RLG00000005932

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0015893
Physical Location & Seq
Forward (+)
2890200 .. 2891366
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005932

Sequence Viewer

Length: 1026 bp
ATGGAGATCCCACAGTTTCTGGAGTACCAAGAACATGAAGCTGTTGACAACTCTGCACAGAAGGTACCAATTCTGCCTTCTGATGCAATCAAAGAAAAAGAAGCAGGGCCACCTCACGAAGCTTTGTTCCTTATCTTAACTTACCTTCCTCTGTTTGAGCTTCTTGCCATGAATCAAGTTTGCACTTCACTGAGAGATGCAGTAAACAAGGATGTGCTCTCATGGTTGAACATCATCGTTGATAAGCCTTTGAGCTTGAAATTGTCTGATGAGATCTTGATGAAAATTACATCGAAGGCTAATGGTAGGTTGAGAACTTTGGCTCTCATGAACTGTGCAAAGATTACAGATAACGGGCTTCAACAGGTTGTGGAGCAGAATCCTCTGATCAGCAAGCTCTATCTACCAGCTTGCACTGGCTTAACACCCGAAGGAGTCACACGAGCTGTGAAGACATTATCTGAACATGGTCACTGCTTAAAGTCCATAATGATAAATGGCATCTACAACATAAACAAACAGCACCTTGAAACACTAGAGTCTTATCTTCATGAAATGAATCTCGACACAAAAAAAGAGCAGCCGGGATCATGGCCTCTCCTATTACTTGAGTACATGGACTCGCCAACATTCAGACATGACAAAGGTCACACCACAATTGACCTTGAAGTTTGCCCGAAATGCGACGAGGTGAGGATGGTTTTCGACTGTCCAAGGTGGGCGTGCAAGAGAATGATAGAAAGGTCAACGACTCGGTGTAGAGGATGCAAGTTTTGCATTCTGAGGTGCCAAGAGTGTGGTGGATGCGTCGATTCTCAAGAAACTGAAGAGGCTGTTTGTGATGATATCTTGTGCTCAGATTGCTGGCTCCACCTTCCCAAATGTAACTTCTGCAACAAGCCATATTGCAAGCAACACGCTGATAACAAGTGCTGCACTTCAGGATCCACAGGTTTTGTCTGTGAGGTTTGTTATGCAAAGTACATTGTAGACTTGCCCAGTATTGTTGAATATGTTGATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

342

Amino Acids

38.64

Weight (kDa)

5.53

Isoelectric Point (pI)

46.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 38 - 75 5.6e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01620
fragaria_vesca FvH4_4g33880
malus_domestica MD13G1030300.v1.1
prunus_persica Prupe.1G331200_v2.0.a1
pyrus_communis pycom13g01860
rosa_chinensis RchiOBHm_Chr4g0443391
rosa_laevigata RLG00000005932
rosa_multiflora Rmu_ssc0000122.1_g000014
rosa_roxburghii Rroxscaffold_5G00383950
rosa_rugosa Rorug04G0346000
rosa_samantha Rh4AG401300 Rh4BG412700 Rh4CG428400 Rh4DG408500
rosa_wichuraiana Rw4G034600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 64
AccB1I GGYRCC 2 cut(s) 64, 786
AccI GTMKAC 1 cut(s) 990
AclWI GGATC 3 cut(s) 595, 939, 952
AcuI CTGAAG 2 cut(s) 846, 924
AfaI GTAC 4 cut(s) 26, 66, 614, 983
AgsI TTSAA 6 cut(s) 229, 259, 362, 530, 668, 1010
AjuI GAANNNNNNNTTGG 4 cut(s) 61, 93, 872, 904
AluBI AGCT 7 cut(s) 41, 122, 160, 255, 397, 410, 446
AluI AGCT 7 cut(s) 41, 122, 160, 255, 397, 410, 446
Alw21I GWGCWC 2 cut(s) 219, 857
AlwI GGATC 3 cut(s) 595, 939, 952
AlwNI CAGNNNCTG 1 cut(s) 19
AoxI GGCC 2 cut(s) 107, 593
ApeKI GCWGC 2 cut(s) 580, 933
Asp718I GGTACC 1 cut(s) 64
AspS9I GGNCC 1 cut(s) 107
AsuC2I CCSGG 1 cut(s) 585
AsuHPI GGTGA 1 cut(s) 703
BamHI GGATCC 1 cut(s) 944
BanI GGYRCC 2 cut(s) 64, 786
BauI CACGAG 1 cut(s) 441
BbsI GAAGAC 1 cut(s) 458
Bbv12I GWGCWC 2 cut(s) 219, 857
BbvI GCAGC 2 cut(s) 592, 920
BccI CCATC 1 cut(s) 691
BclI TGATCA 1 cut(s) 387
BcnI CCSGG 1 cut(s) 585
BfaI CTAG 1 cut(s) 536
BglII AGATCT 1 cut(s) 273
BisI GCNGC 2 cut(s) 581, 934
BlsI GCNGC 2 cut(s) 582, 935
Bme1390I CCNGG 1 cut(s) 585
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 4 cut(s) 66, 788, 869, 946
BmrFI CCNGG 1 cut(s) 585
BmrI ACTGGG 1 cut(s) 993
BmsI GCATC 5 cut(s) 73, 187, 510, 755, 794
BmuI ACTGGG 1 cut(s) 993
BoxI GACNNNNGTC 1 cut(s) 645
BpiI GAAGAC 1 cut(s) 458
BpmI CTGGAG 1 cut(s) 41
BpuEI CTTGAG 2 cut(s) 629, 801
BpuMI CCSGG 1 cut(s) 585
BsaJI CCNNGG 1 cut(s) 713
Bse1I ACTGG 2 cut(s) 421, 999
BseDI CCNNGG 1 cut(s) 713
BseGI GGATG 4 cut(s) 217, 702, 770, 809
BseMII CTCAG 3 cut(s) 182, 773, 870
BseNI ACTGG 2 cut(s) 421, 999
BseXI GCAGC 2 cut(s) 592, 920
BsgI GTGCAG 2 cut(s) 39, 919
BshFI GGCC 2 cut(s) 109, 595
BshNI GGYRCC 2 cut(s) 64, 786
BsiHKAI GWGCWC 2 cut(s) 219, 857
BsiSI CCGG 1 cut(s) 584
BsmI GAATGC 1 cut(s) 777
BsnI GGCC 2 cut(s) 109, 595
Bsp1286I GDGCHC 2 cut(s) 219, 857
Bsp143I GATC 5 cut(s) 6, 273, 387, 587, 944
BspANI GGCC 2 cut(s) 109, 595
BspCNI CTCAG 3 cut(s) 183, 774, 869
BspHI TCATGA 2 cut(s) 327, 550
BspLI GGNNCC 4 cut(s) 66, 788, 869, 946
BspPI GGATC 3 cut(s) 595, 939, 952
BspT107I GGYRCC 2 cut(s) 64, 786
BsrI ACTGG 2 cut(s) 421, 999
BssECI CCNNGG 1 cut(s) 713
BssMI GATC 5 cut(s) 6, 273, 387, 587, 944
BssSI CACGAG 1 cut(s) 441
BssT1I CCWWGG 1 cut(s) 713
Bst2BI CACGAG 1 cut(s) 441
Bst4CI ACNGT 3 cut(s) 15, 335, 710
Bst6I CTCTTC 1 cut(s) 822
BstAPI GCANNNNNTGC 1 cut(s) 774
BstC8I GCNNGC 5 cut(s) 395, 412, 724, 866, 911
BstDEI CTNAG 3 cut(s) 191, 782, 856
BstF5I GGATG 4 cut(s) 217, 702, 770, 809
BstKTI GATC 5 cut(s) 9, 276, 390, 590, 947
BstMBI GATC 5 cut(s) 6, 273, 387, 587, 944
BstMWI GCNNNNNNNGC 3 cut(s) 681, 774, 861
BstPAI GACNNNNGTC 1 cut(s) 645
BstSCI CCNGG 1 cut(s) 583
BstV1I GCAGC 2 cut(s) 592, 920
BstV2I GAAGAC 1 cut(s) 458
BstX2I RGATCY 3 cut(s) 6, 273, 944
BstXI CCANNNNNNTGG 1 cut(s) 797
BstYI RGATCY 3 cut(s) 6, 273, 944
BsuRI GGCC 2 cut(s) 109, 595
BtsCI GGATG 4 cut(s) 217, 702, 770, 809
BtsI GCAGTG 1 cut(s) 472
BtsIMutI CAGTG 3 cut(s) 188, 414, 472
Cac8I GCNNGC 5 cut(s) 395, 412, 724, 866, 911
CaiI CAGNNNCTG 1 cut(s) 19
CciI TCATGA 2 cut(s) 327, 550
Cfr13I GGNCC 1 cut(s) 107
CseI GACGC 1 cut(s) 796
Csp6I GTAC 4 cut(s) 25, 65, 613, 982
CspCI CAANNNNNGTGG 2 cut(s) 937, 972
CviAII CATG 9 cut(s) 35, 169, 222, 328, 467, 551, 591, 616, 638
CviQI GTAC 4 cut(s) 25, 65, 613, 982
DdeI CTNAG 3 cut(s) 191, 782, 856
DpnI GATC 5 cut(s) 8, 275, 389, 589, 946
DpnII GATC 5 cut(s) 6, 273, 387, 587, 944
Eam1104I CTCTTC 1 cut(s) 822
EarI CTCTTC 1 cut(s) 822
Eco130I CCWWGG 1 cut(s) 713
Eco32I GATATC 1 cut(s) 847
Eco57I CTGAAG 2 cut(s) 846, 924
EcoRV GATATC 1 cut(s) 847
EcoT14I CCWWGG 1 cut(s) 713
ErhI CCWWGG 1 cut(s) 713
FaeI CATG 9 cut(s) 38, 172, 225, 331, 470, 554, 594, 619, 641
FatI CATG 9 cut(s) 34, 168, 221, 327, 466, 550, 590, 615, 637
FbaI TGATCA 1 cut(s) 387
FblI GTMKAC 1 cut(s) 990
Fnu4HI GCNGC 2 cut(s) 581, 934
FokI GGATG 4 cut(s) 224, 709, 777, 816
Fsp4HI GCNGC 2 cut(s) 581, 934
FspBI CTAG 1 cut(s) 536
GluI GCNGC 2 cut(s) 581, 934
GsuI CTGGAG 1 cut(s) 41
HaeIII GGCC 2 cut(s) 109, 595
HapII CCGG 1 cut(s) 584
HgaI GACGC 1 cut(s) 796
Hin1II CATG 9 cut(s) 38, 172, 225, 331, 470, 554, 594, 619, 641
HincII GTYRAC 2 cut(s) 46, 747
HindII GTYRAC 2 cut(s) 46, 747
HindIII AAGCTT 1 cut(s) 120
HinfI GANTC 8 cut(s) 172, 379, 435, 539, 559, 620, 751, 812
HpaII CCGG 1 cut(s) 584
HphI GGTGA 1 cut(s) 703
Hpy166II GTNNAC 4 cut(s) 46, 205, 747, 991
Hpy188I TCNGA 8 cut(s) 82, 268, 387, 463, 635, 783, 859, 1025
Hpy188III TCNNGA 8 cut(s) 20, 116, 277, 328, 551, 563, 818, 942
Hpy8I GTNNAC 4 cut(s) 46, 205, 747, 991
Hpy99I CGWCG 2 cut(s) 689, 812
HpyAV CCTTC 6 cut(s) 55, 87, 155, 289, 425, 884
HpyCH4III ACNGT 3 cut(s) 15, 335, 710
HpyF10VI GCNNNNNNNGC 3 cut(s) 681, 774, 861
HpyF3I CTNAG 3 cut(s) 191, 782, 856
Hsp92II CATG 9 cut(s) 38, 172, 225, 331, 470, 554, 594, 619, 641
KpnI GGTACC 1 cut(s) 68
Ksp22I TGATCA 1 cut(s) 387
Kzo9I GATC 5 cut(s) 6, 273, 387, 587, 944
LmnI GCTCC 2 cut(s) 373, 873
Lsp1109I GCAGC 2 cut(s) 592, 920
LweI GCATC 5 cut(s) 73, 187, 510, 755, 794
MaeI CTAG 1 cut(s) 536
MaeIII GTNAC 4 cut(s) 436, 470, 647, 884
MalI GATC 5 cut(s) 8, 275, 389, 589, 946
MboI GATC 5 cut(s) 6, 273, 387, 587, 944
MboII GAAGA 3 cut(s) 463, 539, 839
MfeI CAATTG 1 cut(s) 657
MflI RGATCY 3 cut(s) 6, 273, 944
MhlI GDGCHC 2 cut(s) 219, 857
MluCI AATT 4 cut(s) 69, 260, 285, 657
MlyI GAGTC 4 cut(s) 444, 548, 614, 745
MseI TTAA 3 cut(s) 137, 422, 479
MspI CCGG 1 cut(s) 584
MspR9I CCNGG 1 cut(s) 585
MunI CAATTG 1 cut(s) 657
Mva1269I GAATGC 1 cut(s) 777
MwoI GCNNNNNNNGC 3 cut(s) 681, 774, 861
NciI CCSGG 1 cut(s) 585
NdeII GATC 5 cut(s) 6, 273, 387, 587, 944
NlaIII CATG 9 cut(s) 38, 172, 225, 331, 470, 554, 594, 619, 641
NlaIV GGNNCC 4 cut(s) 66, 788, 869, 946
NmuCI GTSAC 3 cut(s) 436, 470, 647
PagI TCATGA 2 cut(s) 327, 550
PctI GAATGC 1 cut(s) 777
PfeI GAWTC 4 cut(s) 172, 379, 559, 812
PkrI GCNGC 2 cut(s) 582, 935
PleI GAGTC 4 cut(s) 443, 547, 614, 745
PpsI GAGTC 4 cut(s) 443, 547, 614, 745
PshAI GACNNNNGTC 1 cut(s) 645
PspN4I GGNNCC 4 cut(s) 66, 788, 869, 946
PspPI GGNCC 1 cut(s) 107
PstNI CAGNNNCTG 1 cut(s) 19
PsuI RGATCY 3 cut(s) 6, 273, 944
RsaI GTAC 4 cut(s) 26, 66, 614, 983
RsaNI GTAC 4 cut(s) 25, 65, 613, 982
SaqAI TTAA 3 cut(s) 137, 422, 479
SatI GCNGC 2 cut(s) 581, 934
Sau3AI GATC 5 cut(s) 6, 273, 387, 587, 944
Sau96I GGNCC 1 cut(s) 107
SchI GAGTC 4 cut(s) 444, 548, 614, 745
ScrFI CCNGG 1 cut(s) 585
SduI GDGCHC 2 cut(s) 219, 857
SfaNI GCATC 5 cut(s) 73, 187, 510, 755, 794
SmlI CTYRAG 2 cut(s) 608, 816
SmoI CTYRAG 2 cut(s) 608, 816
Sse9I AATT 4 cut(s) 69, 260, 285, 657
SspMI CTAG 1 cut(s) 536
StyD4I CCNGG 1 cut(s) 583
StyI CCWWGG 1 cut(s) 713
TaaI ACNGT 3 cut(s) 15, 335, 710
TaqI TCGA 4 cut(s) 293, 564, 705, 810
TasI AATT 4 cut(s) 69, 260, 285, 657
TatI WGTACW 2 cut(s) 612, 981
TfiI GAWTC 4 cut(s) 172, 379, 559, 812
Tru1I TTAA 3 cut(s) 137, 422, 479
Tru9I TTAA 3 cut(s) 137, 422, 479
TscAI CASTG 3 cut(s) 195, 421, 479
TseFI GTSAC 3 cut(s) 436, 470, 647
TseI GCWGC 2 cut(s) 580, 933
Tsp45I GTSAC 3 cut(s) 436, 470, 647
TspDTI ATGAA 7 cut(s) 51, 185, 296, 344, 539, 567, 572
TspRI CASTG 3 cut(s) 195, 421, 479
XcmI CCANNNNNNNNNTGG 1 cut(s) 797
XmiI GTMKAC 1 cut(s) 990
XspI CTAG 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.