RLG00000005431

Domain in histone families 1 and 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0013660
Physical Location & Seq
Reverse (-)
67590152 .. 67590576
425 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005431

Sequence Viewer

Length: 321 bp
ATGGAACAAGAGGGATGCAGCAGCAACTTCACCAGTAGCAGTATCAGAAGGTTCAGAGAACTAATTGCTAGGTCGAAACAGAACCCAGATCACCCACCATCCTCTGAGATGATATTGAAAGCGATTGAATCATTGAATAATGAGGAAGAAGGTAACCTAATCAACAAAGGTCATATATCCGCCTACATTAAGTCAGAGTTCCATGACCTGCCTTGGGCTCATGAAAGCCTTCTTTCTCACCATCTAGGCAAGCTCATTCTCAGAGGCCAGGTTCTTATTAGTTCTACTGGTTCTTACCGGCTTCCGAAACCAAAAACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.97

Weight (kDa)

7.96

Isoelectric Point (pI)

56.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 216
AciI CCGC 1 cut(s) 180
AfiI CCNNNNNNNGG 1 cut(s) 214
AgsI TTSAA 3 cut(s) 118, 128, 136
AjnI CCWGG 1 cut(s) 267
AluBI AGCT 1 cut(s) 253
AluI AGCT 1 cut(s) 253
AoxI GGCC 1 cut(s) 265
ApeKI GCWGC 2 cut(s) 18, 21
Asp700I GAANNNNTTC 1 cut(s) 228
AsuHPI GGTGA 3 cut(s) 22, 83, 230
BanII GRGCYC 1 cut(s) 220
BbvI GCAGC 2 cut(s) 30, 33
BccI CCATC 2 cut(s) 106, 249
BciT130I CCWGG 1 cut(s) 269
BfaI CTAG 2 cut(s) 69, 245
BfuAI ACCTGC 1 cut(s) 216
BisI GCNGC 2 cut(s) 19, 22
BlsI GCNGC 2 cut(s) 20, 23
Bme1390I CCNGG 1 cut(s) 269
BmrFI CCNGG 1 cut(s) 269
BmsI GCATC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 212
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse118I RCCGGY 1 cut(s) 297
Bse1I ACTGG 2 cut(s) 33, 292
BseBI CCWGG 1 cut(s) 269
BseDI CCNNGG 1 cut(s) 212
BseGI GGATG 2 cut(s) 20, 98
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMII CTCAG 2 cut(s) 96, 274
BseNI ACTGG 2 cut(s) 33, 292
BseXI GCAGC 2 cut(s) 30, 33
BshFI GGCC 1 cut(s) 267
BsiSI CCGG 1 cut(s) 298
BslI CCNNNNNNNGG 1 cut(s) 214
BsnI GGCC 1 cut(s) 267
Bsp1286I GDGCHC 1 cut(s) 220
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 1 cut(s) 180
BspANI GGCC 1 cut(s) 267
BspCNI CTCAG 2 cut(s) 97, 273
BspHI TCATGA 1 cut(s) 220
BspMI ACCTGC 1 cut(s) 216
BsrFI RCCGGY 1 cut(s) 297
BsrI ACTGG 2 cut(s) 33, 292
BssAI RCCGGY 1 cut(s) 297
BssECI CCNNGG 1 cut(s) 212
BssMI GATC 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 212
Bst2UI CCWGG 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 251
BstDEI CTNAG 2 cut(s) 105, 260
BstEII GGTNACC 1 cut(s) 152
BstF5I GGATG 2 cut(s) 20, 98
BstKTI GATC 1 cut(s) 91
BstMBI GATC 1 cut(s) 88
BstNI CCWGG 1 cut(s) 269
BstPI GGTNACC 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 267
BstV1I GCAGC 2 cut(s) 30, 33
BsuRI GGCC 1 cut(s) 267
BtsCI GGATG 2 cut(s) 20, 98
BveI ACCTGC 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 251
CciI TCATGA 1 cut(s) 220
Cfr10I RCCGGY 1 cut(s) 297
CviAII CATG 2 cut(s) 203, 221
CviJI RGCY 5 cut(s) 218, 228, 253, 267, 301
CviKI_1 RGCY 5 cut(s) 218, 228, 253, 267, 301
DdeI CTNAG 2 cut(s) 105, 260
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
EciI GGCGGA 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 212
Eco24I GRGCYC 1 cut(s) 220
Eco91I GGTNACC 1 cut(s) 152
EcoO65I GGTNACC 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 267
EcoT14I CCWWGG 1 cut(s) 212
EcoT38I GRGCYC 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 212
FaeI CATG 2 cut(s) 206, 224
FaiI YATR 4 cut(s) 174, 176, 204, 222
FatI CATG 2 cut(s) 202, 220
Fnu4HI GCNGC 2 cut(s) 19, 22
FokI GGATG 2 cut(s) 27, 85
FriOI GRGCYC 1 cut(s) 220
Fsp4HI GCNGC 2 cut(s) 19, 22
FspBI CTAG 2 cut(s) 69, 245
GluI GCNGC 2 cut(s) 19, 22
HaeIII GGCC 1 cut(s) 267
HapII CCGG 1 cut(s) 298
Hin1II CATG 2 cut(s) 206, 224
HinfI GANTC 1 cut(s) 128
HpaII CCGG 1 cut(s) 298
HphI GGTGA 3 cut(s) 22, 83, 230
Hpy188I TCNGA 6 cut(s) 47, 56, 106, 196, 263, 306
Hpy188III TCNNGA 1 cut(s) 221
HpyAV CCTTC 3 cut(s) 42, 143, 239
HpyCH4IV ACGT 1 cut(s) 317
HpyCH4V TGCA 1 cut(s) 18
HpyF3I CTNAG 2 cut(s) 105, 260
HpySE526I ACGT 1 cut(s) 317
Hsp92II CATG 2 cut(s) 206, 224
Kzo9I GATC 1 cut(s) 88
LpnPI CCDG 7 cut(s) 46, 99, 221, 254, 273, 281, 311
Lsp1109I GCAGC 2 cut(s) 30, 33
LweI GCATC 1 cut(s) 5
MaeI CTAG 2 cut(s) 69, 245
MaeII ACGT 1 cut(s) 317
MaeIII GTNAC 1 cut(s) 152
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 1 cut(s) 158
MhlI GDGCHC 1 cut(s) 220
MluCI AATT 1 cut(s) 63
MnlI CCTC 4 cut(s) 4, 112, 136, 257
MroXI GAANNNNTTC 1 cut(s) 228
MseI TTAA 1 cut(s) 189
MspI CCGG 1 cut(s) 298
MspR9I CCNGG 1 cut(s) 269
MvaI CCWGG 1 cut(s) 269
NdeII GATC 1 cut(s) 88
NlaIII CATG 2 cut(s) 206, 224
PagI TCATGA 1 cut(s) 220
PdmI GAANNNNTTC 1 cut(s) 228
PfeI GAWTC 1 cut(s) 128
PkrI GCNGC 2 cut(s) 20, 23
Psp6I CCWGG 1 cut(s) 267
PspEI GGTNACC 1 cut(s) 152
PspGI CCWGG 1 cut(s) 267
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 2 cut(s) 19, 22
Sau3AI GATC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 269
SduI GDGCHC 1 cut(s) 220
SetI ASST 9 cut(s) 53, 74, 154, 159, 172, 210, 255, 273, 320
SfaNI GCATC 1 cut(s) 5
Sse9I AATT 1 cut(s) 63
SsiI CCGC 1 cut(s) 180
SspMI CTAG 2 cut(s) 69, 245
StyD4I CCNGG 1 cut(s) 267
StyI CCWWGG 1 cut(s) 212
TaiI ACGT 1 cut(s) 320
TaqI TCGA 1 cut(s) 74
TasI AATT 1 cut(s) 63
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TseI GCWGC 2 cut(s) 18, 21
TspDTI ATGAA 1 cut(s) 237
XmnI GAANNNNTTC 1 cut(s) 228
XspI CTAG 2 cut(s) 69, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.