Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0015893

Physical Location & Seq

Genomic Coordinates Reverse (-)

31925831 .. 31929607

Gene Structure 3777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g33880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGAGATCCCACAGTTTCTGGAGTCCCAAGAACATGAAGCTGTTGACAAGTCTGCACAGAAGGTACCAATTCTGCCTTCTGATGCAATCAAAGAAAAAGAAGCAGGGCCTCCTCACGAGGCTTTGTTCCTTATCTTAACTTACCTTCCTCTATTTGAGCTTCTTGCCATGAACCAAGTTTGCACTACACTGAGAGATGCAGTAAACAAGGATGTGATCTCATGGCTGAACATCATGGTTGAAAAACCGTTGAGCTTGAAATTGTCCGATGCGATCTTGATGAAACTTACATCCAAGGCTAATGGAAGGTTGAGAAGTTTGGCTCTAATGAAATGTGCAAAGATTACAGATAACGGGCTTCAACAGGTTGTGGAGCAGAATCCTCTGATCAGCAAGCTCTATCTGCCAGCCTGCACTGGCTTAACACCAGAAGGAGTTATACAAGCTGTGAAGACATTATCTGAGCATGGTCACTGCTTAAAGTCCATAATGATAAATGGCATCTACAACATAAACAAACAGCACCTTGAAACACTCAGGTCTTATCTTGATGAAATGAATCTCGACACAAAAAAGGAGCAGCCGGGATCATGCCCTCTCTTATTTCTTGAGTACATGGACTCGCCAACACTCAGACATGACAAGGGTCACACCACAATCGACCTTGAAGTTTGCCCAAAATGTGATGAGGTGAGGATGGTTTTCGATTGTCCAAGGTGGGCATGCAAGAGAATGTTAGAAAGGTCAGTGACTGAATGTAGGGGATGCAAGTTTTGCATTCTAAGGTGTCTGGAGTGTGGTGGCTGCGTCGATTCTCAAGAAATTGAAGAGGCTGTTTGTGGTGATATCTTGTGTTCAGATTGCTGGCTTCACCTTCCCAAATGTAACTTCTGCAACAAGCCATACTGTAAGCAACACTCTGATAACAAGTGCTCCACTTCAGGATCTACAGGTTTCGTCTGTGAGGTTTGTTATGCAAAGTACATTGTAAACTTGCCAAAGTATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

337

Amino Acids

37.82

Weight (kDa)

6.16

Isoelectric Point (pI)

53.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01620
fragaria_vesca	FvH4_4g33880
malus_domestica	MD13G1030300.v1.1
prunus_persica	Prupe.1G331200_v2.0.a1
pyrus_communis	pycom13g01860
rosa_chinensis	RchiOBHm_Chr4g0443391
rosa_laevigata	RLG00000005932
rosa_multiflora	Rmu_ssc0000122.1_g000014
rosa_roxburghii	Rroxscaffold_5G00383950
rosa_rugosa	Rorug04G0346000
rosa_samantha	Rh4AG401300 Rh4BG412700 Rh4CG428400 Rh4DG408500
rosa_wichuraiana	Rw4G034600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	64
AccB1I	GGYRCC	1 cut(s)	64
AclWI	GGATC	2 cut(s)	595, 952
AcuI	CTGAAG	1 cut(s)	924
AfaI	GTAC	3 cut(s)	66, 614, 983
AgsI	TTSAA	6 cut(s)	242, 259, 362, 530, 668, 827
AjuI	GAANNNNNNNTTGG	4 cut(s)	61, 93, 872, 904
AluBI	AGCT	5 cut(s)	41, 160, 255, 397, 446
AluI	AGCT	5 cut(s)	41, 160, 255, 397, 446
Alw21I	GWGCWC	1 cut(s)	935
AlwI	GGATC	2 cut(s)	595, 952
AlwNI	CAGNNNCTG	2 cut(s)	19, 752
AoxI	GGCC	1 cut(s)	107
ApeKI	GCWGC	2 cut(s)	580, 804
Asp718I	GGTACC	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	107
AsuC2I	CCSGG	1 cut(s)	585
AsuHPI	GGTGA	3 cut(s)	703, 854, 863
BanI	GGYRCC	1 cut(s)	64
BarI	GAAGNNNNNNTAC	2 cut(s)	423, 455
BauI	CACGAG	1 cut(s)	116
BbsI	GAAGAC	1 cut(s)	458
Bbv12I	GWGCWC	1 cut(s)	935
BbvI	GCAGC	2 cut(s)	592, 791
BccI	CCATC	1 cut(s)	691
BclI	TGATCA	1 cut(s)	387
BcnI	CCSGG	1 cut(s)	585
BfmI	CTRYAG	1 cut(s)	948
BisI	GCNGC	2 cut(s)	581, 805
BlsI	GCNGC	2 cut(s)	582, 806
Bme1390I	CCNGG	1 cut(s)	585
BmgT120I	GGNCC	1 cut(s)	107
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	585
BmsI	GCATC	5 cut(s)	73, 187, 259, 510, 755
BoxI	GACNNNNGTC	1 cut(s)	645
BpiI	GAAGAC	1 cut(s)	458
BpmI	CTGGAG	2 cut(s)	41, 812
BpuEI	CTTGAG	2 cut(s)	629, 801
BpuMI	CCSGG	1 cut(s)	585
BsaJI	CCNNGG	2 cut(s)	294, 713
BsaXI	ACNNNNNCTCC	2 cut(s)	917, 947
Bse1I	ACTGG	1 cut(s)	421
BseDI	CCNNGG	2 cut(s)	294, 713
BseGI	GGATG	4 cut(s)	217, 290, 702, 770
BseMII	CTCAG	4 cut(s)	182, 453, 550, 646
BseNI	ACTGG	1 cut(s)	421
BseRI	GAGGAG	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	592, 791
BsgI	GTGCAG	2 cut(s)	39, 397
BshFI	GGCC	1 cut(s)	109
BshNI	GGYRCC	1 cut(s)	64
BsiHKAI	GWGCWC	1 cut(s)	935
BsiSI	CCGG	1 cut(s)	584
BslFI	GGGAC	1 cut(s)	10
BsmFI	GGGAC	1 cut(s)	10
BsmI	GAATGC	1 cut(s)	777
BsnI	GGCC	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	935
Bsp143I	GATC	6 cut(s)	6, 216, 273, 387, 587, 944
BspANI	GGCC	1 cut(s)	109
BspCNI	CTCAG	4 cut(s)	183, 454, 549, 645
BspLI	GGNNCC	1 cut(s)	66
BspPI	GGATC	2 cut(s)	595, 952
BspT107I	GGYRCC	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	421
BssECI	CCNNGG	2 cut(s)	294, 713
BssMI	GATC	6 cut(s)	6, 216, 273, 387, 587, 944
BssSI	CACGAG	1 cut(s)	116
BssT1I	CCWWGG	2 cut(s)	294, 713
Bst2BI	CACGAG	1 cut(s)	116
Bst4CI	ACNGT	3 cut(s)	15, 249, 908
Bst6I	CTCTTC	1 cut(s)	822
BstAPI	GCANNNNNTGC	1 cut(s)	774
BstC8I	GCNNGC	5 cut(s)	395, 408, 412, 724, 866
BstDEI	CTNAG	5 cut(s)	191, 462, 536, 632, 782
BstF5I	GGATG	4 cut(s)	217, 290, 702, 770
BstKTI	GATC	6 cut(s)	9, 219, 276, 390, 590, 947
BstMBI	GATC	6 cut(s)	6, 216, 273, 387, 587, 944
BstMWI	GCNNNNNNNGC	2 cut(s)	403, 774
BstNSI	RCATGY	1 cut(s)	726
BstPAI	GACNNNNGTC	1 cut(s)	645
BstSCI	CCNGG	1 cut(s)	583
BstSFI	CTRYAG	1 cut(s)	948
BstV1I	GCAGC	2 cut(s)	592, 791
BstV2I	GAAGAC	1 cut(s)	458
BstX2I	RGATCY	2 cut(s)	6, 944
BstYI	RGATCY	2 cut(s)	6, 944
BsuRI	GGCC	1 cut(s)	109
BtsCI	GGATG	4 cut(s)	217, 290, 702, 770
BtsI	GCAGTG	1 cut(s)	472
BtsIMutI	CAGTG	4 cut(s)	188, 414, 472, 753
Cac8I	GCNNGC	5 cut(s)	395, 408, 412, 724, 866
CaiI	CAGNNNCTG	2 cut(s)	19, 752
Cfr13I	GGNCC	1 cut(s)	107
CseI	GACGC	1 cut(s)	796
Csp6I	GTAC	3 cut(s)	65, 613, 982
CviAII	CATG	9 cut(s)	35, 169, 222, 235, 467, 591, 616, 638, 723
CviQI	GTAC	3 cut(s)	65, 613, 982
DdeI	CTNAG	5 cut(s)	191, 462, 536, 632, 782
DpnI	GATC	6 cut(s)	8, 218, 275, 389, 589, 946
DpnII	GATC	6 cut(s)	6, 216, 273, 387, 587, 944
Eam1104I	CTCTTC	1 cut(s)	822
EarI	CTCTTC	1 cut(s)	822
Eco130I	CCWWGG	2 cut(s)	294, 713
Eco32I	GATATC	1 cut(s)	847
Eco57I	CTGAAG	1 cut(s)	924
EcoO109I	RGGNCCY	1 cut(s)	107
EcoRV	GATATC	1 cut(s)	847
EcoT14I	CCWWGG	2 cut(s)	294, 713
ErhI	CCWWGG	2 cut(s)	294, 713
FaeI	CATG	9 cut(s)	38, 172, 225, 238, 470, 594, 619, 641, 726
FaqI	GGGAC	1 cut(s)	10
FatI	CATG	9 cut(s)	34, 168, 221, 234, 466, 590, 615, 637, 722
FbaI	TGATCA	1 cut(s)	387
Fnu4HI	GCNGC	2 cut(s)	581, 805
FokI	GGATG	4 cut(s)	224, 277, 709, 777
Fsp4HI	GCNGC	2 cut(s)	581, 805
GluI	GCNGC	2 cut(s)	581, 805
GsuI	CTGGAG	2 cut(s)	41, 812
HaeIII	GGCC	1 cut(s)	109
HapII	CCGG	1 cut(s)	584
HgaI	GACGC	1 cut(s)	796
Hin1II	CATG	9 cut(s)	38, 172, 225, 238, 470, 594, 619, 641, 726
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HinfI	GANTC	5 cut(s)	23, 379, 559, 620, 812
HpaII	CCGG	1 cut(s)	584
HphI	GGTGA	3 cut(s)	703, 854, 863
Hpy166II	GTNNAC	3 cut(s)	46, 205, 991
Hpy188I	TCNGA	7 cut(s)	82, 268, 387, 463, 635, 859, 922
Hpy188III	TCNNGA	9 cut(s)	20, 116, 277, 548, 563, 608, 791, 818, 942
Hpy8I	GTNNAC	3 cut(s)	46, 205, 991
Hpy99I	CGWCG	1 cut(s)	812
HpyAV	CCTTC	6 cut(s)	55, 87, 155, 300, 425, 884
HpyCH4III	ACNGT	3 cut(s)	15, 249, 908
HpyF10VI	GCNNNNNNNGC	2 cut(s)	403, 774
HpyF3I	CTNAG	5 cut(s)	191, 462, 536, 632, 782
Hsp92II	CATG	9 cut(s)	38, 172, 225, 238, 470, 594, 619, 641, 726
KpnI	GGTACC	1 cut(s)	68
Ksp22I	TGATCA	1 cut(s)	387
Kzo9I	GATC	6 cut(s)	6, 216, 273, 387, 587, 944
LmnI	GCTCC	3 cut(s)	373, 577, 938
Lsp1109I	GCAGC	2 cut(s)	592, 791
LweI	GCATC	5 cut(s)	73, 187, 259, 510, 755
MaeIII	GTNAC	4 cut(s)	470, 647, 748, 884
MalI	GATC	6 cut(s)	8, 218, 275, 389, 589, 946
MboI	GATC	6 cut(s)	6, 216, 273, 387, 587, 944
MboII	GAAGA	2 cut(s)	463, 839
MflI	RGATCY	2 cut(s)	6, 944
MhlI	GDGCHC	1 cut(s)	935
MluCI	AATT	3 cut(s)	69, 260, 822
MlyI	GAGTC	2 cut(s)	32, 614
MseI	TTAA	3 cut(s)	137, 422, 479
MspI	CCGG	1 cut(s)	584
MspR9I	CCNGG	1 cut(s)	585
Mva1269I	GAATGC	1 cut(s)	777
MwoI	GCNNNNNNNGC	2 cut(s)	403, 774
NciI	CCSGG	1 cut(s)	585
NdeII	GATC	6 cut(s)	6, 216, 273, 387, 587, 944
NlaIII	CATG	9 cut(s)	38, 172, 225, 238, 470, 594, 619, 641, 726
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	3 cut(s)	470, 647, 748
NspI	RCATGY	1 cut(s)	726
PaeI	GCATGC	1 cut(s)	726
PctI	GAATGC	1 cut(s)	777
PfeI	GAWTC	3 cut(s)	379, 559, 812
PkrI	GCNGC	2 cut(s)	582, 806
PleI	GAGTC	2 cut(s)	31, 614
PpsI	GAGTC	2 cut(s)	31, 614
PshAI	GACNNNNGTC	1 cut(s)	645
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	107
PstNI	CAGNNNCTG	2 cut(s)	19, 752
PsuI	RGATCY	2 cut(s)	6, 944
RsaI	GTAC	3 cut(s)	66, 614, 983
RsaNI	GTAC	3 cut(s)	65, 613, 982
SaqAI	TTAA	3 cut(s)	137, 422, 479
SatI	GCNGC	2 cut(s)	581, 805
Sau3AI	GATC	6 cut(s)	6, 216, 273, 387, 587, 944
Sau96I	GGNCC	1 cut(s)	107
SchI	GAGTC	2 cut(s)	32, 614
ScrFI	CCNGG	1 cut(s)	585
SduI	GDGCHC	1 cut(s)	935
SfaNI	GCATC	5 cut(s)	73, 187, 259, 510, 755
SfcI	CTRYAG	1 cut(s)	948
SmlI	CTYRAG	2 cut(s)	608, 816
SmoI	CTYRAG	2 cut(s)	608, 816
SphI	GCATGC	1 cut(s)	726
Sse9I	AATT	3 cut(s)	69, 260, 822
StyD4I	CCNGG	1 cut(s)	583
StyI	CCWWGG	2 cut(s)	294, 713
TaaI	ACNGT	3 cut(s)	15, 249, 908
TaqI	TCGA	4 cut(s)	564, 660, 705, 810
TasI	AATT	3 cut(s)	69, 260, 822
TatI	WGTACW	2 cut(s)	612, 981
TfiI	GAWTC	3 cut(s)	379, 559, 812
Tru1I	TTAA	3 cut(s)	137, 422, 479
Tru9I	TTAA	3 cut(s)	137, 422, 479
TscAI	CASTG	4 cut(s)	195, 421, 479, 753
TseFI	GTSAC	3 cut(s)	470, 647, 748
TseI	GCWGC	2 cut(s)	580, 804
Tsp45I	GTSAC	3 cut(s)	470, 647, 748
TspDTI	ATGAA	6 cut(s)	51, 185, 296, 344, 567, 572
TspRI	CASTG	4 cut(s)	195, 421, 479, 753
XceI	RCATGY	1 cut(s)	726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.