Rh4BG412700

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0015893
Physical Location & Seq
Reverse (-)
56120684 .. 56126871
6188 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG412700.1

Sequence Viewer

Length: 720 bp
ATGGAGATCCCACAGTTTCTGGAGTACCAAGAACATGAAGCTGTTGACAACTCTGCACAGAAGGTACCAATTCTGCCTACTGATGCAATCAAAGAAAAAGAAGCAGGGCCACCTCACGAAGCTTTGTTCCTTATCTTAACTTACCTTCCTCTGTTTGAGCTTCTTGCCATGAATCAAGTTTGCACTTCACTGAGAGATGCAGTAAACAAGGATGTGCTCTCATGGTTGAACATCATCGTTGATAAGGCTTTGAGCTTGAAATTGTCTGATGAGATCTTGATGAAAATTACATCGAAGGCTAATGGTAGGTTGAGAACTTTGGCTCTCATGAACTGTGCAAAGATTACAGATAACGGGCTTCAACAGGTTGTGGAGCAGAATCCTCTGATCAGCAAGCTCTATCTACCAGCTTGCACTGGCTTAACACCCGAAGGGGTCATACGAGCTGTGAAGACATTATCTGACCATGGCCACTGCCTAAAGTCCATAATGATAAATGGCATCTACAACATAAACAAACAGCACCTTGAAACACTTGAGTCTTATCTTCATGAAATGAATCTCGACGCAAAGAAAGAGCAGCCGGGATCATGGCCTCTCCTATTACTTGAGTACATGGACTCGCCAACATTCAGACATGACAAAGGTCACACCATAATTGACCTTGAAGTTTGCCCGGAATGCGACGAGGTGAGGATGGTTTTCGACTGTCCAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

239

Amino Acids

27.0

Weight (kDa)

5.27

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 38 - 75 3.3e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01620
fragaria_vesca FvH4_4g33880
malus_domestica MD13G1030300.v1.1
prunus_persica Prupe.1G331200_v2.0.a1
pyrus_communis pycom13g01860
rosa_chinensis RchiOBHm_Chr4g0443391
rosa_laevigata RLG00000005932
rosa_multiflora Rmu_ssc0000122.1_g000014
rosa_roxburghii Rroxscaffold_5G00383950
rosa_rugosa Rorug04G0346000
rosa_samantha Rh4AG401300 Rh4BG412700 Rh4CG428400 Rh4DG408500
rosa_wichuraiana Rw4G034600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 64
AccB1I GGYRCC 1 cut(s) 64
AclWI GGATC 1 cut(s) 595
AcoI YGGCCR 1 cut(s) 469
AfaI GTAC 3 cut(s) 26, 66, 614
AgsI TTSAA 5 cut(s) 229, 259, 362, 530, 668
AluBI AGCT 7 cut(s) 41, 122, 160, 255, 397, 410, 446
AluI AGCT 7 cut(s) 41, 122, 160, 255, 397, 410, 446
Alw21I GWGCWC 1 cut(s) 219
AlwI GGATC 1 cut(s) 595
AlwNI CAGNNNCTG 1 cut(s) 19
AoxI GGCC 3 cut(s) 107, 469, 593
ApeKI GCWGC 1 cut(s) 580
Asp718I GGTACC 1 cut(s) 64
AspS9I GGNCC 1 cut(s) 107
AsuC2I CCSGG 2 cut(s) 585, 677
AsuHPI GGTGA 1 cut(s) 703
BalI TGGCCA 1 cut(s) 471
BanI GGYRCC 1 cut(s) 64
BarI GAAGNNNNNNTAC 2 cut(s) 423, 455
BbsI GAAGAC 1 cut(s) 458
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 1 cut(s) 592
BccI CCATC 1 cut(s) 691
BclI TGATCA 1 cut(s) 387
BcnI CCSGG 2 cut(s) 585, 677
BglII AGATCT 1 cut(s) 273
BisI GCNGC 1 cut(s) 581
BlsI GCNGC 1 cut(s) 582
Bme1390I CCNGG 2 cut(s) 585, 677
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 1 cut(s) 66
BmrFI CCNGG 2 cut(s) 585, 677
BmsI GCATC 3 cut(s) 73, 187, 510
BoxI GACNNNNGTC 1 cut(s) 645
BpiI GAAGAC 1 cut(s) 458
BpmI CTGGAG 1 cut(s) 41
BpuEI CTTGAG 2 cut(s) 557, 629
BpuMI CCSGG 2 cut(s) 585, 677
BsaJI CCNNGG 2 cut(s) 466, 713
Bse1I ACTGG 1 cut(s) 421
BseDI CCNNGG 2 cut(s) 466, 713
BseGI GGATG 2 cut(s) 217, 702
BseMII CTCAG 1 cut(s) 182
BseNI ACTGG 1 cut(s) 421
BseXI GCAGC 1 cut(s) 592
BsgI GTGCAG 1 cut(s) 39
BshFI GGCC 3 cut(s) 109, 471, 595
BshNI GGYRCC 1 cut(s) 64
BsiHKAI GWGCWC 1 cut(s) 219
BsiSI CCGG 2 cut(s) 584, 677
BsmI GAATGC 1 cut(s) 686
BsnI GGCC 3 cut(s) 109, 471, 595
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 4 cut(s) 6, 273, 387, 587
Bsp19I CCATGG 1 cut(s) 466
BspANI GGCC 3 cut(s) 109, 471, 595
BspCNI CTCAG 1 cut(s) 183
BspHI TCATGA 2 cut(s) 327, 550
BspLI GGNNCC 1 cut(s) 66
BspPI GGATC 1 cut(s) 595
BspT107I GGYRCC 1 cut(s) 64
BsrI ACTGG 1 cut(s) 421
BssECI CCNNGG 2 cut(s) 466, 713
BssMI GATC 4 cut(s) 6, 273, 387, 587
BssT1I CCWWGG 2 cut(s) 466, 713
Bst4CI ACNGT 3 cut(s) 15, 335, 710
BstC8I GCNNGC 2 cut(s) 395, 412
BstDEI CTNAG 1 cut(s) 191
BstDSI CCRYGG 1 cut(s) 466
BstF5I GGATG 2 cut(s) 217, 702
BstKTI GATC 4 cut(s) 9, 276, 390, 590
BstMBI GATC 4 cut(s) 6, 273, 387, 587
BstMWI GCNNNNNNNGC 1 cut(s) 681
BstPAI GACNNNNGTC 1 cut(s) 645
BstSCI CCNGG 2 cut(s) 583, 675
BstV1I GCAGC 1 cut(s) 592
BstV2I GAAGAC 1 cut(s) 458
BstX2I RGATCY 2 cut(s) 6, 273
BstYI RGATCY 2 cut(s) 6, 273
BsuRI GGCC 3 cut(s) 109, 471, 595
BtgI CCRYGG 1 cut(s) 466
BtsCI GGATG 2 cut(s) 217, 702
BtsI GCAGTG 1 cut(s) 472
BtsIMutI CAGTG 3 cut(s) 188, 414, 472
Cac8I GCNNGC 2 cut(s) 395, 412
CaiI CAGNNNCTG 1 cut(s) 19
CciI TCATGA 2 cut(s) 327, 550
Cfr13I GGNCC 1 cut(s) 107
CseI GACGC 1 cut(s) 575
Csp6I GTAC 3 cut(s) 25, 65, 613
CviAII CATG 9 cut(s) 35, 169, 222, 328, 467, 551, 591, 616, 638
CviQI GTAC 3 cut(s) 25, 65, 613
DdeI CTNAG 1 cut(s) 191
DpnI GATC 4 cut(s) 8, 275, 389, 589
DpnII GATC 4 cut(s) 6, 273, 387, 587
EaeI YGGCCR 1 cut(s) 469
Eco130I CCWWGG 2 cut(s) 466, 713
EcoT14I CCWWGG 2 cut(s) 466, 713
ErhI CCWWGG 2 cut(s) 466, 713
FaeI CATG 9 cut(s) 38, 172, 225, 331, 470, 554, 594, 619, 641
FatI CATG 9 cut(s) 34, 168, 221, 327, 466, 550, 590, 615, 637
FbaI TGATCA 1 cut(s) 387
Fnu4HI GCNGC 1 cut(s) 581
FokI GGATG 2 cut(s) 224, 709
Fsp4HI GCNGC 1 cut(s) 581
GluI GCNGC 1 cut(s) 581
GsuI CTGGAG 1 cut(s) 41
HaeIII GGCC 3 cut(s) 109, 471, 595
HapII CCGG 2 cut(s) 584, 677
HgaI GACGC 1 cut(s) 575
Hin1II CATG 9 cut(s) 38, 172, 225, 331, 470, 554, 594, 619, 641
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HindIII AAGCTT 1 cut(s) 120
HinfI GANTC 5 cut(s) 172, 379, 539, 559, 620
HpaII CCGG 2 cut(s) 584, 677
HphI GGTGA 1 cut(s) 703
Hpy166II GTNNAC 2 cut(s) 46, 205
Hpy188I TCNGA 4 cut(s) 268, 387, 463, 635
Hpy188III TCNNGA 6 cut(s) 20, 116, 277, 328, 551, 563
Hpy8I GTNNAC 2 cut(s) 46, 205
Hpy99I CGWCG 2 cut(s) 569, 689
HpyAV CCTTC 4 cut(s) 55, 155, 289, 425
HpyCH4III ACNGT 3 cut(s) 15, 335, 710
HpyCH4V TGCA 6 cut(s) 56, 86, 183, 200, 338, 414
HpyF10VI GCNNNNNNNGC 1 cut(s) 681
HpyF3I CTNAG 1 cut(s) 191
Hsp92II CATG 9 cut(s) 38, 172, 225, 331, 470, 554, 594, 619, 641
KpnI GGTACC 1 cut(s) 68
Ksp22I TGATCA 1 cut(s) 387
Kzo9I GATC 4 cut(s) 6, 273, 387, 587
LmnI GCTCC 1 cut(s) 373
LpnPI CCDG 7 cut(s) 5, 90, 350, 402, 420, 597, 690
Lsp1109I GCAGC 1 cut(s) 592
LweI GCATC 3 cut(s) 73, 187, 510
MaeIII GTNAC 1 cut(s) 647
MalI GATC 4 cut(s) 8, 275, 389, 589
MboI GATC 4 cut(s) 6, 273, 387, 587
MboII GAAGA 2 cut(s) 463, 539
MflI RGATCY 2 cut(s) 6, 273
MhlI GDGCHC 1 cut(s) 219
MlsI TGGCCA 1 cut(s) 471
MluCI AATT 4 cut(s) 69, 260, 285, 657
MluNI TGGCCA 1 cut(s) 471
MlyI GAGTC 2 cut(s) 548, 614
MnlI CCTC 6 cut(s) 123, 159, 393, 606, 682, 687
Mox20I TGGCCA 1 cut(s) 471
MscI TGGCCA 1 cut(s) 471
MseI TTAA 2 cut(s) 137, 422
Msp20I TGGCCA 1 cut(s) 471
MspI CCGG 2 cut(s) 584, 677
MspR9I CCNGG 2 cut(s) 585, 677
Mva1269I GAATGC 1 cut(s) 686
MwoI GCNNNNNNNGC 1 cut(s) 681
NciI CCSGG 2 cut(s) 585, 677
NcoI CCATGG 1 cut(s) 466
NdeII GATC 4 cut(s) 6, 273, 387, 587
NlaIII CATG 9 cut(s) 38, 172, 225, 331, 470, 554, 594, 619, 641
NlaIV GGNNCC 1 cut(s) 66
NmuCI GTSAC 1 cut(s) 647
PagI TCATGA 2 cut(s) 327, 550
PctI GAATGC 1 cut(s) 686
PfeI GAWTC 3 cut(s) 172, 379, 559
PkrI GCNGC 1 cut(s) 582
PleI GAGTC 2 cut(s) 547, 614
PpsI GAGTC 2 cut(s) 547, 614
PshAI GACNNNNGTC 1 cut(s) 645
PspN4I GGNNCC 1 cut(s) 66
PspPI GGNCC 1 cut(s) 107
PstNI CAGNNNCTG 1 cut(s) 19
PsuI RGATCY 2 cut(s) 6, 273
RsaI GTAC 3 cut(s) 26, 66, 614
RsaNI GTAC 3 cut(s) 25, 65, 613
SaqAI TTAA 2 cut(s) 137, 422
SatI GCNGC 1 cut(s) 581
Sau3AI GATC 4 cut(s) 6, 273, 387, 587
Sau96I GGNCC 1 cut(s) 107
SchI GAGTC 2 cut(s) 548, 614
ScrFI CCNGG 2 cut(s) 585, 677
SduI GDGCHC 1 cut(s) 219
SfaNI GCATC 3 cut(s) 73, 187, 510
SmlI CTYRAG 2 cut(s) 536, 608
SmoI CTYRAG 2 cut(s) 536, 608
Sse9I AATT 4 cut(s) 69, 260, 285, 657
StyD4I CCNGG 2 cut(s) 583, 675
StyI CCWWGG 2 cut(s) 466, 713
TaaI ACNGT 3 cut(s) 15, 335, 710
TaqI TCGA 3 cut(s) 293, 564, 705
TasI AATT 4 cut(s) 69, 260, 285, 657
TatI WGTACW 1 cut(s) 612
TfiI GAWTC 3 cut(s) 172, 379, 559
Tru1I TTAA 2 cut(s) 137, 422
Tru9I TTAA 2 cut(s) 137, 422
TscAI CASTG 3 cut(s) 195, 421, 479
TseFI GTSAC 1 cut(s) 647
TseI GCWGC 1 cut(s) 580
Tsp45I GTSAC 1 cut(s) 647
TspDTI ATGAA 7 cut(s) 51, 185, 296, 344, 539, 567, 572
TspRI CASTG 3 cut(s) 195, 421, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.