Rroxscaffold_5G00382260

Domain in histone families 1 and 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0013660
Physical Location & Seq
Reverse (-)
62084273 .. 62091810
7538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00382260.1

Sequence Viewer

Length: 1317 bp
ATGGCAATCCCAAAACCTCAGCATCCCCTTCAGCTTTGTCTGCAAAACTTGGAACAGCAAAGGCAAGAACGCATAATGTGCAAACTCCGAGACGCCGTTTTGGTACGTGTGGCGGCGGCGGAGGCAGGACCCTCCAAACCCATGAACACCGCCGACCACATTAACCCCGGCGTCGAACGCCGCCTCCAACAGCTCTTCCCTAGTGTCTACACTCCCACTCATCCGCCTTATGCCTCGATGATACAAAGGGCAATAGAGGAGTTGAATGAGGAAGGAGGAGGTGTGAGCGAGGTTGCAATATCGAAGTTTATCAAAAGGGAATACGAGGATTTGCCGTGGGCTTATGAGAGTCTGTTGAGGCTTCATTTGAAGAAGCAATGTGAGATTGGGGTGCTTGTGTTAGATGGTGGGAGGTATAATTTTAATTTGGTTGAGGATGCTGATGGTGGGGCTTCTGTTGATGTCGAGACAGAGTCGAGGAGGAGAAGGCGGCCGGGGCGGGGTAGAAGAGGCCGGGGTAGATGGCGTGGCAGGGAAGAAGCGGAGCGGATTAATGAAGCATTTGAAGAAGAGGGGATTGAAGGAGGAGAAGGCCAAGATGAGGTGATGGGACAATCTGAGAGGCCAAACATGGATGAGGTGGAAAAGGCATTACTGGCATATATCAAATCGCATAACTGGGGAGAAGCAAACGAAGATGAGATGATAAAAGAACAGATTCGAGCAGCGGTGGGTGAAGATGAAGTTATAAAAAACAATAAGCAAAGAGAAGAACAGCAAAGTGGAGAGGAGCCACAATCTCAGCATGATCAGCAACGACAGAAATCACAAGAACAAGGACAAGTAAAGCGGCGTCCAGGGAGACCTAAAGCTAATAAAGTTGGGGATGTAGGTACTCTGGAAGTGGTACCCTGTGCTCCTGAGGAGCAGCCTTTGAGGCGTCGAGGGAGATCAAAAGCTAAAAATGATATGGATTTAGGTACCAATGCCGTAGTACCCTGTGCTGTTGAACCTCCTAATCAGGAGCAGCCCCAGAAGCGTCGAGGGAGGTCTAAAGCTAAACATGATATGGAGGCAAGTACTAGTAGTCTAGTACCTTGTGCTCTTGAACATCGACAGGAAGAGCAGCCACCGAAGCGACGAGGCCCAGGGAGACCTCCAAAACCAAAGCCAGATTCAGAAGCTACCTTGACAGTTTTGTCAGGCTCAGATATTCCGCATCACTCTAAGCAACAACAGCCCGTGAGCCAAGCAACTAAGATGAGGTTTTCTAAACCAAAGCGAGGCAGAGGGAGGCCTCGAACCCTCAGAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone

Protein Analysis

438

Amino Acids

49.51

Weight (kDa)

8.99

Isoelectric Point (pI)

72.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Linker_histone PF00538 74 - 134 2.4e-10 linker histone H1 and H5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 749
AasI GACNNNNNNGTC 1 cut(s) 1198
Acc65I GGTACC 2 cut(s) 907, 980
AccB1I GGYRCC 2 cut(s) 907, 980
AccBSI CCGCTC 1 cut(s) 547
AccI GTMKAC 1 cut(s) 207
AcoI YGGCCR 1 cut(s) 491
AcuI CTGAAG 1 cut(s) 14
AcyI GRCGYC 4 cut(s) 93, 171, 853, 940
AfaI GTAC 7 cut(s) 105, 895, 909, 982, 996, 1081, 1095
AfiI CCNNNNNNNGG 3 cut(s) 500, 601, 1283
AflIII ACRYGT 1 cut(s) 106
AgsI TTSAA 6 cut(s) 265, 370, 566, 581, 1010, 1109
AhlI ACTAGT 1 cut(s) 1082
AjnI CCWGG 2 cut(s) 856, 1147
AjuI GAANNNNNNNTTGG 2 cut(s) 1159, 1191
AloI GAACNNNNNNTCC 2 cut(s) 168, 200
AluBI AGCT 6 cut(s) 34, 193, 872, 959, 1058, 1184
AluI AGCT 6 cut(s) 34, 193, 872, 959, 1058, 1184
Alw21I GWGCWC 2 cut(s) 919, 1105
Alw26I GTCTC 4 cut(s) 84, 461, 856, 1147
AlwNI CAGNNNCTG 1 cut(s) 1314
AoxI GGCC 6 cut(s) 491, 511, 592, 623, 1144, 1295
ApeKI GCWGC 4 cut(s) 725, 928, 1027, 1126
AseI ATTAAT 1 cut(s) 552
Asp700I GAANNNNTTC 1 cut(s) 717
Asp718I GGTACC 2 cut(s) 907, 980
AspS9I GGNCC 2 cut(s) 128, 1145
AsuC2I CCSGG 3 cut(s) 168, 495, 515
AsuHPI GGTGA 2 cut(s) 616, 746
AvaII GGWCC 1 cut(s) 128
AxyI CCTNAGG 1 cut(s) 921
BanI GGYRCC 2 cut(s) 907, 980
Bbv12I GWGCWC 2 cut(s) 919, 1105
BbvCI CCTCAGC 1 cut(s) 18
BbvI GCAGC 4 cut(s) 737, 940, 1039, 1138
BccI CCATC 4 cut(s) 398, 437, 516, 601
BceAI ACGGC 3 cut(s) 80, 319, 974
BciT130I CCWGG 2 cut(s) 858, 1149
BclI TGATCA 1 cut(s) 808
BcnI CCSGG 3 cut(s) 168, 495, 515
BcoDI GTCTC 4 cut(s) 84, 461, 856, 1147
BcuI ACTAGT 1 cut(s) 1082
BfaI CTAG 3 cut(s) 201, 1083, 1091
BglI GCCNNNNNGGC 1 cut(s) 937
BisI GCNGC 9 cut(s) 114, 117, 181, 491, 726, 851, 929, 1028, 1127
BlsI GCNGC 9 cut(s) 115, 118, 182, 492, 727, 852, 930, 1029, 1128
BmcAI AGTACT 1 cut(s) 1081
Bme1390I CCNGG 5 cut(s) 168, 495, 515, 858, 1149
Bme18I GGWCC 1 cut(s) 128
BmgT120I GGNCC 2 cut(s) 128, 1145
BmiI GGNNCC 4 cut(s) 130, 792, 909, 982
BmrFI CCNGG 5 cut(s) 168, 495, 515, 858, 1149
BmrI ACTGGG 1 cut(s) 688
BmsI GCATC 3 cut(s) 31, 427, 1228
BmuI ACTGGG 1 cut(s) 688
Bpu10I CCTNAGC 1 cut(s) 18
BpuMI CCSGG 3 cut(s) 168, 495, 515
BsaAI YACGTR 1 cut(s) 107
BsaHI GRCGYC 4 cut(s) 93, 171, 853, 940
BsaI GGTCTC 2 cut(s) 856, 1147
BsaJI CCNNGG 7 cut(s) 166, 335, 494, 514, 857, 1147, 1148
BsaXI ACNNNNNCTCC 4 cut(s) 168, 198, 267, 297
Bsc4I CCNNNNNNNGG 3 cut(s) 500, 601, 1283
Bse1I ACTGG 2 cut(s) 660, 683
Bse21I CCTNAGG 1 cut(s) 921
Bse3DI GCAATG 1 cut(s) 383
BseBI CCWGG 2 cut(s) 858, 1149
BseDI CCNNGG 7 cut(s) 166, 335, 494, 514, 857, 1147, 1148
BseGI GGATG 5 cut(s) 22, 220, 442, 640, 892
BseLI CCNNNNNNNGG 3 cut(s) 500, 601, 1283
BseMI GCAATG 1 cut(s) 383
BseMII CTCAG 5 cut(s) 32, 609, 815, 912, 1221
BseNI ACTGG 2 cut(s) 660, 683
BseRI GAGGAG 7 cut(s) 272, 291, 493, 496, 600, 803, 938
BseX3I CGGCCG 1 cut(s) 491
BseXI GCAGC 4 cut(s) 737, 940, 1039, 1138
Bsh1285I CGRYCG 1 cut(s) 494
BshFI GGCC 6 cut(s) 493, 513, 594, 625, 1146, 1297
BshNI GGYRCC 2 cut(s) 907, 980
BsiEI CGRYCG 1 cut(s) 494
BsiHKAI GWGCWC 2 cut(s) 919, 1105
BsiSI CCGG 3 cut(s) 168, 494, 514
BslFI GGGAC 1 cut(s) 624
BslI CCNNNNNNNGG 3 cut(s) 500, 601, 1283
BsmAI GTCTC 4 cut(s) 84, 461, 856, 1147
BsmBI CGTCTC 1 cut(s) 84
BsmFI GGGAC 1 cut(s) 624
BsnI GGCC 6 cut(s) 493, 513, 594, 625, 1146, 1297
Bso31I GGTCTC 2 cut(s) 856, 1147
Bsp1286I GDGCHC 2 cut(s) 919, 1105
Bsp143I GATC 2 cut(s) 808, 950
BspANI GGCC 6 cut(s) 493, 513, 594, 625, 1146, 1297
BspCNI CTCAG 5 cut(s) 31, 610, 814, 913, 1220
BspLI GGNNCC 4 cut(s) 130, 792, 909, 982
BspQI GCTCTTC 2 cut(s) 200, 1116
BspT107I GGYRCC 2 cut(s) 907, 980
BspTNI GGTCTC 2 cut(s) 856, 1147
BsrBI CCGCTC 1 cut(s) 547
BsrDI GCAATG 1 cut(s) 383
BsrI ACTGG 2 cut(s) 660, 683
BssECI CCNNGG 7 cut(s) 166, 335, 494, 514, 857, 1147, 1148
BssMI GATC 2 cut(s) 808, 950
BssNI GRCGYC 4 cut(s) 93, 171, 853, 940
Bst2UI CCWGG 2 cut(s) 858, 1149
Bst4CI ACNGT 1 cut(s) 1195
Bst6I CTCTTC 4 cut(s) 200, 502, 564, 1116
BstACI GRCGYC 4 cut(s) 93, 171, 853, 940
BstAPI GCANNNNNTGC 1 cut(s) 78
BstBAI YACGTR 1 cut(s) 107
BstDEI CTNAG 8 cut(s) 18, 618, 801, 921, 1207, 1227, 1257, 1307
BstDSI CCRYGG 1 cut(s) 335
BstF5I GGATG 5 cut(s) 22, 220, 442, 640, 892
BstKTI GATC 2 cut(s) 811, 953
BstMAI GTCTC 4 cut(s) 84, 461, 856, 1147
BstMBI GATC 2 cut(s) 808, 950
BstMCI CGRYCG 1 cut(s) 494
BstNI CCWGG 2 cut(s) 858, 1149
BstSCI CCNGG 5 cut(s) 166, 493, 513, 856, 1147
BstV1I GCAGC 4 cut(s) 737, 940, 1039, 1138
BstZI CGGCCG 1 cut(s) 491
Bsu36I CCTNAGG 1 cut(s) 921
BsuRI GGCC 6 cut(s) 493, 513, 594, 625, 1146, 1297
BtgI CCRYGG 1 cut(s) 335
BtsCI GGATG 5 cut(s) 22, 220, 442, 640, 892
CaiI CAGNNNCTG 1 cut(s) 1314
Cfr13I GGNCC 2 cut(s) 128, 1145
CseI GACGC 5 cut(s) 101, 160, 842, 929, 1028
Csp6I GTAC 7 cut(s) 104, 894, 908, 981, 995, 1080, 1094
CviAII CATG 4 cut(s) 142, 631, 806, 1064
CviQI GTAC 7 cut(s) 104, 894, 908, 981, 995, 1080, 1094
DdeI CTNAG 8 cut(s) 18, 618, 801, 921, 1207, 1227, 1257, 1307
DpnI GATC 2 cut(s) 810, 952
DpnII GATC 2 cut(s) 808, 950
DrdI GACNNNNNNGTC 1 cut(s) 1198
DseDI GACNNNNNNGTC 1 cut(s) 1198
EaeI YGGCCR 1 cut(s) 491
EagI CGGCCG 1 cut(s) 491
Eam1104I CTCTTC 4 cut(s) 200, 502, 564, 1116
EarI CTCTTC 4 cut(s) 200, 502, 564, 1116
EciI GGCGGA 2 cut(s) 134, 213
EclXI CGGCCG 1 cut(s) 491
Eco147I AGGCCT 1 cut(s) 1297
Eco31I GGTCTC 2 cut(s) 856, 1147
Eco47I GGWCC 1 cut(s) 128
Eco52I CGGCCG 1 cut(s) 491
Eco57I CTGAAG 1 cut(s) 14
Eco81I CCTNAGG 1 cut(s) 921
EcoO109I RGGNCCY 1 cut(s) 128
EcoRII CCWGG 2 cut(s) 856, 1147
Esp3I CGTCTC 1 cut(s) 84
FaeI CATG 4 cut(s) 145, 634, 809, 1067
FaqI GGGAC 1 cut(s) 624
FatI CATG 4 cut(s) 141, 630, 805, 1063
FauI CCCGC 1 cut(s) 492
FbaI TGATCA 1 cut(s) 808
FblI GTMKAC 1 cut(s) 207
Fnu4HI GCNGC 9 cut(s) 114, 117, 181, 491, 726, 851, 929, 1028, 1127
FokI GGATG 5 cut(s) 9, 207, 449, 647, 899
Fsp4HI GCNGC 9 cut(s) 114, 117, 181, 491, 726, 851, 929, 1028, 1127
FspBI CTAG 3 cut(s) 201, 1083, 1091
GluI GCNGC 9 cut(s) 114, 117, 181, 491, 726, 851, 929, 1028, 1127
HaeIII GGCC 6 cut(s) 493, 513, 594, 625, 1146, 1297
HapII CCGG 3 cut(s) 168, 494, 514
HgaI GACGC 5 cut(s) 101, 160, 842, 929, 1028
Hin1I GRCGYC 4 cut(s) 93, 171, 853, 940
Hin1II CATG 4 cut(s) 145, 634, 809, 1067
HinfI GANTC 4 cut(s) 349, 473, 718, 1175
HpaII CCGG 3 cut(s) 168, 494, 514
HphI GGTGA 2 cut(s) 616, 746
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 5 cut(s) 89, 619, 1180, 1210, 1310
Hpy188III TCNNGA 5 cut(s) 466, 899, 920, 1022, 1106
Hpy8I GTNNAC 1 cut(s) 208
Hpy99I CGWCG 4 cut(s) 176, 945, 1044, 1143
HpyAV CCTTC 5 cut(s) 38, 266, 480, 575, 584
HpyCH4III ACNGT 1 cut(s) 1195
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 3 cut(s) 43, 81, 296
HpyF3I CTNAG 8 cut(s) 18, 618, 801, 921, 1207, 1227, 1257, 1307
HpySE526I ACGT 1 cut(s) 106
Hsp92I GRCGYC 4 cut(s) 93, 171, 853, 940
Hsp92II CATG 4 cut(s) 145, 634, 809, 1067
KpnI GGTACC 2 cut(s) 911, 984
Ksp22I TGATCA 1 cut(s) 808
Kzo9I GATC 2 cut(s) 808, 950
LguI GCTCTTC 2 cut(s) 200, 1116
LmnI GCTCC 5 cut(s) 544, 790, 922, 925, 1024
Lsp1109I GCAGC 4 cut(s) 737, 940, 1039, 1138
LweI GCATC 3 cut(s) 31, 427, 1228
MaeI CTAG 3 cut(s) 201, 1083, 1091
MaeII ACGT 1 cut(s) 106
MalI GATC 2 cut(s) 810, 952
MbiI CCGCTC 1 cut(s) 547
MboI GATC 2 cut(s) 808, 950
MhlI GDGCHC 2 cut(s) 919, 1105
MluCI AATT 2 cut(s) 418, 424
MlyI GAGTC 2 cut(s) 358, 482
MmeI TCCRAC 1 cut(s) 211
MroXI GAANNNNTTC 1 cut(s) 717
MseI TTAA 3 cut(s) 162, 423, 552
MspA1I CMGCKG 1 cut(s) 728
MspI CCGG 3 cut(s) 168, 494, 514
MspR9I CCNGG 5 cut(s) 168, 495, 515, 858, 1149
MvaI CCWGG 2 cut(s) 858, 1149
NciI CCSGG 3 cut(s) 168, 495, 515
NdeII GATC 2 cut(s) 808, 950
NlaIII CATG 4 cut(s) 145, 634, 809, 1067
NlaIV GGNNCC 4 cut(s) 130, 792, 909, 982
PasI CCCWGGG 1 cut(s) 1148
PceI AGGCCT 1 cut(s) 1297
PciSI GCTCTTC 2 cut(s) 200, 1116
PdmI GAANNNNTTC 1 cut(s) 717
PfeI GAWTC 2 cut(s) 718, 1175
PflFI GACNNNGTC 1 cut(s) 472
PkrI GCNGC 9 cut(s) 115, 118, 182, 492, 727, 852, 930, 1029, 1128
PleI GAGTC 2 cut(s) 357, 481
PpsI GAGTC 2 cut(s) 357, 481
Ppu21I YACGTR 1 cut(s) 107
PpuMI RGGWCCY 1 cut(s) 128
PshBI ATTAAT 1 cut(s) 552
PsiI TTATAA 1 cut(s) 749
Psp5II RGGWCCY 1 cut(s) 128
Psp6I CCWGG 2 cut(s) 856, 1147
PspGI CCWGG 2 cut(s) 856, 1147
PspN4I GGNNCC 4 cut(s) 130, 792, 909, 982
PspPI GGNCC 2 cut(s) 128, 1145
PspPPI RGGWCCY 1 cut(s) 128
PstNI CAGNNNCTG 1 cut(s) 1314
PsyI GACNNNGTC 1 cut(s) 472
RsaI GTAC 7 cut(s) 105, 895, 909, 982, 996, 1081, 1095
RsaNI GTAC 7 cut(s) 104, 894, 908, 981, 995, 1080, 1094
SapI GCTCTTC 2 cut(s) 200, 1116
SaqAI TTAA 3 cut(s) 162, 423, 552
SatI GCNGC 9 cut(s) 114, 117, 181, 491, 726, 851, 929, 1028, 1127
Sau3AI GATC 2 cut(s) 808, 950
Sau96I GGNCC 2 cut(s) 128, 1145
ScaI AGTACT 1 cut(s) 1081
SchI GAGTC 2 cut(s) 358, 482
ScrFI CCNGG 5 cut(s) 168, 495, 515, 858, 1149
SduI GDGCHC 2 cut(s) 919, 1105
SfaNI GCATC 3 cut(s) 31, 427, 1228
SinI GGWCC 1 cut(s) 128
SpeI ACTAGT 1 cut(s) 1082
Sse9I AATT 2 cut(s) 418, 424
SseBI AGGCCT 1 cut(s) 1297
SspMI CTAG 3 cut(s) 201, 1083, 1091
StuI AGGCCT 1 cut(s) 1297
StyD4I CCNGG 5 cut(s) 166, 493, 513, 856, 1147
TaaI ACNGT 1 cut(s) 1195
TaiI ACGT 1 cut(s) 109
TasI AATT 2 cut(s) 418, 424
TatI WGTACW 1 cut(s) 1079
TauI GCSGC 5 cut(s) 116, 119, 183, 493, 853
TfiI GAWTC 2 cut(s) 718, 1175
Tru1I TTAA 3 cut(s) 162, 423, 552
Tru9I TTAA 3 cut(s) 162, 423, 552
TseI GCWGC 4 cut(s) 725, 928, 1027, 1126
TspDTI ATGAA 4 cut(s) 158, 353, 570, 756
Tth111I GACNNNGTC 1 cut(s) 472
VpaK11BI GGWCC 1 cut(s) 128
VspI ATTAAT 1 cut(s) 552
XmiI GTMKAC 1 cut(s) 207
XmnI GAANNNNTTC 1 cut(s) 717
XspI CTAG 3 cut(s) 201, 1083, 1091
ZrmI AGTACT 1 cut(s) 1081
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.