RLG00000006096

Domain in histone families 1 and 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0013660
Physical Location & Seq
Forward (+)
4340162 .. 4341945
1784 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006096

Sequence Viewer

Length: 1314 bp
ATGGCAATCCCAAAACCTCAGCATCCCCTTCAGCTTTGTCTGCAAAACTTGGAACAGCAAAGGCAAGAACGCATAATGTGCAGACTCCGAGACGCCGTTTTGGCACGTGTGGCAGCGTCGGCAGGACCTTCCAAACCCATCAACGCCGCCGACCACATTAACTCCGGCGTCGAACGCCGCCTCCAACAGCTCATCCCTAATGTCTACACTCCCACTCATCCGCCTTATGCCTCGATGATACAAAGGGCAATAGAGGAGTTGAATGAGGAAGGAGGAGGTGTAAGCGAGGTTGCAATATCGAAGTTTATCAAAAGGGAATACGAGGATTTGCCGTGGGCGCATGAGGGTCTGTTGAGGCTTCATTTGAAGAAGCAATGTGAGATTGGGGTGCTTGTGTTAGATGGTGGGAGGTATAATTTTAATTTGGTTCAGGACGGTGATGGTGGGGCTTCTGTTGATGTTGAGACAGAGTCGACGAGGAGAAGGCGGCCTGGGCGGGGTAGAAGAGGCCGGGGTAGATGGCGTGGCAGGGAAGAAGCGGAGCGGATTAATGAAGCATTTGAAGAAGAGGGGATTGAAGGAGGAGAAGGCCAAGATGAGGTGATGGGACAATCTGAGAGGCCTAACATGGATGAGGTAGAAAAGGCATTACTGGCACATATCAAATCGCATAACCGGGGAGAAGCAAACGAAGATGAGATGATAAAAGAACAGATTCGAGCAGGGGTGGGTGAAGATGAAGTTATAAAAAACAGTAACCAAAGAGAAGAACAGCAAAGTGGAGAGGAGCCACAATCTCAGTATGATCAGCAACAACAGAAATCACAAGAACAAGGCCAAGTAAAGAGGCGTCCAGGGAGACCTAAAGCTAATAAAGTTGGGGATGTAGGTACTCTGGAAGTGGTACCCTGTGCTCCTGAGGAGCAGCCTTTGAGGCGTCGAGGGAGATCAAAAGCTAAAAATGATATGGATTTAGGTACCAATGCCGAAGTACCCTGTGCTGTTGAACCTCCTAATGAGGAGCAGCCCCAGAGGCATCGAGGGAGGTCTAAAGCTAAACATGATATGGAGGCAAGTACTAGCAGTCTAGTACCTTGTGCTCTTGAACATCGACACGAAGAGCAGCCACCGAAGCGACGAGGCCCAGGGAGACCTCCTAAACCAAAGCCAGATTCAGAAGCTACCTTGACAGTTTTGTCAAGCTCAGAAATTCCGCATCACTCTAAGCAGCAGCAGCCCCTGAGCCAAGCAACTAAGATGAGGTTTTCTAAACCAAAGCGAGGCAGTGGGAGGCCTCGAACCCTCAGAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone

Protein Analysis

438

Amino Acids

49.13

Weight (kDa)

8.43

Isoelectric Point (pI)

71.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Linker_histone PF00538 73 - 133 1.3e-09 linker histone H1 and H5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 746
AasI GACNNNNNNGTC 1 cut(s) 1195
Acc65I GGTACC 2 cut(s) 904, 977
AccB1I GGYRCC 2 cut(s) 904, 977
AccBSI CCGCTC 1 cut(s) 544
AccI GTMKAC 2 cut(s) 204, 473
AciI CCGC 8 cut(s) 147, 178, 221, 487, 496, 539, 544, 1214
AcsI RAATTY 1 cut(s) 1209
AcuI CTGAAG 1 cut(s) 14
AcvI CACGTG 1 cut(s) 107
AcyI GRCGYC 4 cut(s) 93, 168, 850, 937
AfaI GTAC 6 cut(s) 892, 906, 979, 993, 1078, 1092
AfiI CCNNNNNNNGG 3 cut(s) 497, 598, 1280
AflIII ACRYGT 1 cut(s) 106
AgsI TTSAA 6 cut(s) 262, 367, 563, 578, 1007, 1106
AjnI CCWGG 3 cut(s) 490, 853, 1144
AjuI GAANNNNNNNTTGG 2 cut(s) 1156, 1188
AloI GAACNNNNNNTCC 2 cut(s) 165, 197
AluBI AGCT 7 cut(s) 34, 190, 869, 956, 1055, 1181, 1203
AluI AGCT 7 cut(s) 34, 190, 869, 956, 1055, 1181, 1203
Alw21I GWGCWC 2 cut(s) 916, 1102
Alw26I GTCTC 4 cut(s) 84, 458, 853, 1144
AlwNI CAGNNNCTG 2 cut(s) 1240, 1311
AoxI GGCC 7 cut(s) 488, 508, 589, 620, 835, 1141, 1292
ApeKI GCWGC 7 cut(s) 113, 925, 1024, 1123, 1228, 1231, 1234
ApoI RAATTY 1 cut(s) 1209
AseI ATTAAT 1 cut(s) 549
Asp700I GAANNNNTTC 1 cut(s) 714
Asp718I GGTACC 2 cut(s) 904, 977
AspLEI GCGC 1 cut(s) 340
AspS9I GGNCC 2 cut(s) 125, 1142
AsuC2I CCSGG 2 cut(s) 512, 677
AsuHPI GGTGA 3 cut(s) 449, 613, 743
AvaII GGWCC 1 cut(s) 125
AxyI CCTNAGG 1 cut(s) 918
BanI GGYRCC 2 cut(s) 904, 977
BbrPI CACGTG 1 cut(s) 107
Bbv12I GWGCWC 2 cut(s) 916, 1102
BbvCI CCTCAGC 1 cut(s) 18
BbvI GCAGC 7 cut(s) 125, 937, 1036, 1135, 1240, 1243, 1246
BccI CCATC 5 cut(s) 146, 395, 434, 513, 598
BceAI ACGGC 2 cut(s) 80, 316
BciT130I CCWGG 3 cut(s) 492, 855, 1146
BclI TGATCA 1 cut(s) 805
BcnI CCSGG 2 cut(s) 512, 677
BcoDI GTCTC 4 cut(s) 84, 458, 853, 1144
BfaI CTAG 2 cut(s) 1080, 1088
BglI GCCNNNNNGGC 3 cut(s) 101, 934, 1033
BmcAI AGTACT 1 cut(s) 1078
Bme1390I CCNGG 5 cut(s) 492, 512, 677, 855, 1146
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 2 cut(s) 125, 1142
BmiI GGNNCC 3 cut(s) 789, 906, 979
BmrFI CCNGG 5 cut(s) 492, 512, 677, 855, 1146
BmsI GCATC 3 cut(s) 31, 1045, 1225
Bpu10I CCTNAGC 2 cut(s) 18, 1241
BpuMI CCSGG 2 cut(s) 512, 677
BsaAI YACGTR 1 cut(s) 107
BsaHI GRCGYC 4 cut(s) 93, 168, 850, 937
BsaI GGTCTC 2 cut(s) 853, 1144
BsaJI CCNNGG 7 cut(s) 332, 491, 511, 676, 854, 1144, 1145
BsaXI ACNNNNNCTCC 6 cut(s) 146, 165, 176, 195, 264, 294
Bsc4I CCNNNNNNNGG 3 cut(s) 497, 598, 1280
Bse1I ACTGG 1 cut(s) 657
Bse21I CCTNAGG 1 cut(s) 918
Bse3DI GCAATG 1 cut(s) 380
BseBI CCWGG 3 cut(s) 492, 855, 1146
BseDI CCNNGG 7 cut(s) 332, 491, 511, 676, 854, 1144, 1145
BseGI GGATG 5 cut(s) 22, 192, 217, 637, 889
BseLI CCNNNNNNNGG 3 cut(s) 497, 598, 1280
BseMI GCAATG 1 cut(s) 380
BseMII CTCAG 6 cut(s) 32, 606, 812, 909, 1218, 1232
BseNI ACTGG 1 cut(s) 657
BseRI GAGGAG 7 cut(s) 269, 288, 493, 597, 800, 935, 1034
BseXI GCAGC 7 cut(s) 125, 937, 1036, 1135, 1240, 1243, 1246
BsgI GTGCAG 1 cut(s) 100
BshFI GGCC 7 cut(s) 490, 510, 591, 622, 837, 1143, 1294
BshNI GGYRCC 2 cut(s) 904, 977
BsiHKAI GWGCWC 2 cut(s) 916, 1102
BsiSI CCGG 3 cut(s) 165, 511, 676
BslFI GGGAC 1 cut(s) 621
BslI CCNNNNNNNGG 3 cut(s) 497, 598, 1280
BsmAI GTCTC 4 cut(s) 84, 458, 853, 1144
BsmBI CGTCTC 1 cut(s) 84
BsmFI GGGAC 1 cut(s) 621
BsnI GGCC 7 cut(s) 490, 510, 591, 622, 837, 1143, 1294
Bso31I GGTCTC 2 cut(s) 853, 1144
Bsp1286I GDGCHC 2 cut(s) 916, 1102
Bsp143I GATC 2 cut(s) 805, 947
BspACI CCGC 8 cut(s) 147, 178, 221, 487, 496, 539, 544, 1214
BspANI GGCC 7 cut(s) 490, 510, 591, 622, 837, 1143, 1294
BspCNI CTCAG 6 cut(s) 31, 607, 811, 910, 1217, 1233
BspLI GGNNCC 3 cut(s) 789, 906, 979
BspQI GCTCTTC 1 cut(s) 1113
BspT107I GGYRCC 2 cut(s) 904, 977
BspTNI GGTCTC 2 cut(s) 853, 1144
BsrBI CCGCTC 1 cut(s) 544
BsrDI GCAATG 1 cut(s) 380
BsrI ACTGG 1 cut(s) 657
BssECI CCNNGG 7 cut(s) 332, 491, 511, 676, 854, 1144, 1145
BssMI GATC 2 cut(s) 805, 947
BssNI GRCGYC 4 cut(s) 93, 168, 850, 937
Bst2UI CCWGG 3 cut(s) 492, 855, 1146
Bst4CI ACNGT 3 cut(s) 437, 755, 1192
Bst6I CTCTTC 3 cut(s) 499, 561, 1113
BstACI GRCGYC 4 cut(s) 93, 168, 850, 937
BstAPI GCANNNNNTGC 1 cut(s) 78
BstBAI YACGTR 1 cut(s) 107
BstDEI CTNAG 9 cut(s) 18, 615, 798, 918, 1204, 1224, 1241, 1254, 1304
BstDSI CCRYGG 1 cut(s) 332
BstF5I GGATG 5 cut(s) 22, 192, 217, 637, 889
BstHHI GCGC 1 cut(s) 340
BstKTI GATC 2 cut(s) 808, 950
BstMAI GTCTC 4 cut(s) 84, 458, 853, 1144
BstMBI GATC 2 cut(s) 805, 947
BstNI CCWGG 3 cut(s) 492, 855, 1146
BstSCI CCNGG 5 cut(s) 490, 510, 675, 853, 1144
BstV1I GCAGC 7 cut(s) 125, 937, 1036, 1135, 1240, 1243, 1246
Bsu36I CCTNAGG 1 cut(s) 918
BsuRI GGCC 7 cut(s) 490, 510, 591, 622, 837, 1143, 1294
BtgI CCRYGG 1 cut(s) 332
BtsCI GGATG 5 cut(s) 22, 192, 217, 637, 889
BtsI GCAGTG 1 cut(s) 1291
BtsIMutI CAGTG 1 cut(s) 1291
CaiI CAGNNNCTG 2 cut(s) 1240, 1311
CfoI GCGC 1 cut(s) 340
Cfr13I GGNCC 2 cut(s) 125, 1142
CseI GACGC 5 cut(s) 101, 105, 157, 839, 926
Csp6I GTAC 6 cut(s) 891, 905, 978, 992, 1077, 1091
CviAII CATG 3 cut(s) 341, 628, 1061
CviQI GTAC 6 cut(s) 891, 905, 978, 992, 1077, 1091
DdeI CTNAG 9 cut(s) 18, 615, 798, 918, 1204, 1224, 1241, 1254, 1304
DpnI GATC 2 cut(s) 807, 949
DpnII GATC 2 cut(s) 805, 947
DrdI GACNNNNNNGTC 1 cut(s) 1195
DseDI GACNNNNNNGTC 1 cut(s) 1195
Eam1104I CTCTTC 3 cut(s) 499, 561, 1113
EarI CTCTTC 3 cut(s) 499, 561, 1113
EciI GGCGGA 1 cut(s) 210
Eco147I AGGCCT 2 cut(s) 622, 1294
Eco31I GGTCTC 2 cut(s) 853, 1144
Eco47I GGWCC 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 14
Eco72I CACGTG 1 cut(s) 107
Eco81I CCTNAGG 1 cut(s) 918
EcoO109I RGGNCCY 1 cut(s) 125
EcoRII CCWGG 3 cut(s) 490, 853, 1144
Esp3I CGTCTC 1 cut(s) 84
FaeI CATG 3 cut(s) 344, 631, 1064
FaqI GGGAC 1 cut(s) 621
FatI CATG 3 cut(s) 340, 627, 1060
FauI CCCGC 1 cut(s) 489
FbaI TGATCA 1 cut(s) 805
FblI GTMKAC 2 cut(s) 204, 473
FokI GGATG 5 cut(s) 9, 179, 204, 644, 896
FspBI CTAG 2 cut(s) 1080, 1088
GlaI GCGC 1 cut(s) 339
HaeIII GGCC 7 cut(s) 490, 510, 591, 622, 837, 1143, 1294
HapII CCGG 3 cut(s) 165, 511, 676
HgaI GACGC 5 cut(s) 101, 105, 157, 839, 926
HhaI GCGC 1 cut(s) 340
Hin1I GRCGYC 4 cut(s) 93, 168, 850, 937
Hin1II CATG 3 cut(s) 344, 631, 1064
Hin6I GCGC 1 cut(s) 338
HinP1I GCGC 1 cut(s) 338
HincII GTYRAC 1 cut(s) 474
HindII GTYRAC 1 cut(s) 474
HinfI GANTC 4 cut(s) 84, 470, 715, 1172
HpaII CCGG 3 cut(s) 165, 511, 676
HphI GGTGA 3 cut(s) 449, 613, 743
Hpy166II GTNNAC 2 cut(s) 205, 474
Hpy188I TCNGA 5 cut(s) 89, 616, 1177, 1207, 1307
Hpy188III TCNNGA 4 cut(s) 431, 896, 917, 1103
Hpy8I GTNNAC 2 cut(s) 205, 474
Hpy99I CGWCG 5 cut(s) 121, 173, 478, 942, 1140
HpyAV CCTTC 6 cut(s) 38, 138, 263, 477, 572, 581
HpyCH4III ACNGT 3 cut(s) 437, 755, 1192
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 3 cut(s) 43, 81, 293
HpyF3I CTNAG 9 cut(s) 18, 615, 798, 918, 1204, 1224, 1241, 1254, 1304
HpySE526I ACGT 1 cut(s) 106
Hsp92I GRCGYC 4 cut(s) 93, 168, 850, 937
Hsp92II CATG 3 cut(s) 344, 631, 1064
HspAI GCGC 1 cut(s) 338
KpnI GGTACC 2 cut(s) 908, 981
Ksp22I TGATCA 1 cut(s) 805
Kzo9I GATC 2 cut(s) 805, 947
LguI GCTCTTC 1 cut(s) 1113
LmnI GCTCC 5 cut(s) 541, 787, 919, 922, 1021
Lsp1109I GCAGC 7 cut(s) 125, 937, 1036, 1135, 1240, 1243, 1246
LweI GCATC 3 cut(s) 31, 1045, 1225
MaeI CTAG 2 cut(s) 1080, 1088
MaeII ACGT 1 cut(s) 106
MaeIII GTNAC 1 cut(s) 755
MalI GATC 2 cut(s) 807, 949
MbiI CCGCTC 1 cut(s) 544
MboI GATC 2 cut(s) 805, 947
MboII GAAGA 9 cut(s) 379, 516, 545, 575, 578, 704, 746, 779, 1130
MhlI GDGCHC 2 cut(s) 916, 1102
MluCI AATT 3 cut(s) 415, 421, 1209
MlyI GAGTC 2 cut(s) 78, 479
MmeI TCCRAC 1 cut(s) 208
MroXI GAANNNNTTC 1 cut(s) 714
MseI TTAA 3 cut(s) 159, 420, 549
MspI CCGG 3 cut(s) 165, 511, 676
MspR9I CCNGG 5 cut(s) 492, 512, 677, 855, 1146
MvaI CCWGG 3 cut(s) 492, 855, 1146
NciI CCSGG 2 cut(s) 512, 677
NdeII GATC 2 cut(s) 805, 947
NlaIII CATG 3 cut(s) 344, 631, 1064
NlaIV GGNNCC 3 cut(s) 789, 906, 979
PasI CCCWGGG 1 cut(s) 1145
PceI AGGCCT 2 cut(s) 622, 1294
PciSI GCTCTTC 1 cut(s) 1113
PdmI GAANNNNTTC 1 cut(s) 714
PfeI GAWTC 2 cut(s) 715, 1172
PflFI GACNNNGTC 1 cut(s) 469
PleI GAGTC 2 cut(s) 78, 478
PmaCI CACGTG 1 cut(s) 107
PmlI CACGTG 1 cut(s) 107
PpsI GAGTC 2 cut(s) 78, 478
Ppu21I YACGTR 1 cut(s) 107
PpuMI RGGWCCY 1 cut(s) 125
PshBI ATTAAT 1 cut(s) 549
PsiI TTATAA 1 cut(s) 746
Psp5II RGGWCCY 1 cut(s) 125
Psp6I CCWGG 3 cut(s) 490, 853, 1144
PspCI CACGTG 1 cut(s) 107
PspGI CCWGG 3 cut(s) 490, 853, 1144
PspN4I GGNNCC 3 cut(s) 789, 906, 979
PspPI GGNCC 2 cut(s) 125, 1142
PspPPI RGGWCCY 1 cut(s) 125
PstNI CAGNNNCTG 2 cut(s) 1240, 1311
PsyI GACNNNGTC 1 cut(s) 469
RsaI GTAC 6 cut(s) 892, 906, 979, 993, 1078, 1092
RsaNI GTAC 6 cut(s) 891, 905, 978, 992, 1077, 1091
SalI GTCGAC 1 cut(s) 472
SapI GCTCTTC 1 cut(s) 1113
SaqAI TTAA 3 cut(s) 159, 420, 549
Sau3AI GATC 2 cut(s) 805, 947
Sau96I GGNCC 2 cut(s) 125, 1142
ScaI AGTACT 1 cut(s) 1078
SchI GAGTC 2 cut(s) 78, 479
ScrFI CCNGG 5 cut(s) 492, 512, 677, 855, 1146
SduI GDGCHC 2 cut(s) 916, 1102
SfaNI GCATC 3 cut(s) 31, 1045, 1225
SinI GGWCC 1 cut(s) 125
Sse9I AATT 3 cut(s) 415, 421, 1209
SseBI AGGCCT 2 cut(s) 622, 1294
SsiI CCGC 8 cut(s) 147, 178, 221, 487, 496, 539, 544, 1214
SspMI CTAG 2 cut(s) 1080, 1088
StuI AGGCCT 2 cut(s) 622, 1294
StyD4I CCNGG 5 cut(s) 490, 510, 675, 853, 1144
TaaI ACNGT 3 cut(s) 437, 755, 1192
TaiI ACGT 1 cut(s) 109
TaqI TCGA 9 cut(s) 171, 233, 299, 473, 718, 940, 1039, 1111, 1297
TasI AATT 3 cut(s) 415, 421, 1209
TatI WGTACW 1 cut(s) 1076
TauI GCSGC 3 cut(s) 149, 180, 490
TfiI GAWTC 2 cut(s) 715, 1172
Tru1I TTAA 3 cut(s) 159, 420, 549
Tru9I TTAA 3 cut(s) 159, 420, 549
TscAI CASTG 1 cut(s) 1291
TseI GCWGC 7 cut(s) 113, 925, 1024, 1123, 1228, 1231, 1234
TspDTI ATGAA 3 cut(s) 350, 567, 753
TspRI CASTG 1 cut(s) 1291
Tth111I GACNNNGTC 1 cut(s) 469
VpaK11BI GGWCC 1 cut(s) 125
VspI ATTAAT 1 cut(s) 549
XapI RAATTY 1 cut(s) 1209
XmiI GTMKAC 2 cut(s) 204, 473
XmnI GAANNNNTTC 1 cut(s) 714
XspI CTAG 2 cut(s) 1080, 1088
ZrmI AGTACT 1 cut(s) 1078
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.