Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000352.1

Orthogroup ID

OG0014724

Physical Location & Seq

Genomic Coordinates Forward (+)

112703 .. 113629

Gene Structure 927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000352.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atggaaacatcatgcaggggagaagtattggaaattgacacttgggttggggcatcagggaagaatggtatgcgtcgagactggttaatccgaagtgaagccacaggtcatgtttttgctagtgcaaccagcctcttgctatcgcttcctcctctccatagatgccgtcacaacaatctttgctgcccctcttgctctcgtgtaccggtcttgaagcctctagcctcttgctatcgcttcctcctctccatagatgccgtcacaacaatctttgctgcccctcttgctctcgcagcgggtggtagcaccccggatctgggaaagattggcggtggtcctatgtgcaggtcctctcaatcttttctacttggcatacctttgatcgaggatgactatgatgtgcctcttgtcactctgaagaagaagacgggtagaccgtcggaagtaagaacaagagccaacgtcccagtaactacaattggaggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko01100 ko01212 map00061 map01100 map01212

Pfam Domains

Protein Families

Acyl-ACP_TE

Protein Analysis

162

Amino Acids

17.29

Weight (kDa)

8.96

Isoelectric Point (pI)

46.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014724)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26420
malus_domestica	MD13G1032900.v1.1 MD16G1034900.v1.1
prunus_persica	Prupe.1G319800_v2.0.a1
pyrus_communis	pycom13g02840 pycom16g02970
rosa_chinensis	RchiOBHm_Chr4g0434051
rosa_laevigata	RLG00000006705
rosa_multiflora	Rmu_sc0000352.1_g000027 Rmu_sc0000352.1_g000028
rosa_roxburghii	Rroxscaffold_5G00375460
rosa_rugosa	Rorug04G0273000
rosa_samantha	Rh4AG328700 Rh4BG336000 Rh4CG351500 Rh4DG332400
rosa_wichuraiana	Rw4G028500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	336
AccI	GTMKAC	1 cut(s)	433
AciI	CCGC	2 cut(s)	296, 330
AclWI	GGATC	1 cut(s)	321
AcuI	CTGAAG	1 cut(s)	437
AfaI	GTAC	1 cut(s)	204
AfiI	CCNNNNNNNGG	2 cut(s)	316, 317
AgeI	ACCGGT	1 cut(s)	205
AgsI	TTSAA	1 cut(s)	214
Alw26I	GTCTC	1 cut(s)	72
AlwI	GGATC	1 cut(s)	321
ApeKI	GCWGC	3 cut(s)	183, 275, 293
AsiGI	ACCGGT	1 cut(s)	205
AspS9I	GGNCC	2 cut(s)	335, 348
AsuC2I	CCSGG	1 cut(s)	311
AvaII	GGWCC	2 cut(s)	335, 348
BauI	CACGAG	1 cut(s)	198
BbsI	GAAGAC	1 cut(s)	431
BbvI	GCAGC	3 cut(s)	170, 262, 305
BceAI	ACGGC	2 cut(s)	150, 242
BcnI	CCSGG	1 cut(s)	311
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	2 cut(s)	120, 221
BfuAI	ACCTGC	1 cut(s)	336
BisI	GCNGC	3 cut(s)	184, 276, 294
BlsI	GCNGC	3 cut(s)	185, 277, 295
Bme1390I	CCNGG	1 cut(s)	311
Bme18I	GGWCC	2 cut(s)	335, 348
BmgT120I	GGNCC	2 cut(s)	335, 348
BmrFI	CCNGG	1 cut(s)	311
BmrI	ACTGGG	1 cut(s)	461
BmsI	GCATC	3 cut(s)	62, 152, 244
BmuI	ACTGGG	1 cut(s)	461
BpiI	GAAGAC	1 cut(s)	431
BpuMI	CCSGG	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	309
BsaWI	WCCGGW	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	2 cut(s)	316, 317
Bse118I	RCCGGY	1 cut(s)	205
Bse1I	ACTGG	2 cut(s)	86, 467
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	1 cut(s)	394
BseLI	CCNNNNNNNGG	2 cut(s)	316, 317
BseNI	ACTGG	2 cut(s)	86, 467
BseRI	GAGGAG	2 cut(s)	141, 233
BseXI	GCAGC	3 cut(s)	170, 262, 305
BsgI	GTGCAG	1 cut(s)	364
BshTI	ACCGGT	1 cut(s)	205
BsiSI	CCGG	2 cut(s)	206, 311
BslFI	GGGAC	1 cut(s)	449
BslI	CCNNNNNNNGG	2 cut(s)	316, 317
BsmAI	GTCTC	1 cut(s)	72
BsmFI	GGGAC	1 cut(s)	449
Bsp143I	GATC	2 cut(s)	313, 381
BspACI	CCGC	2 cut(s)	296, 330
BspMI	ACCTGC	1 cut(s)	336
BspPI	GGATC	1 cut(s)	321
BsrFI	RCCGGY	1 cut(s)	205
BsrI	ACTGG	2 cut(s)	86, 467
BssAI	RCCGGY	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	2 cut(s)	313, 381
BssSI	CACGAG	1 cut(s)	198
Bst2BI	CACGAG	1 cut(s)	198
Bst4CI	ACNGT	1 cut(s)	438
BstF5I	GGATG	1 cut(s)	394
BstKTI	GATC	2 cut(s)	316, 384
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	2 cut(s)	313, 381
BstMWI	GCNNNNNNNGC	3 cut(s)	192, 284, 293
BstSCI	CCNGG	1 cut(s)	309
BstV1I	GCAGC	3 cut(s)	170, 262, 305
BstV2I	GAAGAC	1 cut(s)	431
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
BtsCI	GGATG	1 cut(s)	394
BveI	ACCTGC	1 cut(s)	336
Cfr10I	RCCGGY	1 cut(s)	205
Cfr13I	GGNCC	2 cut(s)	335, 348
CseI	GACGC	1 cut(s)	62
Csp6I	GTAC	1 cut(s)	203
CspAI	ACCGGT	1 cut(s)	205
CviAII	CATG	2 cut(s)	12, 110
CviJI	RGCY	5 cut(s)	101, 132, 217, 224, 458
CviKI_1	RGCY	5 cut(s)	101, 132, 217, 224, 458
CviQI	GTAC	1 cut(s)	203
DpnI	GATC	2 cut(s)	315, 383
DpnII	GATC	2 cut(s)	313, 381
Eco47I	GGWCC	2 cut(s)	335, 348
Eco57I	CTGAAG	1 cut(s)	437
EcoO109I	RGGNCCY	1 cut(s)	348
FaeI	CATG	2 cut(s)	15, 113
FaiI	YATR	8 cut(s)	13, 71, 111, 159, 251, 341, 374, 396
FaqI	GGGAC	1 cut(s)	449
FatI	CATG	2 cut(s)	11, 109
FauI	CCCGC	1 cut(s)	289
FblI	GTMKAC	1 cut(s)	433
Fnu4HI	GCNGC	3 cut(s)	184, 276, 294
FokI	GGATG	1 cut(s)	401
Fsp4HI	GCNGC	3 cut(s)	184, 276, 294
FspBI	CTAG	2 cut(s)	120, 221
GluI	GCNGC	3 cut(s)	184, 276, 294
HapII	CCGG	2 cut(s)	206, 311
HgaI	GACGC	1 cut(s)	62
Hin1II	CATG	2 cut(s)	15, 113
HpaII	CCGG	2 cut(s)	206, 311
Hpy166II	GTNNAC	2 cut(s)	203, 434
Hpy188I	TCNGA	3 cut(s)	92, 417, 442
Hpy188III	TCNNGA	2 cut(s)	77, 211
Hpy8I	GTNNAC	2 cut(s)	203, 434
Hpy99I	CGWCG	2 cut(s)	78, 442
HpyCH4III	ACNGT	1 cut(s)	438
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	3 cut(s)	15, 125, 345
HpyF10VI	GCNNNNNNNGC	3 cut(s)	192, 284, 293
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	2 cut(s)	15, 113
Kzo9I	GATC	2 cut(s)	313, 381
LpnPI	CCDG	9 cut(s)	42, 67, 90, 142, 219, 302, 324, 331, 480
Lsp1109I	GCAGC	3 cut(s)	170, 262, 305
LweI	GCATC	3 cut(s)	62, 152, 244
MaeI	CTAG	2 cut(s)	120, 221
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	4 cut(s)	167, 259, 409, 469
MalI	GATC	2 cut(s)	315, 383
MboI	GATC	2 cut(s)	313, 381
MboII	GAAGA	4 cut(s)	73, 430, 433, 436
MfeI	CAATTG	1 cut(s)	477
MflI	RGATCY	1 cut(s)	313
MluCI	AATT	2 cut(s)	33, 477
MmeI	TCCRAC	1 cut(s)	420
MseI	TTAA	1 cut(s)	86
MspA1I	CMGCKG	1 cut(s)	296
MspI	CCGG	2 cut(s)	206, 311
MspR9I	CCNGG	1 cut(s)	311
MunI	CAATTG	1 cut(s)	477
MwoI	GCNNNNNNNGC	3 cut(s)	192, 284, 293
NciI	CCSGG	1 cut(s)	311
NdeII	GATC	2 cut(s)	313, 381
NlaIII	CATG	2 cut(s)	15, 113
NmuCI	GTSAC	3 cut(s)	167, 259, 409
PcsI	WCGNNNNNNNCGW	1 cut(s)	434
PinAI	ACCGGT	1 cut(s)	205
PkrI	GCNGC	3 cut(s)	185, 277, 295
PpuMI	RGGWCCY	1 cut(s)	348
Psp5II	RGGWCCY	1 cut(s)	348
PspPI	GGNCC	2 cut(s)	335, 348
PspPPI	RGGWCCY	1 cut(s)	348
PsuI	RGATCY	1 cut(s)	313
RsaI	GTAC	1 cut(s)	204
RsaNI	GTAC	1 cut(s)	203
SaqAI	TTAA	1 cut(s)	86
SatI	GCNGC	3 cut(s)	184, 276, 294
Sau3AI	GATC	2 cut(s)	313, 381
Sau96I	GGNCC	2 cut(s)	335, 348
ScrFI	CCNGG	1 cut(s)	311
SetI	ASST	5 cut(s)	109, 350, 379, 465, 487
SfaNI	GCATC	3 cut(s)	62, 152, 244
SinI	GGWCC	2 cut(s)	335, 348
Sse9I	AATT	2 cut(s)	33, 477
SsiI	CCGC	2 cut(s)	296, 330
SspMI	CTAG	2 cut(s)	120, 221
StyD4I	CCNGG	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	438
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	2 cut(s)	76, 384
TasI	AATT	2 cut(s)	33, 477
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TseFI	GTSAC	3 cut(s)	167, 259, 409
TseI	GCWGC	3 cut(s)	183, 275, 293
Tsp45I	GTSAC	3 cut(s)	167, 259, 409
VpaK11BI	GGWCC	2 cut(s)	335, 348
XmiI	GTMKAC	1 cut(s)	433
XspI	CTAG	2 cut(s)	120, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.