Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0013660

Physical Location & Seq

Genomic Coordinates Forward (+)

1410794 .. 1411009

Gene Structure 216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG017300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGTCGTGCGACATGCATTATTGCCCTCGATCAATAACCACAGCAACTCAACAAGGCCCATCCCCAACCTTGGAGCTCTCCCATCATCGGACCTCCGAGAAAACAGACAGAGAGCTCAAGACCTTAATAAAACCATCGGCAGATGTCAAACCGACCTCGAAAGTAGCCCAAGTTGCGACAAGCGCGGGGGGCAATGCTGCAATCGTGTGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

71

Amino Acids

7.65

Weight (kDa)

8.74

Isoelectric Point (pI)

53.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013660)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g32502
malus_domestica	MD13G1024700.v1.1
prunus_persica	Prupe.1G325800_v2.0.a1 Prupe.1G325800_v2.0.a1 Prupe.5G231500_v2.0.a1
pyrus_communis	pycom13g02300
rosa_chinensis	RchiOBHm_Chr4g0441381
rosa_laevigata	RLG00000005431 RLG00000006096
rosa_roxburghii	Rroxscaffold_5G00382260
rosa_rugosa	Rorug04G0332900
rosa_samantha	Rh4AG384900 Rh4BG398900 Rh4CG414000 Rh4DG391600 Rh7BG016700 Rh7DG017300
rosa_wichuraiana	Rw4G033230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	185
AciI	CCGC	1 cut(s)	185
AfiI	CCNNNNNNNGG	2 cut(s)	70, 87
AluBI	AGCT	2 cut(s)	76, 115
AluI	AGCT	2 cut(s)	76, 115
Alw21I	GWGCWC	2 cut(s)	78, 117
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	185
AspS9I	GGNCC	2 cut(s)	56, 90
AvaII	GGWCC	1 cut(s)	90
BanII	GRGCYC	2 cut(s)	78, 117
Bbv12I	GWGCWC	2 cut(s)	78, 117
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	3 cut(s)	67, 90, 142
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	90
BmgT120I	GGNCC	2 cut(s)	56, 90
BpuEI	CTTGAG	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 87
Bse3DI	GCAATG	1 cut(s)	199
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	59
BseLI	CCNNNNNNNGG	2 cut(s)	70, 87
BseMI	GCAATG	1 cut(s)	199
BseXI	GCAGC	1 cut(s)	184
Bsh1236I	CGCG	1 cut(s)	185
BshFI	GGCC	1 cut(s)	57
BsiHKAI	GWGCWC	2 cut(s)	78, 117
BslI	CCNNNNNNNGG	2 cut(s)	70, 87
BsnI	GGCC	1 cut(s)	57
Bsp1286I	GDGCHC	2 cut(s)	78, 117
Bsp143I	GATC	1 cut(s)	29
BspACI	CCGC	1 cut(s)	185
BspANI	GGCC	1 cut(s)	57
BspFNI	CGCG	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	199
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	1 cut(s)	29
BssT1I	CCWWGG	1 cut(s)	69
BstF5I	GGATG	1 cut(s)	59
BstFNI	CGCG	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	1 cut(s)	32
BstMBI	GATC	1 cut(s)	29
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 182, 189
BstNSI	RCATGY	1 cut(s)	16
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	59
CfoI	GCGC	1 cut(s)	185
Cfr13I	GGNCC	2 cut(s)	56, 90
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	5 cut(s)	57, 76, 115, 167, 211
CviKI_1	RGCY	5 cut(s)	57, 76, 115, 167, 211
DpnI	GATC	1 cut(s)	31
DpnII	GATC	1 cut(s)	29
Ecl136II	GAGCTC	2 cut(s)	76, 115
Eco130I	CCWWGG	1 cut(s)	69
Eco24I	GRGCYC	2 cut(s)	78, 117
Eco47I	GGWCC	1 cut(s)	90
Eco53kI	GAGCTC	2 cut(s)	76, 115
EcoICRI	GAGCTC	2 cut(s)	76, 115
EcoT14I	CCWWGG	1 cut(s)	69
EcoT22I	ATGCAT	1 cut(s)	18
EcoT38I	GRGCYC	2 cut(s)	78, 117
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	1 cut(s)	16
FaiI	YATR	1 cut(s)	14
FatI	CATG	1 cut(s)	12
FauI	CCCGC	1 cut(s)	178
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	1 cut(s)	46
FriOI	GRGCYC	2 cut(s)	78, 117
Fsp4HI	GCNGC	1 cut(s)	198
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	57
HhaI	GCGC	1 cut(s)	185
Hin1II	CATG	1 cut(s)	16
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
Hpy188I	TCNGA	2 cut(s)	90, 97
Hpy188III	TCNNGA	1 cut(s)	118
HpyCH4V	TGCA	2 cut(s)	16, 200
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 182, 189
Hsp92II	CATG	1 cut(s)	16
HspAI	GCGC	1 cut(s)	183
Kzo9I	GATC	1 cut(s)	29
LmnI	GCTCC	1 cut(s)	73
Lsp1109I	GCAGC	1 cut(s)	184
MalI	GATC	1 cut(s)	31
MboI	GATC	1 cut(s)	29
MhlI	GDGCHC	2 cut(s)	78, 117
MnlI	CCTC	3 cut(s)	36, 103, 166
Mph1103I	ATGCAT	1 cut(s)	18
MseI	TTAA	1 cut(s)	125
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	3 cut(s)	173, 182, 189
NdeII	GATC	1 cut(s)	29
NlaIII	CATG	1 cut(s)	16
NsiI	ATGCAT	1 cut(s)	18
NspI	RCATGY	1 cut(s)	16
PkrI	GCNGC	1 cut(s)	199
Psp124BI	GAGCTC	2 cut(s)	78, 117
PspPI	GGNCC	2 cut(s)	56, 90
SacI	GAGCTC	2 cut(s)	78, 117
SaqAI	TTAA	1 cut(s)	125
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	1 cut(s)	29
Sau96I	GGNCC	2 cut(s)	56, 90
SduI	GDGCHC	2 cut(s)	78, 117
SetI	ASST	6 cut(s)	71, 78, 95, 117, 125, 158
SinI	GGWCC	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
SsiI	CCGC	1 cut(s)	185
SstI	GAGCTC	2 cut(s)	78, 117
StyI	CCWWGG	1 cut(s)	69
TaqI	TCGA	2 cut(s)	28, 158
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TseI	GCWGC	1 cut(s)	197
VpaK11BI	GGWCC	1 cut(s)	90
XceI	RCATGY	1 cut(s)	16
Zsp2I	ATGCAT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.