Rorug04G0332900

Domain in histone families 1 and 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0013660
Physical Location & Seq
Reverse (-)
50708007 .. 50710433
2427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0332900.1

Sequence Viewer

Length: 618 bp
ATGTCGACAGCTTTCTCGTTGTTCTCCGACGAAGCCGTTTTGACGGTGCTTAGCGACGCGGCGTCGTTTGGAACTTCTTATAGCAAGAATGATATGCTTGCCTGGACGACTATATCTAGAATTGTAGAAATTGTTCTTCTTGCATATCCATTAGTTTTCACATTTGCGTTTGCACTTGCTACAGAAAAACTAAACTTTCAGTGGAGGATATGTCTGATGGTGAAGGATTTGACTAGAGGATTATCCATCATCAATCAGAGAGACGACTCAGAAGATGAAGACAGTGGTTCCTCTGAAAATGAGCTCAACACCAGTAGAAATGATGGTTTGGCCATTCATCTGGTAATGAGGAGGAAAGTGACTGTTCTGGACCTTGTGAAGAAGTCGAGGAAAGTGATTCATCTGAAGATGTGGGAAGAAAAGAAGGAAAAAGAAGACAAATTGCAATCCTTTCTTGCTAGCGCTGATGATTCCAAAAATTGGCACAATTTTTTTGATGAATACAATGATGAGGAAGTAGAACTGACAAAAGTGGAGGGTCGTGCAATAGAGGAGGCTGTTGGAAATGAACAGAAGAGGTGTCTCCGGCATCAGAGGAGTCCGAGCCTGTCAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone

Protein Analysis

205

Amino Acids

23.45

Weight (kDa)

5.23

Isoelectric Point (pI)

47.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 480
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 59
AciI CCGC 1 cut(s) 59
AcoI YGGCCR 1 cut(s) 330
AcuI CTGAAG 1 cut(s) 425
AcyI GRCGYC 1 cut(s) 62
AfeI AGCGCT 1 cut(s) 463
AfiI CCNNNNNNNGG 1 cut(s) 480
AhdI GACNNNNNGTC 1 cut(s) 61
AjnI CCWGG 1 cut(s) 101
AluBI AGCT 2 cut(s) 11, 304
AluI AGCT 2 cut(s) 11, 304
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 2 cut(s) 255, 587
Aor51HI AGCGCT 1 cut(s) 463
AoxI GGCC 1 cut(s) 330
Asp700I GAANNNNTTC 1 cut(s) 132
AspLEI GCGC 1 cut(s) 464
AspS9I GGNCC 1 cut(s) 370
AsuHPI GGTGA 1 cut(s) 232
AsuNHI GCTAGC 1 cut(s) 458
AvaII GGWCC 1 cut(s) 370
BalI TGGCCA 1 cut(s) 332
BanII GRGCYC 1 cut(s) 306
BbsI GAAGAC 2 cut(s) 285, 441
Bbv12I GWGCWC 1 cut(s) 306
BccI CCATC 3 cut(s) 211, 254, 317
BceAI ACGGC 1 cut(s) 20
BciT130I CCWGG 1 cut(s) 103
BcoDI GTCTC 2 cut(s) 255, 587
BfaI CTAG 3 cut(s) 117, 234, 459
BfmI CTRYAG 1 cut(s) 180
BfoI RGCGCY 1 cut(s) 465
BisI GCNGC 1 cut(s) 60
BlpI GCTNAGC 1 cut(s) 50
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 1 cut(s) 103
Bme18I GGWCC 1 cut(s) 370
BmeRI GACNNNNNGTC 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 370
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 1 cut(s) 103
BmsI GCATC 1 cut(s) 598
BmtI GCTAGC 1 cut(s) 462
BpiI GAAGAC 2 cut(s) 285, 441
Bpu1102I GCTNAGC 1 cut(s) 50
BsaHI GRCGYC 1 cut(s) 62
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
Bsc4I CCNNNNNNNGG 1 cut(s) 480
Bse1I ACTGG 1 cut(s) 312
BseBI CCWGG 1 cut(s) 103
BseLI CCNNNNNNNGG 1 cut(s) 480
BseMII CTCAG 1 cut(s) 282
BseNI ACTGG 1 cut(s) 312
BseRI GAGGAG 3 cut(s) 364, 566, 610
Bsh1236I CGCG 1 cut(s) 59
BshFI GGCC 1 cut(s) 332
BsiHKAI GWGCWC 1 cut(s) 306
BsiSI CCGG 1 cut(s) 586
BslI CCNNNNNNNGG 1 cut(s) 480
BsmAI GTCTC 2 cut(s) 255, 587
BsmBI CGTCTC 1 cut(s) 255
BsnI GGCC 1 cut(s) 332
Bsp1286I GDGCHC 1 cut(s) 306
Bsp1720I GCTNAGC 1 cut(s) 50
BspACI CCGC 1 cut(s) 59
BspANI GGCC 1 cut(s) 332
BspCNI CTCAG 1 cut(s) 281
BspFNI CGCG 1 cut(s) 59
BspLI GGNNCC 1 cut(s) 289
BspOI GCTAGC 1 cut(s) 462
BsrI ACTGG 1 cut(s) 312
BssNI GRCGYC 1 cut(s) 62
Bst2UI CCWGG 1 cut(s) 103
Bst4CI ACNGT 3 cut(s) 46, 284, 364
Bst6I CTCTTC 1 cut(s) 569
BstACI GRCGYC 1 cut(s) 62
BstC8I GCNNGC 2 cut(s) 99, 460
BstDEI CTNAG 2 cut(s) 50, 268
BstFNI CGCG 1 cut(s) 59
BstH2I RGCGCY 1 cut(s) 465
BstHHI GCGC 1 cut(s) 464
BstMAI GTCTC 2 cut(s) 255, 587
BstNI CCWGG 1 cut(s) 103
BstSCI CCNGG 1 cut(s) 101
BstSFI CTRYAG 1 cut(s) 180
BstUI CGCG 1 cut(s) 59
BstV2I GAAGAC 2 cut(s) 285, 441
BstXI CCANNNNNNTGG 1 cut(s) 340
BsuRI GGCC 1 cut(s) 332
BtsIMutI CAGTG 2 cut(s) 206, 289
Cac8I GCNNGC 2 cut(s) 99, 460
CfoI GCGC 1 cut(s) 464
Cfr13I GGNCC 1 cut(s) 370
CseI GACGC 2 cut(s) 51, 65
CviJI RGCY 7 cut(s) 11, 35, 304, 332, 557, 606, 614
CviKI_1 RGCY 7 cut(s) 11, 35, 304, 332, 557, 606, 614
DdeI CTNAG 2 cut(s) 50, 268
DriI GACNNNNNGTC 1 cut(s) 61
EaeI YGGCCR 1 cut(s) 330
Eam1104I CTCTTC 1 cut(s) 569
Eam1105I GACNNNNNGTC 1 cut(s) 61
EarI CTCTTC 1 cut(s) 569
Ecl136II GAGCTC 1 cut(s) 304
Eco24I GRGCYC 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 370
Eco47III AGCGCT 1 cut(s) 463
Eco53kI GAGCTC 1 cut(s) 304
Eco57I CTGAAG 1 cut(s) 425
EcoICRI GAGCTC 1 cut(s) 304
EcoRII CCWGG 1 cut(s) 101
EcoT38I GRGCYC 1 cut(s) 306
Esp3I CGTCTC 1 cut(s) 255
FaiI YATR 5 cut(s) 81, 95, 113, 145, 211
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 60
FriOI GRGCYC 1 cut(s) 306
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 3 cut(s) 117, 234, 459
GlaI GCGC 1 cut(s) 463
GluI GCNGC 1 cut(s) 60
HaeII RGCGCY 1 cut(s) 465
HaeIII GGCC 1 cut(s) 332
HapII CCGG 1 cut(s) 586
HgaI GACGC 2 cut(s) 51, 65
HhaI GCGC 1 cut(s) 464
Hin1I GRCGYC 1 cut(s) 62
Hin6I GCGC 1 cut(s) 462
HinP1I GCGC 1 cut(s) 462
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 4 cut(s) 266, 397, 470, 598
HpaII CCGG 1 cut(s) 586
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 8 cut(s) 28, 216, 258, 271, 295, 405, 594, 603
Hpy188III TCNNGA 2 cut(s) 117, 368
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 3 cut(s) 32, 59, 67
HpyAV CCTTC 2 cut(s) 217, 418
HpyCH4III ACNGT 3 cut(s) 46, 284, 364
HpyCH4V TGCA 4 cut(s) 143, 173, 445, 545
HpyF3I CTNAG 2 cut(s) 50, 268
Hsp92I GRCGYC 1 cut(s) 62
HspAI GCGC 1 cut(s) 462
LpnPI CCDG 6 cut(s) 88, 115, 325, 326, 353, 599
LweI GCATC 1 cut(s) 598
MaeI CTAG 3 cut(s) 117, 234, 459
MaeIII GTNAC 1 cut(s) 358
MboII GAAGA 8 cut(s) 128, 284, 290, 391, 418, 428, 446, 586
MhlI GDGCHC 1 cut(s) 306
MlsI TGGCCA 1 cut(s) 332
MluCI AATT 5 cut(s) 120, 129, 440, 478, 487
MluNI TGGCCA 1 cut(s) 332
MlyI GAGTC 2 cut(s) 260, 607
MmeI TCCRAC 2 cut(s) 51, 541
Mox20I TGGCCA 1 cut(s) 332
MroXI GAANNNNTTC 1 cut(s) 132
MscI TGGCCA 1 cut(s) 332
Msp20I TGGCCA 1 cut(s) 332
MspI CCGG 1 cut(s) 586
MspR9I CCNGG 1 cut(s) 103
MvaI CCWGG 1 cut(s) 103
MvnI CGCG 1 cut(s) 59
NheI GCTAGC 1 cut(s) 458
NlaIV GGNNCC 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 358
PdmI GAANNNNTTC 1 cut(s) 132
PfeI GAWTC 2 cut(s) 397, 470
PflMI CCANNNNNTGG 1 cut(s) 480
PkrI GCNGC 1 cut(s) 61
PleI GAGTC 2 cut(s) 260, 606
PpsI GAGTC 2 cut(s) 260, 606
Psp124BI GAGCTC 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 101
PspGI CCWGG 1 cut(s) 101
PspN4I GGNNCC 1 cut(s) 289
PspPI GGNCC 1 cut(s) 370
PsrI GAACNNNNNNTAC 2 cut(s) 117, 149
SacI GAGCTC 1 cut(s) 306
SalI GTCGAC 1 cut(s) 4
SatI GCNGC 1 cut(s) 60
Sau96I GGNCC 1 cut(s) 370
SchI GAGTC 2 cut(s) 260, 607
ScrFI CCNGG 1 cut(s) 103
SduI GDGCHC 1 cut(s) 306
SetI ASST 4 cut(s) 13, 306, 375, 581
SfaNI GCATC 1 cut(s) 598
SfcI CTRYAG 1 cut(s) 180
SinI GGWCC 1 cut(s) 370
Sse9I AATT 5 cut(s) 120, 129, 440, 478, 487
SsiI CCGC 1 cut(s) 59
SspMI CTAG 3 cut(s) 117, 234, 459
SstI GAGCTC 1 cut(s) 306
StyD4I CCNGG 1 cut(s) 101
TaaI ACNGT 3 cut(s) 46, 284, 364
TaqI TCGA 2 cut(s) 5, 386
TasI AATT 5 cut(s) 120, 129, 440, 478, 487
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 2 cut(s) 397, 470
TscAI CASTG 2 cut(s) 206, 289
TseFI GTSAC 1 cut(s) 358
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 5 cut(s) 291, 326, 389, 513, 582
TspRI CASTG 2 cut(s) 206, 289
Van91I CCANNNNNTGG 1 cut(s) 480
VpaK11BI GGWCC 1 cut(s) 370
XbaI TCTAGA 1 cut(s) 116
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 132
XspI CTAG 3 cut(s) 117, 234, 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.