MD13G1032900.v1.1

Plays an essential role in chain termination during de novo fatty acid synthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0014724
Physical Location & Seq
Forward (+)
2310182 .. 2312035
1854 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1032900.v1.1.491

Sequence Viewer

Length: 1191 bp
ATGGCCACCTTCTCTCATCCTGCCTACTTCCCTGTAAGGCGTTCTTCCTGCAGAGATAGCTATGAACCCATTAAGCAAAACCTGAGCAATATCAAGATCGATGGAACTTCCAAGAAACCCGCAAACAAAGTTGAAATGGCCGGTGTGGCAACCACTTCCATTTCCATGACTTTATTAGGAAATGGCTACGTGACTGAGCAGCAAGCCCGACAGAACATTCCGACAACCAAGCAGTCCGTTGATCATTTCCGACAAGGGTTCAGCATCGAAGGTGGCGTGGGGTACAGGCAGAGGGTTGTCATCAGGTCCTATGAGGTCGGGCCGGATAAAACTGCGACACTTGAGAGCGTCCTCAATCTGCTGCAGGAAACTGCATTGAATCATGTGTGGATGTCTGGACTCCTGAGTGATGGATTTGGAGCAACACATGAAATGATGAGGAATGATCTTATTTGGGTTGTGTCCAGAATGCAAGTTCAAGTTGACCAGTATCCAATTTGGGGAGAGGTACTGGAAATCGACACTTGGGTTCAAGCATCAGGGAAGAATGGTATGAAGCGAGACTGGTTGATCCGAAGCCAAGCCACGGGCCATGTTTTCGCTCGTGCGACCAGCACCTGGGTGATGATGAACCGGAAAACTAGGCGTCTTTCGAAAATGCCAGAGGGAGTGAGGGGTGAGATTGCACCTTGGTTCATAGAGAAGCAGGCAATCACAGACGATGTCCCTGAGAAAATCATCAAGTTGGACAACAACGCTAAGTATGTCAACAGCGATCTGAAGCCCAAGAGAAGTGATTTGGACATGAACCGCCATGTCAACAATGTCAAGTATGTAAAATGGATGCTTGAGACGATTCCTGACGATATTTTGGAGTCTCACCAACTGACTGGAATCACACTAGAATACAGAAGGGAATGTGGGAGTTCAGATATAGTTCAATCGCTTTGCAATCCAGAAGATGGAATGTTCATAGAGAGACCGAAACAAGAGAATCAAAGTTTGCTGGATGGATTTTCTCTGGCAGCTGGAATTCTTGAGAACGGCGGGTTTTTGGGCTCCTTTGAGAAGCAACAATTGAGATATACACATCTCCTCCAAACAAATGGGAACCTTAAAGATGAAGAGATTGTTCGAGGACGGACTGTTTGGAAGAAAAAACCAGAGCCCTCCCCATTTGCTTCTATGTAG

Protein Analysis

397

Amino Acids

44.96

Weight (kDa)

8.56

Isoelectric Point (pI)

48.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyl-ACP_TE PF01643 94 - 225 8.9e-33 Acyl-ACP thioesterase N-terminal domain
Acyl-ACP_TE_C PF20791 253 - 385 3.7e-23 Acyl-ACP thioesterase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014724)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g26420
malus_domestica MD13G1032900.v1.1 MD16G1034900.v1.1
prunus_persica Prupe.1G319800_v2.0.a1
pyrus_communis pycom13g02840 pycom16g02970
rosa_chinensis RchiOBHm_Chr4g0434051
rosa_laevigata RLG00000006705
rosa_multiflora Rmu_sc0000352.1_g000027 Rmu_sc0000352.1_g000028
rosa_roxburghii Rroxscaffold_5G00375460
rosa_rugosa Rorug04G0273000
rosa_samantha Rh4AG328700 Rh4BG336000 Rh4CG351500 Rh4DG332400
rosa_wichuraiana Rw4G028500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 618, 962
AciI CCGC 3 cut(s) 120, 811, 1047
AclWI GGATC 1 cut(s) 565
AcoI YGGCCR 2 cut(s) 3, 138
AcsI RAATTY 1 cut(s) 1032
AcuI CTGAAG 1 cut(s) 800
AcyI GRCGYC 1 cut(s) 646
AfaI GTAC 2 cut(s) 284, 510
AfiI CCNNNNNNNGG 4 cut(s) 500, 586, 618, 962
AgsI TTSAA 5 cut(s) 134, 379, 479, 533, 941
AjnI CCWGG 1 cut(s) 617
AleI CACNNNNGTG 1 cut(s) 620
AluBI AGCT 2 cut(s) 60, 1028
AluI AGCT 2 cut(s) 60, 1028
Alw26I GTCTC 4 cut(s) 555, 845, 882, 973
AlwI GGATC 1 cut(s) 565
AlwNI CAGNNNCTG 1 cut(s) 618
AoxI GGCC 4 cut(s) 3, 138, 320, 589
ApeKI GCWGC 3 cut(s) 199, 361, 1025
ApoI RAATTY 1 cut(s) 1032
ArsI GACNNNNNNTTYG 2 cut(s) 1131, 1163
AspS9I GGNCC 3 cut(s) 306, 320, 589
AsuHPI GGTGA 3 cut(s) 634, 689, 872
AsuII TTCGAA 1 cut(s) 653
AvaII GGWCC 1 cut(s) 306
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 2 cut(s) 1061, 1170
BauI CACGAG 1 cut(s) 603
BbvI GCAGC 3 cut(s) 211, 348, 1037
BccI CCATC 4 cut(s) 95, 404, 956, 1004
BceAI ACGGC 1 cut(s) 1060
BciT130I CCWGG 1 cut(s) 619
BciVI GTATCC 1 cut(s) 501
BclI TGATCA 1 cut(s) 241
BcoDI GTCTC 4 cut(s) 555, 845, 882, 973
BfaI CTAG 2 cut(s) 642, 902
BfmI CTRYAG 2 cut(s) 49, 362
BfuI GTATCC 1 cut(s) 501
BglI GCCNNNNNGGC 1 cut(s) 146
BisI GCNGC 3 cut(s) 200, 362, 1026
BlsI GCNGC 3 cut(s) 201, 363, 1027
Bme1390I CCNGG 1 cut(s) 619
Bme18I GGWCC 1 cut(s) 306
BmgT120I GGNCC 3 cut(s) 306, 320, 589
BmiI GGNNCC 2 cut(s) 1060, 1112
BmrFI CCNGG 1 cut(s) 619
BmsI GCATC 3 cut(s) 273, 545, 834
Bpu10I CCTNAGC 1 cut(s) 83
Bpu14I TTCGAA 1 cut(s) 653
BpuEI CTTGAG 3 cut(s) 362, 869, 1058
Bsa29I ATCGAT 1 cut(s) 99
BsaAI YACGTR 1 cut(s) 190
BsaHI GRCGYC 1 cut(s) 646
BsaI GGTCTC 1 cut(s) 973
BsaJI CCNNGG 3 cut(s) 585, 618, 689
BsaWI WCCGGW 1 cut(s) 633
BsaXI ACNNNNNCTCC 2 cut(s) 1080, 1110
Bsc4I CCNNNNNNNGG 4 cut(s) 500, 586, 618, 962
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 4 cut(s) 487, 516, 569, 895
BseBI CCWGG 1 cut(s) 619
BseCI ATCGAT 1 cut(s) 99
BseDI CCNNGG 3 cut(s) 585, 618, 689
BseGI GGATG 4 cut(s) 16, 396, 849, 1015
BseLI CCNNNNNNNGG 4 cut(s) 500, 586, 618, 962
BseMII CTCAG 4 cut(s) 74, 186, 395, 720
BseNI ACTGG 4 cut(s) 487, 516, 569, 895
BseRI GAGGAG 1 cut(s) 1085
BseXI GCAGC 3 cut(s) 211, 348, 1037
BshFI GGCC 4 cut(s) 5, 140, 322, 591
BshVI ATCGAT 1 cut(s) 99
BsiSI CCGG 3 cut(s) 141, 323, 634
BslFI GGGAC 1 cut(s) 710
BslI CCNNNNNNNGG 4 cut(s) 500, 586, 618, 962
BsmAI GTCTC 4 cut(s) 555, 845, 882, 973
BsmBI CGTCTC 1 cut(s) 845
BsmFI GGGAC 1 cut(s) 710
BsmI GAATGC 1 cut(s) 474
BsnI GGCC 4 cut(s) 5, 140, 322, 591
Bso31I GGTCTC 1 cut(s) 973
Bsp119I TTCGAA 1 cut(s) 653
Bsp1286I GDGCHC 2 cut(s) 1061, 1170
Bsp143I GATC 5 cut(s) 96, 241, 445, 570, 775
BspACI CCGC 3 cut(s) 120, 811, 1047
BspANI GGCC 4 cut(s) 5, 140, 322, 591
BspCNI CTCAG 4 cut(s) 75, 187, 396, 721
BspDI ATCGAT 1 cut(s) 99
BspLI GGNNCC 2 cut(s) 1060, 1112
BspMAI CTGCAG 2 cut(s) 53, 366
BspPI GGATC 1 cut(s) 565
BspT104I TTCGAA 1 cut(s) 653
BspTNI GGTCTC 1 cut(s) 973
BsrFI RCCGGY 1 cut(s) 140
BsrI ACTGG 4 cut(s) 487, 516, 569, 895
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 3 cut(s) 585, 618, 689
BssMI GATC 5 cut(s) 96, 241, 445, 570, 775
BssNI GRCGYC 1 cut(s) 646
BssSI CACGAG 1 cut(s) 603
BssT1I CCWWGG 1 cut(s) 689
Bst2BI CACGAG 1 cut(s) 603
Bst2UI CCWGG 1 cut(s) 619
Bst4CI ACNGT 1 cut(s) 1147
Bst6I CTCTTC 1 cut(s) 1119
BstACI GRCGYC 1 cut(s) 646
BstBAI YACGTR 1 cut(s) 190
BstBI TTCGAA 1 cut(s) 653
BstC8I GCNNGC 2 cut(s) 204, 708
BstDEI CTNAG 5 cut(s) 83, 195, 404, 729, 759
BstDSI CCRYGG 1 cut(s) 585
BstF5I GGATG 4 cut(s) 16, 396, 849, 1015
BstKTI GATC 5 cut(s) 99, 244, 448, 573, 778
BstMAI GTCTC 4 cut(s) 555, 845, 882, 973
BstMBI GATC 5 cut(s) 96, 241, 445, 570, 775
BstMWI GCNNNNNNNGC 2 cut(s) 57, 146
BstNI CCWGG 1 cut(s) 619
BstSCI CCNGG 1 cut(s) 617
BstSFI CTRYAG 2 cut(s) 49, 362
BstV1I GCAGC 3 cut(s) 211, 348, 1037
BstXI CCANNNNNNTGG 2 cut(s) 890, 1106
Bsu15I ATCGAT 1 cut(s) 99
BsuI GTATCC 1 cut(s) 501
BsuRI GGCC 4 cut(s) 5, 140, 322, 591
BsuTUI ATCGAT 1 cut(s) 99
BtgI CCRYGG 1 cut(s) 585
BtsCI GGATG 4 cut(s) 16, 396, 849, 1015
Cac8I GCNNGC 2 cut(s) 204, 708
CaiI CAGNNNCTG 1 cut(s) 618
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 3 cut(s) 306, 320, 589
ClaI ATCGAT 1 cut(s) 99
CseI GACGC 2 cut(s) 337, 635
Csp6I GTAC 2 cut(s) 283, 509
CviAII CATG 6 cut(s) 166, 383, 428, 593, 805, 815
CviQI GTAC 2 cut(s) 283, 509
DdeI CTNAG 5 cut(s) 83, 195, 404, 729, 759
DpnI GATC 5 cut(s) 98, 243, 447, 572, 777
DpnII GATC 5 cut(s) 96, 241, 445, 570, 775
EaeI YGGCCR 2 cut(s) 3, 138
Eam1104I CTCTTC 1 cut(s) 1119
EarI CTCTTC 1 cut(s) 1119
Eco130I CCWWGG 1 cut(s) 689
Eco24I GRGCYC 2 cut(s) 1061, 1170
Eco31I GGTCTC 1 cut(s) 973
Eco47I GGWCC 1 cut(s) 306
Eco57I CTGAAG 1 cut(s) 800
EcoO109I RGGNCCY 1 cut(s) 306
EcoRI GAATTC 1 cut(s) 1032
EcoRII CCWGG 1 cut(s) 617
EcoT14I CCWWGG 1 cut(s) 689
EcoT38I GRGCYC 2 cut(s) 1061, 1170
ErhI CCWWGG 1 cut(s) 689
Esp3I CGTCTC 1 cut(s) 845
FaeI CATG 6 cut(s) 169, 386, 431, 596, 808, 818
FalI AAGNNNNNCTT 2 cut(s) 28, 60
FaqI GGGAC 1 cut(s) 710
FatI CATG 6 cut(s) 165, 382, 427, 592, 804, 814
FauI CCCGC 2 cut(s) 127, 1040
FbaI TGATCA 1 cut(s) 241
Fnu4HI GCNGC 3 cut(s) 200, 362, 1026
FokI GGATG 4 cut(s) 3, 403, 856, 1022
FriOI GRGCYC 2 cut(s) 1061, 1170
Fsp4HI GCNGC 3 cut(s) 200, 362, 1026
FspBI CTAG 2 cut(s) 642, 902
GluI GCNGC 3 cut(s) 200, 362, 1026
HaeIII GGCC 4 cut(s) 5, 140, 322, 591
HapII CCGG 3 cut(s) 141, 323, 634
HgaI GACGC 2 cut(s) 337, 635
Hin1I GRCGYC 1 cut(s) 646
Hin1II CATG 6 cut(s) 169, 386, 431, 596, 808, 818
HincII GTYRAC 3 cut(s) 484, 769, 820
HindII GTYRAC 3 cut(s) 484, 769, 820
HinfI GANTC 6 cut(s) 379, 399, 856, 875, 894, 994
HpaII CCGG 3 cut(s) 141, 323, 634
HphI GGTGA 3 cut(s) 634, 689, 872
Hpy166II GTNNAC 3 cut(s) 484, 769, 820
Hpy188I TCNGA 5 cut(s) 222, 251, 575, 780, 931
Hpy188III TCNNGA 7 cut(s) 94, 396, 403, 465, 860, 956, 1037
Hpy8I GTNNAC 3 cut(s) 484, 769, 820
HpyAV CCTTC 3 cut(s) 19, 263, 906
HpyCH4III ACNGT 1 cut(s) 1147
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 6 cut(s) 51, 364, 374, 472, 686, 951
HpyF10VI GCNNNNNNNGC 2 cut(s) 57, 146
HpyF3I CTNAG 5 cut(s) 83, 195, 404, 729, 759
HpySE526I ACGT 1 cut(s) 189
Hsp92I GRCGYC 1 cut(s) 646
Hsp92II CATG 6 cut(s) 169, 386, 431, 596, 808, 818
Ksp22I TGATCA 1 cut(s) 241
Kzo9I GATC 5 cut(s) 96, 241, 445, 570, 775
LmnI GCTCC 2 cut(s) 419, 1064
Lsp1109I GCAGC 3 cut(s) 211, 348, 1037
LweI GCATC 3 cut(s) 273, 545, 834
MaeI CTAG 2 cut(s) 642, 902
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 190
MalI GATC 5 cut(s) 98, 243, 447, 572, 777
MboI GATC 5 cut(s) 96, 241, 445, 570, 775
MboII GAAGA 5 cut(s) 36, 556, 971, 1136, 1165
MfeI CAATTG 1 cut(s) 1076
MhlI GDGCHC 2 cut(s) 1061, 1170
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 495, 1032, 1076
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 393, 884
MmeI TCCRAC 3 cut(s) 245, 274, 726
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 72, 1116
MslI CAYNNNNRTG 2 cut(s) 164, 620
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 1028
MspI CCGG 3 cut(s) 141, 323, 634
MspR9I CCNGG 1 cut(s) 619
MunI CAATTG 1 cut(s) 1076
Mva1269I GAATGC 1 cut(s) 474
MvaI CCWGG 1 cut(s) 619
MwoI GCNNNNNNNGC 2 cut(s) 57, 146
NdeII GATC 5 cut(s) 96, 241, 445, 570, 775
NlaIII CATG 6 cut(s) 169, 386, 431, 596, 808, 818
NlaIV GGNNCC 2 cut(s) 1060, 1112
NmuCI GTSAC 1 cut(s) 190
NspV TTCGAA 1 cut(s) 653
OliI CACNNNNGTG 1 cut(s) 620
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PctI GAATGC 1 cut(s) 474
PfeI GAWTC 4 cut(s) 379, 856, 894, 994
PflFI GACNNNGTC 1 cut(s) 722
PflMI CCANNNNNTGG 2 cut(s) 618, 962
PkrI GCNGC 3 cut(s) 201, 363, 1027
PleI GAGTC 2 cut(s) 393, 883
PpsI GAGTC 2 cut(s) 393, 883
Ppu21I YACGTR 1 cut(s) 190
PpuMI RGGWCCY 1 cut(s) 306
Psp5II RGGWCCY 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 617
PspGI CCWGG 1 cut(s) 617
PspN4I GGNNCC 2 cut(s) 1060, 1112
PspPI GGNCC 3 cut(s) 306, 320, 589
PspPPI RGGWCCY 1 cut(s) 306
PstI CTGCAG 2 cut(s) 53, 366
PstNI CAGNNNCTG 1 cut(s) 618
PsyI GACNNNGTC 1 cut(s) 722
PvuII CAGCTG 1 cut(s) 1028
RsaI GTAC 2 cut(s) 284, 510
RsaNI GTAC 2 cut(s) 283, 509
RseI CAYNNNNRTG 2 cut(s) 164, 620
SaqAI TTAA 2 cut(s) 72, 1116
SatI GCNGC 3 cut(s) 200, 362, 1026
Sau3AI GATC 5 cut(s) 96, 241, 445, 570, 775
Sau96I GGNCC 3 cut(s) 306, 320, 589
SchI GAGTC 2 cut(s) 393, 884
ScrFI CCNGG 1 cut(s) 619
SduI GDGCHC 2 cut(s) 1061, 1170
SfaNI GCATC 3 cut(s) 273, 545, 834
SfcI CTRYAG 2 cut(s) 49, 362
SfuI TTCGAA 1 cut(s) 653
SinI GGWCC 1 cut(s) 306
SmiMI CAYNNNNRTG 2 cut(s) 164, 620
SmlI CTYRAG 3 cut(s) 341, 848, 1037
SmoI CTYRAG 3 cut(s) 341, 848, 1037
Sse9I AATT 3 cut(s) 495, 1032, 1076
SsiI CCGC 3 cut(s) 120, 811, 1047
SspMI CTAG 2 cut(s) 642, 902
StyD4I CCNGG 1 cut(s) 617
StyI CCWWGG 1 cut(s) 689
TaaI ACNGT 1 cut(s) 1147
TaiI ACGT 1 cut(s) 192
TaqI TCGA 5 cut(s) 99, 267, 519, 653, 1135
TaqII GACCGA 1 cut(s) 997
TasI AATT 3 cut(s) 495, 1032, 1076
TfiI GAWTC 4 cut(s) 379, 856, 894, 994
Tru1I TTAA 2 cut(s) 72, 1116
Tru9I TTAA 2 cut(s) 72, 1116
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 3 cut(s) 199, 361, 1025
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 8 cut(s) 78, 444, 569, 644, 685, 821, 961, 1137
TspGWI ACGGA 2 cut(s) 226, 1156
Tth111I GACNNNGTC 1 cut(s) 722
Van91I CCANNNNNTGG 2 cut(s) 618, 962
VpaK11BI GGWCC 1 cut(s) 306
XapI RAATTY 1 cut(s) 1032
XspI CTAG 2 cut(s) 642, 902
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.