RchiOBHm_Chr4g0441381

Domain in histone families 1 and 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0013660
Physical Location & Seq
Reverse (-)
63221688 .. 63223931
2244 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40923

Sequence Viewer

Length: 1317 bp
ATGGCAATCCCAAAACCTCAGCATCCCCTTCAGCTTTGTCTGCAAAACTTTGAACGGCAAAAGCAAGAACGCATAATGTGCAAACTCCGAGACGCCGTTTTGGCACGTGTGGCGGCGGCGGAGGCAGGAACCTCCAAACCCATGAACACCGCCGACCACATTAACTCCGGCGTCGAGCGCCGCCTCCAACAGCTCATCCCTAGTGTCTACACTCCCACTCATCCGCCTTATGCCTCGATGATACAAAGGGCAATAGAGGAGTTGAAGGAGGAAGGAGGAGGTGTGAGCGAGGTTGCAATATCGAAGTTTATCAAAAGGGAATACGAGGATTTGCCGTGGGCGCATGAGGGTCTGTTGAGGCTTCATTTGAAGAAGCAATTTGAGATTGGGGTGCTTGTGTTAGATGGTGGGAGGTATAATTTTAATTTGGTTGAGGATGGTGATGGTGGGGCTTCTGTTGATGTTGGGACAGAGTCGAGGAGGAGAAGGCGGCCGGGGCGGGGTAGAAGAGGCCGGGGTAGATGGCGTGGCAGGGAAGAAGCGGAGCGGATTAATGAAGCATTTGAAGAAGAGGGGATTGAAGGAGGAGAAGGCCAAGATGAGGTGATGGGACAATCTGAGAGGCCAAACATGGATGAGGTGGAAAAGGCGTTACTGGCATATATCAAATCGCATAACCGGGGAGAAGCAAACGAAGATGAGATGATAAAAGAACAGATTCGAGCAGGGGTGGGTGAAGATGAAGTTATAAAAAACAATAACCAAAGAGAAGAACAGCAAAGTGGAGAGGAGCCACAATCTCAGCATGATCAGCAACAACAGAAATCACAAGAACAAGGCCAAGTAAAGCGGCGTCCAGGGAGACCTAAAGCTAATAAAGTTGGGGATGTAAGTACTCTGGAAGTGGTACCCTGTGCTCCTGAGGAGCAGCCTTTGAGGCGTCGATGGAGATCAAAAGCTAAAAATGATATGGATTTAGGTACCAATGCCGAAGTACCCTGTGCTGTTGAACCTCCTAATGAGGAGCAGCCCCAGAGGCGCCGAGGGAGGTCTAAAGCTAAACATGATATGGAGGCAAGTACTAGTAGTCTATTACCTTGTGCCCTTGAACATCGACAGGAAGAGCAGCCACCGAAGCGACGAGGCCCAGGGAGACCTCCTAAACCAAAGCCAGATTCAGAAGTTACCTTGACAGTTTTGTCAAGCTCAGATATTCCGCATCACTCTAAGCAACAACAGCCCCTGAGCCAAGCAACTAAGATGAGGTTTTGTAAACCAAAGCGAGGCAGAGGGAGGCCTCGAACCCTCAGAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone

Protein Analysis

438

Amino Acids

49.62

Weight (kDa)

9.0

Isoelectric Point (pI)

72.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Linker_histone PF00538 74 - 134 1.1e-09 linker histone H1 and H5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 749
AasI GACNNNNNNGTC 1 cut(s) 1198
Acc65I GGTACC 2 cut(s) 907, 980
AccB1I GGYRCC 3 cut(s) 907, 980, 1038
AccBSI CCGCTC 1 cut(s) 547
AccI GTMKAC 1 cut(s) 207
AcoI YGGCCR 1 cut(s) 491
AcuI CTGAAG 1 cut(s) 14
AcvI CACGTG 1 cut(s) 107
AcyI GRCGYC 5 cut(s) 93, 171, 853, 940, 1039
AfaI GTAC 5 cut(s) 895, 909, 982, 996, 1081
AfiI CCNNNNNNNGG 3 cut(s) 500, 601, 1283
AflIII ACRYGT 1 cut(s) 106
AgsI TTSAA 7 cut(s) 53, 265, 370, 566, 581, 1010, 1109
AhlI ACTAGT 1 cut(s) 1082
AjnI CCWGG 2 cut(s) 856, 1147
AjuI GAANNNNNNNTTGG 2 cut(s) 1159, 1191
AluBI AGCT 6 cut(s) 34, 193, 872, 959, 1058, 1206
AluI AGCT 6 cut(s) 34, 193, 872, 959, 1058, 1206
Alw21I GWGCWC 1 cut(s) 919
Alw26I GTCTC 3 cut(s) 84, 856, 1147
AlwNI CAGNNNCTG 2 cut(s) 1243, 1314
AoxI GGCC 7 cut(s) 491, 511, 592, 623, 838, 1144, 1295
ApeKI GCWGC 3 cut(s) 928, 1027, 1126
AseI ATTAAT 1 cut(s) 552
Asp700I GAANNNNTTC 1 cut(s) 717
Asp718I GGTACC 2 cut(s) 907, 980
AspLEI GCGC 3 cut(s) 180, 343, 1041
AspS9I GGNCC 1 cut(s) 1145
AsuC2I CCSGG 3 cut(s) 495, 515, 680
AsuHPI GGTGA 3 cut(s) 452, 616, 746
AxyI CCTNAGG 1 cut(s) 921
BaeGI GKGCMC 1 cut(s) 1105
BanI GGYRCC 3 cut(s) 907, 980, 1038
BbrPI CACGTG 1 cut(s) 107
Bbv12I GWGCWC 1 cut(s) 919
BbvCI CCTCAGC 1 cut(s) 18
BbvI GCAGC 3 cut(s) 940, 1039, 1138
BccI CCATC 6 cut(s) 398, 431, 437, 516, 601, 939
BceAI ACGGC 3 cut(s) 71, 80, 319
BciT130I CCWGG 2 cut(s) 858, 1149
BclI TGATCA 1 cut(s) 808
BcnI CCSGG 3 cut(s) 495, 515, 680
BcoDI GTCTC 3 cut(s) 84, 856, 1147
BcuI ACTAGT 1 cut(s) 1082
BfaI CTAG 2 cut(s) 201, 1083
BfoI RGCGCY 2 cut(s) 181, 1042
BglI GCCNNNNNGGC 3 cut(s) 101, 937, 1036
BisI GCNGC 8 cut(s) 114, 117, 181, 491, 851, 929, 1028, 1127
BlsI GCNGC 8 cut(s) 115, 118, 182, 492, 852, 930, 1029, 1128
BmcAI AGTACT 2 cut(s) 895, 1081
Bme1390I CCNGG 5 cut(s) 495, 515, 680, 858, 1149
BmgT120I GGNCC 1 cut(s) 1145
BmiI GGNNCC 5 cut(s) 130, 792, 909, 982, 1040
BmrFI CCNGG 5 cut(s) 495, 515, 680, 858, 1149
BmsI GCATC 2 cut(s) 31, 1228
Bpu10I CCTNAGC 2 cut(s) 18, 1244
BpuMI CCSGG 3 cut(s) 495, 515, 680
BsaAI YACGTR 1 cut(s) 107
BsaBI GATNNNNATC 1 cut(s) 949
BsaHI GRCGYC 5 cut(s) 93, 171, 853, 940, 1039
BsaI GGTCTC 2 cut(s) 856, 1147
BsaJI CCNNGG 8 cut(s) 335, 494, 514, 679, 857, 1042, 1147, 1148
BsaXI ACNNNNNCTCC 4 cut(s) 149, 179, 267, 297
Bsc4I CCNNNNNNNGG 3 cut(s) 500, 601, 1283
Bse1I ACTGG 1 cut(s) 660
Bse21I CCTNAGG 1 cut(s) 921
Bse8I GATNNNNATC 1 cut(s) 949
BseBI CCWGG 2 cut(s) 858, 1149
BseDI CCNNGG 8 cut(s) 335, 494, 514, 679, 857, 1042, 1147, 1148
BseGI GGATG 6 cut(s) 22, 195, 220, 442, 640, 892
BseJI GATNNNNATC 1 cut(s) 949
BseLI CCNNNNNNNGG 3 cut(s) 500, 601, 1283
BseMII CTCAG 6 cut(s) 32, 609, 815, 912, 1221, 1235
BseNI ACTGG 1 cut(s) 660
BseRI GAGGAG 8 cut(s) 272, 291, 493, 496, 600, 803, 938, 1037
BseSI GKGCMC 1 cut(s) 1105
BseX3I CGGCCG 1 cut(s) 491
BseXI GCAGC 3 cut(s) 940, 1039, 1138
Bsh1285I CGRYCG 1 cut(s) 494
BshFI GGCC 7 cut(s) 493, 513, 594, 625, 840, 1146, 1297
BshNI GGYRCC 3 cut(s) 907, 980, 1038
BsiEI CGRYCG 1 cut(s) 494
BsiHKAI GWGCWC 1 cut(s) 919
BsiSI CCGG 4 cut(s) 168, 494, 514, 679
BslFI GGGAC 2 cut(s) 481, 624
BslI CCNNNNNNNGG 3 cut(s) 500, 601, 1283
BsmAI GTCTC 3 cut(s) 84, 856, 1147
BsmBI CGTCTC 1 cut(s) 84
BsmFI GGGAC 2 cut(s) 481, 624
BsnI GGCC 7 cut(s) 493, 513, 594, 625, 840, 1146, 1297
Bso31I GGTCTC 2 cut(s) 856, 1147
Bsp1286I GDGCHC 2 cut(s) 919, 1105
Bsp143I GATC 2 cut(s) 808, 950
BspANI GGCC 7 cut(s) 493, 513, 594, 625, 840, 1146, 1297
BspCNI CTCAG 6 cut(s) 31, 610, 814, 913, 1220, 1236
BspLI GGNNCC 5 cut(s) 130, 792, 909, 982, 1040
BspQI GCTCTTC 1 cut(s) 1116
BspT107I GGYRCC 3 cut(s) 907, 980, 1038
BspTNI GGTCTC 2 cut(s) 856, 1147
BsrBI CCGCTC 1 cut(s) 547
BsrI ACTGG 1 cut(s) 660
BssECI CCNNGG 8 cut(s) 335, 494, 514, 679, 857, 1042, 1147, 1148
BssMI GATC 2 cut(s) 808, 950
BssNI GRCGYC 5 cut(s) 93, 171, 853, 940, 1039
Bst2UI CCWGG 2 cut(s) 858, 1149
Bst4CI ACNGT 1 cut(s) 1195
Bst6I CTCTTC 3 cut(s) 502, 564, 1116
BstACI GRCGYC 5 cut(s) 93, 171, 853, 940, 1039
BstAPI GCANNNNNTGC 1 cut(s) 78
BstBAI YACGTR 1 cut(s) 107
BstDEI CTNAG 9 cut(s) 18, 618, 801, 921, 1207, 1227, 1244, 1257, 1307
BstDSI CCRYGG 1 cut(s) 335
BstF5I GGATG 6 cut(s) 22, 195, 220, 442, 640, 892
BstH2I RGCGCY 2 cut(s) 181, 1042
BstHHI GCGC 3 cut(s) 180, 343, 1041
BstKTI GATC 2 cut(s) 811, 953
BstMAI GTCTC 3 cut(s) 84, 856, 1147
BstMBI GATC 2 cut(s) 808, 950
BstMCI CGRYCG 1 cut(s) 494
BstNI CCWGG 2 cut(s) 858, 1149
BstSCI CCNGG 5 cut(s) 493, 513, 678, 856, 1147
BstSLI GKGCMC 1 cut(s) 1105
BstV1I GCAGC 3 cut(s) 940, 1039, 1138
BstZI CGGCCG 1 cut(s) 491
Bsu36I CCTNAGG 1 cut(s) 921
BsuRI GGCC 7 cut(s) 493, 513, 594, 625, 840, 1146, 1297
BtgI CCRYGG 1 cut(s) 335
BtsCI GGATG 6 cut(s) 22, 195, 220, 442, 640, 892
CaiI CAGNNNCTG 2 cut(s) 1243, 1314
CfoI GCGC 3 cut(s) 180, 343, 1041
Cfr13I GGNCC 1 cut(s) 1145
CseI GACGC 4 cut(s) 101, 160, 842, 929
Csp6I GTAC 5 cut(s) 894, 908, 981, 995, 1080
CviAII CATG 5 cut(s) 142, 344, 631, 806, 1064
CviQI GTAC 5 cut(s) 894, 908, 981, 995, 1080
DdeI CTNAG 9 cut(s) 18, 618, 801, 921, 1207, 1227, 1244, 1257, 1307
DinI GGCGCC 1 cut(s) 1040
DpnI GATC 2 cut(s) 810, 952
DpnII GATC 2 cut(s) 808, 950
DrdI GACNNNNNNGTC 1 cut(s) 1198
DseDI GACNNNNNNGTC 1 cut(s) 1198
EaeI YGGCCR 1 cut(s) 491
EagI CGGCCG 1 cut(s) 491
Eam1104I CTCTTC 3 cut(s) 502, 564, 1116
EarI CTCTTC 3 cut(s) 502, 564, 1116
EciI GGCGGA 2 cut(s) 134, 213
EclXI CGGCCG 1 cut(s) 491
Eco147I AGGCCT 1 cut(s) 1297
Eco31I GGTCTC 2 cut(s) 856, 1147
Eco52I CGGCCG 1 cut(s) 491
Eco57I CTGAAG 1 cut(s) 14
Eco72I CACGTG 1 cut(s) 107
Eco81I CCTNAGG 1 cut(s) 921
EcoRII CCWGG 2 cut(s) 856, 1147
EgeI GGCGCC 1 cut(s) 1040
EheI GGCGCC 1 cut(s) 1040
Esp3I CGTCTC 1 cut(s) 84
FaeI CATG 5 cut(s) 145, 347, 634, 809, 1067
FaqI GGGAC 2 cut(s) 481, 624
FatI CATG 5 cut(s) 141, 343, 630, 805, 1063
FauI CCCGC 1 cut(s) 492
FbaI TGATCA 1 cut(s) 808
FblI GTMKAC 1 cut(s) 207
Fnu4HI GCNGC 8 cut(s) 114, 117, 181, 491, 851, 929, 1028, 1127
FokI GGATG 6 cut(s) 9, 182, 207, 449, 647, 899
Fsp4HI GCNGC 8 cut(s) 114, 117, 181, 491, 851, 929, 1028, 1127
FspBI CTAG 2 cut(s) 201, 1083
GlaI GCGC 3 cut(s) 179, 342, 1040
GluI GCNGC 8 cut(s) 114, 117, 181, 491, 851, 929, 1028, 1127
HaeII RGCGCY 2 cut(s) 181, 1042
HaeIII GGCC 7 cut(s) 493, 513, 594, 625, 840, 1146, 1297
HapII CCGG 4 cut(s) 168, 494, 514, 679
HgaI GACGC 4 cut(s) 101, 160, 842, 929
HhaI GCGC 3 cut(s) 180, 343, 1041
Hin1I GRCGYC 5 cut(s) 93, 171, 853, 940, 1039
Hin1II CATG 5 cut(s) 145, 347, 634, 809, 1067
Hin6I GCGC 3 cut(s) 178, 341, 1039
HinP1I GCGC 3 cut(s) 178, 341, 1039
HinfI GANTC 3 cut(s) 473, 718, 1175
HpaII CCGG 4 cut(s) 168, 494, 514, 679
HphI GGTGA 3 cut(s) 452, 616, 746
Hpy166II GTNNAC 2 cut(s) 208, 1274
Hpy188I TCNGA 5 cut(s) 89, 619, 1180, 1210, 1310
Hpy188III TCNNGA 2 cut(s) 899, 920
Hpy8I GTNNAC 2 cut(s) 208, 1274
Hpy99I CGWCG 3 cut(s) 176, 945, 1143
HpyAV CCTTC 6 cut(s) 38, 259, 266, 480, 575, 584
HpyCH4III ACNGT 1 cut(s) 1195
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 3 cut(s) 43, 81, 296
HpyF3I CTNAG 9 cut(s) 18, 618, 801, 921, 1207, 1227, 1244, 1257, 1307
HpySE526I ACGT 1 cut(s) 106
Hsp92I GRCGYC 5 cut(s) 93, 171, 853, 940, 1039
Hsp92II CATG 5 cut(s) 145, 347, 634, 809, 1067
HspAI GCGC 3 cut(s) 178, 341, 1039
KasI GGCGCC 1 cut(s) 1038
KpnI GGTACC 2 cut(s) 911, 984
Ksp22I TGATCA 1 cut(s) 808
Kzo9I GATC 2 cut(s) 808, 950
LguI GCTCTTC 1 cut(s) 1116
LmnI GCTCC 5 cut(s) 544, 790, 922, 925, 1024
Lsp1109I GCAGC 3 cut(s) 940, 1039, 1138
LweI GCATC 2 cut(s) 31, 1228
MaeI CTAG 2 cut(s) 201, 1083
MaeII ACGT 1 cut(s) 106
MaeIII GTNAC 2 cut(s) 651, 1183
MalI GATC 2 cut(s) 810, 952
MbiI CCGCTC 1 cut(s) 547
MboI GATC 2 cut(s) 808, 950
MboII GAAGA 9 cut(s) 382, 519, 548, 578, 581, 707, 749, 782, 1133
MhlI GDGCHC 2 cut(s) 919, 1105
MluCI AATT 3 cut(s) 377, 418, 424
Mly113I GGCGCC 1 cut(s) 1039
MlyI GAGTC 1 cut(s) 482
MmeI TCCRAC 1 cut(s) 211
MroXI GAANNNNTTC 1 cut(s) 717
MseI TTAA 3 cut(s) 162, 423, 552
MspI CCGG 4 cut(s) 168, 494, 514, 679
MspR9I CCNGG 5 cut(s) 495, 515, 680, 858, 1149
MvaI CCWGG 2 cut(s) 858, 1149
NarI GGCGCC 1 cut(s) 1039
NciI CCSGG 3 cut(s) 495, 515, 680
NdeII GATC 2 cut(s) 808, 950
NlaIII CATG 5 cut(s) 145, 347, 634, 809, 1067
NlaIV GGNNCC 5 cut(s) 130, 792, 909, 982, 1040
NmeAIII GCCGAG 1 cut(s) 1067
PasI CCCWGGG 1 cut(s) 1148
PceI AGGCCT 1 cut(s) 1297
PciSI GCTCTTC 1 cut(s) 1116
PdmI GAANNNNTTC 1 cut(s) 717
PfeI GAWTC 2 cut(s) 718, 1175
PflFI GACNNNGTC 1 cut(s) 472
PkrI GCNGC 8 cut(s) 115, 118, 182, 492, 852, 930, 1029, 1128
PleI GAGTC 1 cut(s) 481
PluTI GGCGCC 1 cut(s) 1042
PmaCI CACGTG 1 cut(s) 107
PmlI CACGTG 1 cut(s) 107
PpsI GAGTC 1 cut(s) 481
Ppu21I YACGTR 1 cut(s) 107
PshBI ATTAAT 1 cut(s) 552
PsiI TTATAA 1 cut(s) 749
Psp6I CCWGG 2 cut(s) 856, 1147
PspCI CACGTG 1 cut(s) 107
PspGI CCWGG 2 cut(s) 856, 1147
PspN4I GGNNCC 5 cut(s) 130, 792, 909, 982, 1040
PspPI GGNCC 1 cut(s) 1145
PstNI CAGNNNCTG 2 cut(s) 1243, 1314
PsyI GACNNNGTC 1 cut(s) 472
RsaI GTAC 5 cut(s) 895, 909, 982, 996, 1081
RsaNI GTAC 5 cut(s) 894, 908, 981, 995, 1080
SapI GCTCTTC 1 cut(s) 1116
SaqAI TTAA 3 cut(s) 162, 423, 552
SatI GCNGC 8 cut(s) 114, 117, 181, 491, 851, 929, 1028, 1127
Sau3AI GATC 2 cut(s) 808, 950
Sau96I GGNCC 1 cut(s) 1145
ScaI AGTACT 2 cut(s) 895, 1081
SchI GAGTC 1 cut(s) 482
ScrFI CCNGG 5 cut(s) 495, 515, 680, 858, 1149
SduI GDGCHC 2 cut(s) 919, 1105
SfaNI GCATC 2 cut(s) 31, 1228
SfoI GGCGCC 1 cut(s) 1040
SpeI ACTAGT 1 cut(s) 1082
Sse9I AATT 3 cut(s) 377, 418, 424
SseBI AGGCCT 1 cut(s) 1297
SspDI GGCGCC 1 cut(s) 1038
SspMI CTAG 2 cut(s) 201, 1083
StuI AGGCCT 1 cut(s) 1297
StyD4I CCNGG 5 cut(s) 493, 513, 678, 856, 1147
TaaI ACNGT 1 cut(s) 1195
TaiI ACGT 1 cut(s) 109
TaqI TCGA 8 cut(s) 174, 236, 302, 476, 721, 943, 1114, 1300
TasI AATT 3 cut(s) 377, 418, 424
TatI WGTACW 2 cut(s) 893, 1079
TauI GCSGC 5 cut(s) 116, 119, 183, 493, 853
TfiI GAWTC 2 cut(s) 718, 1175
Tru1I TTAA 3 cut(s) 162, 423, 552
Tru9I TTAA 3 cut(s) 162, 423, 552
TseI GCWGC 3 cut(s) 928, 1027, 1126
TspDTI ATGAA 4 cut(s) 158, 353, 570, 756
Tth111I GACNNNGTC 1 cut(s) 472
VspI ATTAAT 1 cut(s) 552
XmiI GTMKAC 1 cut(s) 207
XmnI GAANNNNTTC 1 cut(s) 717
XspI CTAG 2 cut(s) 201, 1083
ZrmI AGTACT 2 cut(s) 895, 1081
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.