGA 3 cut(s) 208, 267, 559
TasI AATT 4 cut(s) 39, 516, 735, 867
TatI WGTACW 3 cut(s) 508, 762, 906
TfiI GAWTC 1 cut(s) 1039
Tru1I TTAA 5 cut(s) 42, 155, 354, 377, 1345
Tru9I TTAA 5 cut(s) 42, 155, 354, 377, 1345
TscAI CASTG 1 cut(s) 412
TseI GCWGC 2 cut(s) 1031, 1078
TspRI CASTG 1 cut(s) 412
Van91I CCANNNNNTGG 1 cut(s) 618
VpaK11BI GGWCC 2 cut(s) 320, 1203
XagI CCTNNNNNAGG 1 cut(s) 55
XapI RAATTY 1 cut(s) 867
XcmI CCANNNNNNNNNTGG 1 cut(s) 139
XmiI GTMKAC 1 cut(s) 1091
XspI CTAG 2 cut(s) 20, 902
ZrmI AGTACT 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.