FvH4_4g32502

Domain in histone families 1 and 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0013660
Physical Location & Seq
Reverse (-)
31164933 .. 31166774
1842 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g32502.t1

Sequence Viewer

Length: 1269 bp
ATGGCAATCCCAAAACCTCAGCAACCCCTTCAGCTTTGTCCTCAAAACCTCGAACAACAGAGGCAAGAACGCATAATGTGCAAGCTAAGAGACGCCGTTTTGGCACGTGCGGGGGCTGCCAGAGCCACCAACGTCGCCGTCGTTGAACGCCGCATCCAGCAGCTCATCCCTAGTTTCTACACTCCCTCTCATCCTCCTTATGCCTTGATGATACAGAGGGCAATAGAGGAGTTGAATGAGGAAGGAGGGGTGAGTGGGGTTAACATATCAGAATTTATCAAAAAGGAATATGAGGATTTGCCATGGGCGCATGAGGGTATGTTGAGGCTTCATTTGAAGAAGCAATGTGAGATGGGGGTGCTTGTGTTGGATGGTGGGAGGTACAATTTTAATTTGGTTAAGGATGGTGATGATGTGGGTTCTGTTGATGTTGAGACAGTATCGAGGAGGAAAAGGCGGCCGGGGAAGGGTAGAAGAGGCCGGGATAGATGGCGTGGCAGGGAAGAAGGGAAGCTGAATAATGAAGCATTTGAAGAAGAGGAAATTGAAGGAGGAGAAGGCCAGAATGAGAGGCCAAGCATGGATGAGGTGGAGAAGGCAGTACTAGCATATGTAAAATTGCATAACCAGGGAGAAGCAAAGAAAGATGAGATGATACGGAAACCTATTCAAGCAGAGGTGGGTGAAGATGAAGTAGTAAAACACAATAATCAAAGAGAAGAACAACAGAGTGGAGAGGAGCCACAATCTCAGCGACAAACAGCAGGCAAAGAAAAACGGCGTCCAGGGAGACCTAAAGCTAATAAAGTTATGGCATTGGTGCCCTATGTTCCTGAGGAGCAGCCACCAAGGCGTCGAGGGAGATCAAAAGCTAAAAATGATATGGATTTAGGTACGAATGCTGAATTACCGTGTGATGTTGAACCTCTTAATGAGAAGCAGCCTCAGAGGCATCGAGGGAAGTCTAGAGCTATATATGATACGGAGGCAAGTACTACTAGTGAAGTACCTTGTGCTCTTGAAAATCCACACGCTGAGCAGCCACTGAAGCGACGAAGCCCTGGGAGACCTCCTAAACCAAAGCCACATACAGAAACCACCCTGACAGTTCTATCAAGCTCAGATATTCAGCATCACTCTAAGCCTAAGCAACAGCAGCCCCCAAACCAAGCAACTAACATGAGGTTCTCTAAACCGAAGCGAGGCAGAGGAAATCTCGAACCCTCAGAAACTGATATGCTGCAGCTGCAATCACACAGTCGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone

Protein Analysis

423

Amino Acids

47.98

Weight (kDa)

9.0

Isoelectric Point (pI)

67.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Linker_histone PF00538 64 - 123 2.9e-08 linker histone H1 and H5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 820
AciI CCGC 3 cut(s) 110, 151, 457
AcoI YGGCCR 1 cut(s) 458
AcsI RAATTY 1 cut(s) 272
AcuI CTGAAG 2 cut(s) 14, 1067
AcvI CACGTG 1 cut(s) 107
AcyI GRCGYC 3 cut(s) 93, 781, 853
AfaI GTAC 5 cut(s) 383, 603, 895, 994, 1008
AfiI CCNNNNNNNGG 2 cut(s) 467, 1202
AgsI TTSAA 8 cut(s) 146, 235, 337, 533, 548, 671, 923, 1022
AhlI ACTAGT 1 cut(s) 998
AjnI CCWGG 3 cut(s) 627, 784, 1060
AloI GAACNNNNNNTCC 2 cut(s) 138, 170
AluBI AGCT 9 cut(s) 34, 85, 163, 514, 800, 872, 971, 1119, 1246
AluI AGCT 9 cut(s) 34, 85, 163, 514, 800, 872, 971, 1119, 1246
Alw21I GWGCWC 1 cut(s) 1018
Alw26I GTCTC 4 cut(s) 84, 428, 784, 1060
AlwNI CAGNNNCTG 2 cut(s) 1045, 1232
AoxI GGCC 4 cut(s) 458, 478, 559, 572
ApeKI GCWGC 9 cut(s) 116, 160, 841, 940, 1039, 1156, 1240, 1243, 1246
ApoI RAATTY 1 cut(s) 272
AspLEI GCGC 1 cut(s) 310
AsuC2I CCSGG 2 cut(s) 462, 482
AsuHPI GGTGA 3 cut(s) 262, 419, 695
AxyI CCTNAGG 1 cut(s) 834
BaeGI GKGCMC 1 cut(s) 825
BanI GGYRCC 1 cut(s) 820
BbrPI CACGTG 1 cut(s) 107
Bbv12I GWGCWC 1 cut(s) 1018
BbvCI CCTCAGC 1 cut(s) 18
BbvI GCAGC 9 cut(s) 103, 172, 853, 952, 1051, 1168, 1227, 1233, 1255
BccI CCATC 4 cut(s) 346, 365, 398, 483
BceAI ACGGC 3 cut(s) 80, 122, 794
BciT130I CCWGG 3 cut(s) 629, 786, 1062
BcnI CCSGG 2 cut(s) 462, 482
BcoDI GTCTC 4 cut(s) 84, 428, 784, 1060
BcuI ACTAGT 1 cut(s) 998
BfaI CTAG 4 cut(s) 171, 605, 966, 999
BfmI CTRYAG 1 cut(s) 1241
BglI GCCNNNNNGGC 3 cut(s) 101, 850, 949
BlpI GCTNAGC 1 cut(s) 1035
BmcAI AGTACT 2 cut(s) 603, 994
Bme1390I CCNGG 5 cut(s) 462, 482, 629, 786, 1062
BmiI GGNNCC 2 cut(s) 741, 822
BmrFI CCNGG 5 cut(s) 462, 482, 629, 786, 1062
BmsI GCATC 3 cut(s) 162, 961, 1141
BplI GAGNNNNNCTC 2 cut(s) 1200, 1232
Bpu10I CCTNAGC 2 cut(s) 18, 1146
Bpu1102I GCTNAGC 1 cut(s) 1035
BpuMI CCSGG 2 cut(s) 462, 482
BsaAI YACGTR 1 cut(s) 107
BsaHI GRCGYC 3 cut(s) 93, 781, 853
BsaI GGTCTC 2 cut(s) 784, 1060
BsaJI CCNNGG 7 cut(s) 302, 461, 628, 785, 848, 1060, 1061
Bsc4I CCNNNNNNNGG 2 cut(s) 467, 1202
Bse21I CCTNAGG 1 cut(s) 834
Bse3DI GCAATG 1 cut(s) 350
BseBI CCWGG 3 cut(s) 629, 786, 1062
BseDI CCNNGG 7 cut(s) 302, 461, 628, 785, 848, 1060, 1061
BseGI GGATG 6 cut(s) 153, 165, 190, 376, 409, 589
BseLI CCNNNNNNNGG 2 cut(s) 467, 1202
BseMI GCAATG 1 cut(s) 350
BseMII CTCAG 7 cut(s) 32, 764, 825, 959, 1026, 1134, 1239
BseRI GAGGAG 5 cut(s) 242, 460, 567, 752, 851
BseSI GKGCMC 1 cut(s) 825
BseX3I CGGCCG 1 cut(s) 458
BseXI GCAGC 9 cut(s) 103, 172, 853, 952, 1051, 1168, 1227, 1233, 1255
Bsh1285I CGRYCG 1 cut(s) 461
BshFI GGCC 4 cut(s) 460, 480, 561, 574
BshNI GGYRCC 1 cut(s) 820
BsiEI CGRYCG 1 cut(s) 461
BsiHKAI GWGCWC 1 cut(s) 1018
BsiSI CCGG 2 cut(s) 461, 481
BslI CCNNNNNNNGG 2 cut(s) 467, 1202
BsmAI GTCTC 4 cut(s) 84, 428, 784, 1060
BsmBI CGTCTC 1 cut(s) 84
BsmI GAATGC 1 cut(s) 904
BsnI GGCC 4 cut(s) 460, 480, 561, 574
Bso31I GGTCTC 2 cut(s) 784, 1060
Bsp1286I GDGCHC 2 cut(s) 825, 1018
Bsp143I GATC 1 cut(s) 863
Bsp1720I GCTNAGC 1 cut(s) 1035
Bsp19I CCATGG 1 cut(s) 302
BspACI CCGC 3 cut(s) 110, 151, 457
BspANI GGCC 4 cut(s) 460, 480, 561, 574
BspCNI CTCAG 7 cut(s) 31, 763, 826, 958, 1027, 1133, 1238
BspLI GGNNCC 2 cut(s) 741, 822
BspMAI CTGCAG 1 cut(s) 1245
BspT107I GGYRCC 1 cut(s) 820
BspTNI GGTCTC 2 cut(s) 784, 1060
BsrDI GCAATG 1 cut(s) 350
BssECI CCNNGG 7 cut(s) 302, 461, 628, 785, 848, 1060, 1061
BssMI GATC 1 cut(s) 863
BssNI GRCGYC 3 cut(s) 93, 781, 853
BssT1I CCWWGG 2 cut(s) 302, 848
Bst2UI CCWGG 3 cut(s) 629, 786, 1062
Bst4CI ACNGT 4 cut(s) 439, 912, 1108, 1259
Bst6I CTCTTC 2 cut(s) 469, 531
BstACI GRCGYC 3 cut(s) 93, 781, 853
BstAPI GCANNNNNTGC 1 cut(s) 78
BstBAI YACGTR 1 cut(s) 107
BstC8I GCNNGC 2 cut(s) 83, 766
BstDSI CCRYGG 1 cut(s) 302
BstF5I GGATG 6 cut(s) 153, 165, 190, 376, 409, 589
BstHHI GCGC 1 cut(s) 310
BstKTI GATC 1 cut(s) 866
BstMAI GTCTC 4 cut(s) 84, 428, 784, 1060
BstMBI GATC 1 cut(s) 863
BstMCI CGRYCG 1 cut(s) 461
BstNI CCWGG 3 cut(s) 629, 786, 1062
BstSCI CCNGG 5 cut(s) 460, 480, 627, 784, 1060
BstSFI CTRYAG 1 cut(s) 1241
BstSLI GKGCMC 1 cut(s) 825
BstV1I GCAGC 9 cut(s) 103, 172, 853, 952, 1051, 1168, 1227, 1233, 1255
BstZI CGGCCG 1 cut(s) 458
Bsu36I CCTNAGG 1 cut(s) 834
BsuRI GGCC 4 cut(s) 460, 480, 561, 574
BtgI CCRYGG 1 cut(s) 302
BtsCI GGATG 6 cut(s) 153, 165, 190, 376, 409, 589
BtsIMutI CAGTG 1 cut(s) 1043
Cac8I GCNNGC 2 cut(s) 83, 766
CaiI CAGNNNCTG 2 cut(s) 1045, 1232
CfoI GCGC 1 cut(s) 310
CseI GACGC 3 cut(s) 101, 770, 842
Csp6I GTAC 5 cut(s) 382, 602, 894, 993, 1007
CviAII CATG 4 cut(s) 303, 311, 580, 1180
CviQI GTAC 5 cut(s) 382, 602, 894, 993, 1007
DpnI GATC 1 cut(s) 865
DpnII GATC 1 cut(s) 863
EaeI YGGCCR 1 cut(s) 458
EagI CGGCCG 1 cut(s) 458
Eam1104I CTCTTC 2 cut(s) 469, 531
EarI CTCTTC 2 cut(s) 469, 531
EclXI CGGCCG 1 cut(s) 458
Eco130I CCWWGG 2 cut(s) 302, 848
Eco31I GGTCTC 2 cut(s) 784, 1060
Eco52I CGGCCG 1 cut(s) 458
Eco57I CTGAAG 2 cut(s) 14, 1067
Eco72I CACGTG 1 cut(s) 107
Eco81I CCTNAGG 1 cut(s) 834
EcoRII CCWGG 3 cut(s) 627, 784, 1060
EcoT14I CCWWGG 2 cut(s) 302, 848
ErhI CCWWGG 2 cut(s) 302, 848
Esp3I CGTCTC 1 cut(s) 84
FaeI CATG 4 cut(s) 306, 314, 583, 1183
FatI CATG 4 cut(s) 302, 310, 579, 1179
FauI CCCGC 1 cut(s) 103
FauNDI CATATG 1 cut(s) 610
FokI GGATG 6 cut(s) 140, 152, 177, 383, 416, 596
FspBI CTAG 4 cut(s) 171, 605, 966, 999
GlaI GCGC 1 cut(s) 309
HaeIII GGCC 4 cut(s) 460, 480, 561, 574
HapII CCGG 2 cut(s) 461, 481
HgaI GACGC 3 cut(s) 101, 770, 842
HhaI GCGC 1 cut(s) 310
Hin1I GRCGYC 3 cut(s) 93, 781, 853
Hin1II CATG 4 cut(s) 306, 314, 583, 1183
Hin6I GCGC 1 cut(s) 308
HinP1I GCGC 1 cut(s) 308
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HpaI GTTAAC 1 cut(s) 262
HpaII CCGG 2 cut(s) 461, 481
HphI GGTGA 3 cut(s) 262, 419, 695
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 4 cut(s) 271, 948, 1123, 1228
Hpy188III TCNNGA 5 cut(s) 833, 966, 1019, 1217, 1262
Hpy8I GTNNAC 1 cut(s) 262
Hpy99I CGWCG 4 cut(s) 137, 143, 858, 1056
HpyAV CCTTC 7 cut(s) 38, 236, 460, 500, 542, 551, 589
HpyCH4III ACNGT 4 cut(s) 439, 912, 1108, 1259
HpyCH4IV ACGT 2 cut(s) 106, 132
HpyCH4V TGCA 4 cut(s) 81, 622, 1243, 1249
HpySE526I ACGT 2 cut(s) 106, 132
Hsp92I GRCGYC 3 cut(s) 93, 781, 853
Hsp92II CATG 4 cut(s) 306, 314, 583, 1183
HspAI GCGC 1 cut(s) 308
KspAI GTTAAC 1 cut(s) 262
Kzo9I GATC 1 cut(s) 863
LmnI GCTCC 2 cut(s) 739, 838
Lsp1109I GCAGC 9 cut(s) 103, 172, 853, 952, 1051, 1168, 1227, 1233, 1255
LweI GCATC 3 cut(s) 162, 961, 1141
MaeI CTAG 4 cut(s) 171, 605, 966, 999
MaeII ACGT 2 cut(s) 106, 132
MalI GATC 1 cut(s) 865
MboI GATC 1 cut(s) 863
MboII GAAGA 7 cut(s) 349, 486, 515, 545, 548, 698, 731
MhlI GDGCHC 2 cut(s) 825, 1018
MluCI AATT 6 cut(s) 272, 385, 391, 543, 617, 905
MmeI TCCRAC 1 cut(s) 348
MseI TTAA 4 cut(s) 261, 390, 399, 930
MspA1I CMGCKG 1 cut(s) 1246
MspI CCGG 2 cut(s) 461, 481
MspR9I CCNGG 5 cut(s) 462, 482, 629, 786, 1062
Mva1269I GAATGC 1 cut(s) 904
MvaI CCWGG 3 cut(s) 629, 786, 1062
NciI CCSGG 2 cut(s) 462, 482
NcoI CCATGG 1 cut(s) 302
NdeI CATATG 1 cut(s) 610
NdeII GATC 1 cut(s) 863
NlaIII CATG 4 cut(s) 306, 314, 583, 1183
NlaIV GGNNCC 2 cut(s) 741, 822
PasI CCCWGGG 1 cut(s) 1061
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PctI GAATGC 1 cut(s) 904
PmaCI CACGTG 1 cut(s) 107
PmlI CACGTG 1 cut(s) 107
Ppu21I YACGTR 1 cut(s) 107
Psp6I CCWGG 3 cut(s) 627, 784, 1060
PspCI CACGTG 1 cut(s) 107
PspGI CCWGG 3 cut(s) 627, 784, 1060
PspN4I GGNNCC 2 cut(s) 741, 822
PstI CTGCAG 1 cut(s) 1245
PstNI CAGNNNCTG 2 cut(s) 1045, 1232
PvuII CAGCTG 1 cut(s) 1246
RsaI GTAC 5 cut(s) 383, 603, 895, 994, 1008
RsaNI GTAC 5 cut(s) 382, 602, 894, 993, 1007
SaqAI TTAA 4 cut(s) 261, 390, 399, 930
Sau3AI GATC 1 cut(s) 863
ScaI AGTACT 2 cut(s) 603, 994
ScrFI CCNGG 5 cut(s) 462, 482, 629, 786, 1062
SduI GDGCHC 2 cut(s) 825, 1018
SfaNI GCATC 3 cut(s) 162, 961, 1141
SfcI CTRYAG 1 cut(s) 1241
SpeI ACTAGT 1 cut(s) 998
Sse9I AATT 6 cut(s) 272, 385, 391, 543, 617, 905
SsiI CCGC 3 cut(s) 110, 151, 457
SspMI CTAG 4 cut(s) 171, 605, 966, 999
StyD4I CCNGG 5 cut(s) 460, 480, 627, 784, 1060
StyI CCWWGG 2 cut(s) 302, 848
TaaI ACNGT 4 cut(s) 439, 912, 1108, 1259
TaiI ACGT 2 cut(s) 109, 135
TaqI TCGA 6 cut(s) 51, 443, 856, 955, 1218, 1261
TasI AATT 6 cut(s) 272, 385, 391, 543, 617, 905
TatI WGTACW 2 cut(s) 601, 992
TauI GCSGC 2 cut(s) 153, 460
Tru1I TTAA 4 cut(s) 261, 390, 399, 930
Tru9I TTAA 4 cut(s) 261, 390, 399, 930
TscAI CASTG 1 cut(s) 1050
TseI GCWGC 9 cut(s) 116, 160, 841, 940, 1039, 1156, 1240, 1243, 1246
TspDTI ATGAA 3 cut(s) 320, 537, 705
TspGWI ACGGA 2 cut(s) 673, 998
TspRI CASTG 1 cut(s) 1050
XapI RAATTY 1 cut(s) 272
XbaI TCTAGA 1 cut(s) 965
XspI CTAG 4 cut(s) 171, 605, 966, 999
ZrmI AGTACT 2 cut(s) 603, 994
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.