Prupe.1G331200_v2.0.a1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015893
Physical Location & Seq
Forward (+)
31385955 .. 31390015
4061 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G331200.1

Sequence Viewer

Length: 1377 bp
ATGGAGGGAGCAGAGTTGGAGCTAGAGAGGCGAAGCAAGTTCCTCAGCAGTTTAATACAGAAGAAGAAGTCTGTAGAGCAACAAGACCACCATGACCTCCTCAATGTCCGAGTTAGGGCCTCTGACATGCCCACCCCTTTGCAAAACCGCGCCTTTCGCTCTGCGAGGGACCACCTGGACTCCATGCCGGGGAAACTCGACAGCAAACGACTCGCTCTTGCCCTTAAGAAGGAATTTGACTCGTCATGTGGTCCAGCTTGGCACTGCATTGTGGGAACTAGCTTTGGTTCGTATGTCACACATTCCACTGGAGGGTTCTTGTATTTTTCGATCGACAAGCCCAGTACAAACTGTGAAATCTCCTTTCGATTCATTTCTCGAAGAAAGAAAAAAAAACTGCTGCGACAGCTGAAACCCGAAACCATGGAGATTTCACAGTTTATGGGGCAGCAAGAACATGAAGCTATTGAAAACTCCCAGGACAAAAAAGCAGGGCCACCACACATGGCTTTGTCCCTTATTTCAGCTTACCTTCCTCTGTTCGAGCTTCTTGCCATGAGCGGAGTTTGCACGTCACTGAGAGACGCAGTAAACAAGGATGTATTGTCATGGCTAGATATCGTGGTCAAATCGCCATTGAACTTGAGGCTGTCCGATGGGATTTTGATGAAAATCACATCCAAGGCGAATGGCAGGTTGACAACGTTGGCTCTAATGGATTGTGCGAAGATAACAGATGATGGGCTTCAAAGGGTTGTAGAGCGAAATCCTCTTATCAACAAGCTCTACCTACCGGGATGCACTGGCTTAACACCTGAGGGGGTCATAGGAGCTGTGAAGACATTGTCTGAACATCATCACGGTTTAAAGAGCCTAATGATCAATGGCATCTACAACATAAACAAAGAACACCTCGAAACACTTCGGCCTTATCTTGAGAAGAACCTGTCACAGCAAGAGCAGTCAGGATCATGGCCTCTCCTATTCCACGAGCACAGGGACGTGCCAACATTCAGACATGACAAAGGTTACGCTACAATCGATGTCGAAGTTTGCCCGAAATGCGACGAGGTTAGGATGGTTTTCGACTGTCCAAGAAGGACTTGCAAGAGAAAGATAGGAAGGTCAATGAGCGATTGCAGGGGATGCAACTTTTGCATTCCAAGGTGCCAAGAATGCGGTGGATGCGTGGACGACTCTGAAGAAGTAGAAGAGGCTGTGTGTGCAGATATCTTGTGTTCAGATTGCTGGCTTCAGCTCCCCAAATGTGACTTCTGCAACAAGCCATATTGTAAGCAACACGCCCACAACGGGTCCTGTCCTCCCGGGTCAACAGGTTTCGTCTGTGATGTTTGTTGGGCAAATTTTAATATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

459

Amino Acids

51.53

Weight (kDa)

8.09

Isoelectric Point (pI)

51.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01620
fragaria_vesca FvH4_4g33880
malus_domestica MD13G1030300.v1.1
prunus_persica Prupe.1G331200_v2.0.a1
pyrus_communis pycom13g01860
rosa_chinensis RchiOBHm_Chr4g0443391
rosa_laevigata RLG00000005932
rosa_multiflora Rmu_ssc0000122.1_g000014
rosa_roxburghii Rroxscaffold_5G00383950
rosa_rugosa Rorug04G0346000
rosa_samantha Rh4AG401300 Rh4BG412700 Rh4CG428400 Rh4DG408500
rosa_wichuraiana Rw4G034600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 684
AccB1I GGYRCC 1 cut(s) 1167
AccBSI CCGCTC 1 cut(s) 561
AccII CGCG 1 cut(s) 150
AciI CCGC 3 cut(s) 148, 561, 1179
AclI AACGTT 1 cut(s) 704
AclWI GGATC 1 cut(s) 976
AcsI RAATTY 2 cut(s) 233, 1363
AcuI CTGAAG 2 cut(s) 1221, 1238
AfaI GTAC 1 cut(s) 346
AfiI CCNNNNNNNGG 5 cut(s) 115, 189, 229, 312, 1311
AflII CTTAAG 1 cut(s) 224
AgsI TTSAA 3 cut(s) 470, 640, 749
AjiI CACGTC 2 cut(s) 573, 1003
AjnI CCWGG 2 cut(s) 174, 477
AjuI GAANNNNNNNTTGG 2 cut(s) 1256, 1288
Alw21I GWGCWC 1 cut(s) 996
Alw26I GTCTC 1 cut(s) 576
AlwI GGATC 1 cut(s) 976
Ama87I CYCGRG 1 cut(s) 1325
AoxI GGCC 4 cut(s) 117, 494, 926, 974
ApeKI GCWGC 2 cut(s) 400, 448
ApoI RAATTY 2 cut(s) 233, 1363
Asp700I GAANNNNTTC 1 cut(s) 921
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 5 cut(s) 117, 169, 251, 494, 1314
AsuC2I CCSGG 4 cut(s) 189, 795, 1326, 1327
AvaI CYCGRG 1 cut(s) 1325
AvaII GGWCC 3 cut(s) 169, 251, 1314
AxyI CCTNAGG 1 cut(s) 816
BanI GGYRCC 1 cut(s) 1167
BauI CACGAG 1 cut(s) 989
BbsI GAAGAC 1 cut(s) 845
Bbv12I GWGCWC 1 cut(s) 996
BbvCI CCTCAGC 1 cut(s) 44
BbvI GCAGC 2 cut(s) 387, 460
BccI CCATC 3 cut(s) 650, 734, 1072
BcgI CGANNNNNNTGC 4 cut(s) 193, 227, 533, 567
BciT130I CCWGG 2 cut(s) 176, 479
BclI TGATCA 1 cut(s) 879
BcnI CCSGG 4 cut(s) 189, 795, 1326, 1327
BcoDI GTCTC 1 cut(s) 576
BfaI CTAG 3 cut(s) 23, 279, 614
BfmI CTRYAG 1 cut(s) 72
BfrI CTTAAG 1 cut(s) 224
BfuAI ACCTGC 1 cut(s) 684
BisI GCNGC 2 cut(s) 401, 449
BlsI GCNGC 2 cut(s) 402, 450
Bme1390I CCNGG 6 cut(s) 176, 189, 479, 795, 1326, 1327
Bme18I GGWCC 3 cut(s) 169, 251, 1314
BmeT110I CYCGRG 1 cut(s) 1325
BmgBI CACGTC 2 cut(s) 573, 1003
BmgT120I GGNCC 5 cut(s) 117, 169, 251, 494, 1314
BmiI GGNNCC 3 cut(s) 170, 1169, 1315
BmrFI CCNGG 6 cut(s) 176, 189, 479, 795, 1326, 1327
BmrI ACTGGG 1 cut(s) 336
BmsI GCATC 4 cut(s) 788, 897, 1136, 1175
BmuI ACTGGG 1 cut(s) 336
BpiI GAAGAC 1 cut(s) 845
BpmI CTGGAG 1 cut(s) 330
Bpu10I CCTNAGC 1 cut(s) 44
BpuEI CTTGAG 2 cut(s) 664, 956
BpuMI CCSGG 4 cut(s) 189, 795, 1326, 1327
Bsa29I ATCGAT 1 cut(s) 1041
BsaBI GATNNNNATC 1 cut(s) 671
BsaJI CCNNGG 6 cut(s) 188, 423, 477, 681, 1163, 1325
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
Bsc4I CCNNNNNNNGG 5 cut(s) 115, 189, 229, 312, 1311
Bse1I ACTGG 3 cut(s) 313, 342, 808
Bse21I CCTNAGG 1 cut(s) 816
Bse8I GATNNNNATC 1 cut(s) 671
BseBI CCWGG 2 cut(s) 176, 479
BseCI ATCGAT 1 cut(s) 1041
BseDI CCNNGG 6 cut(s) 188, 423, 477, 681, 1163, 1325
BseGI GGATG 6 cut(s) 604, 677, 803, 1083, 1151, 1190
BseJI GATNNNNATC 1 cut(s) 671
BseLI CCNNNNNNNGG 5 cut(s) 115, 189, 229, 312, 1311
BseMII CTCAG 3 cut(s) 58, 569, 807
BseNI ACTGG 3 cut(s) 313, 342, 808
BseRI GAGGAG 1 cut(s) 89
BseXI GCAGC 2 cut(s) 387, 460
BsgI GTGCAG 1 cut(s) 1245
Bsh1236I CGCG 1 cut(s) 150
Bsh1285I CGRYCG 1 cut(s) 333
BshFI GGCC 4 cut(s) 119, 496, 928, 976
BshNI GGYRCC 1 cut(s) 1167
BshVI ATCGAT 1 cut(s) 1041
BsiEI CGRYCG 1 cut(s) 333
BsiHKAI GWGCWC 1 cut(s) 996
BsiHKCI CYCGRG 1 cut(s) 1325
BsiSI CCGG 3 cut(s) 188, 794, 1326
BslFI GGGAC 3 cut(s) 182, 499, 1013
BslI CCNNNNNNNGG 5 cut(s) 115, 189, 229, 312, 1311
BsmAI GTCTC 1 cut(s) 576
BsmBI CGTCTC 1 cut(s) 576
BsmFI GGGAC 3 cut(s) 182, 499, 1013
BsmI GAATGC 2 cut(s) 1158, 1181
BsnI GGCC 4 cut(s) 119, 496, 928, 976
BsoBI CYCGRG 1 cut(s) 1325
Bsp1286I GDGCHC 1 cut(s) 996
Bsp143I GATC 3 cut(s) 330, 879, 968
Bsp19I CCATGG 1 cut(s) 423
BspACI CCGC 3 cut(s) 148, 561, 1179
BspANI GGCC 4 cut(s) 119, 496, 928, 976
BspCNI CTCAG 3 cut(s) 57, 570, 808
BspDI ATCGAT 1 cut(s) 1041
BspFNI CGCG 1 cut(s) 150
BspLI GGNNCC 3 cut(s) 170, 1169, 1315
BspMI ACCTGC 1 cut(s) 684
BspPI GGATC 1 cut(s) 976
BspT107I GGYRCC 1 cut(s) 1167
BspTI CTTAAG 1 cut(s) 224
BsrBI CCGCTC 1 cut(s) 561
BsrI ACTGG 3 cut(s) 313, 342, 808
BssECI CCNNGG 6 cut(s) 188, 423, 477, 681, 1163, 1325
BssMI GATC 3 cut(s) 330, 879, 968
BssSI CACGAG 1 cut(s) 989
BssT1I CCWWGG 3 cut(s) 423, 681, 1163
Bst2BI CACGAG 1 cut(s) 989
Bst2UI CCWGG 2 cut(s) 176, 479
Bst4CI ACNGT 4 cut(s) 353, 438, 863, 1091
Bst6I CTCTTC 1 cut(s) 1206
BstAFI CTTAAG 1 cut(s) 224
BstAPI GCANNNNNTGC 2 cut(s) 1146, 1155
BstC8I GCNNGC 1 cut(s) 1250
BstDEI CTNAG 3 cut(s) 44, 578, 816
BstDSI CCRYGG 1 cut(s) 423
BstENI CCTNNNNNAGG 1 cut(s) 227
BstF5I GGATG 6 cut(s) 604, 677, 803, 1083, 1151, 1190
BstFNI CGCG 1 cut(s) 150
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 3 cut(s) 333, 882, 971
BstMAI GTCTC 1 cut(s) 576
BstMBI GATC 3 cut(s) 330, 879, 968
BstMCI CGRYCG 1 cut(s) 333
BstNI CCWGG 2 cut(s) 176, 479
BstNSI RCATGY 1 cut(s) 130
BstSCI CCNGG 6 cut(s) 174, 187, 477, 793, 1324, 1325
BstSFI CTRYAG 1 cut(s) 72
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 2 cut(s) 387, 460
BstV2I GAAGAC 1 cut(s) 845
Bsu15I ATCGAT 1 cut(s) 1041
Bsu36I CCTNAGG 1 cut(s) 816
BsuRI GGCC 4 cut(s) 119, 496, 928, 976
BsuTUI ATCGAT 1 cut(s) 1041
BtgI CCRYGG 1 cut(s) 423
BtrI CACGTC 2 cut(s) 573, 1003
BtsCI GGATG 6 cut(s) 604, 677, 803, 1083, 1151, 1190
BtsI GCAGTG 1 cut(s) 262
BtsIMutI CAGTG 4 cut(s) 262, 306, 575, 801
BveI ACCTGC 1 cut(s) 684
Cac8I GCNNGC 1 cut(s) 1250
CfoI GCGC 1 cut(s) 152
Cfr13I GGNCC 5 cut(s) 117, 169, 251, 494, 1314
Cfr9I CCCGGG 1 cut(s) 1325
ClaI ATCGAT 1 cut(s) 1041
CseI GACGC 1 cut(s) 593
Csp6I GTAC 1 cut(s) 345
CviQI GTAC 1 cut(s) 345
DdeI CTNAG 3 cut(s) 44, 578, 816
DpnI GATC 3 cut(s) 332, 881, 970
DpnII GATC 3 cut(s) 330, 879, 968
DraI TTTAAA 1 cut(s) 867
Eam1104I CTCTTC 1 cut(s) 1206
EarI CTCTTC 1 cut(s) 1206
Eco130I CCWWGG 3 cut(s) 423, 681, 1163
Eco32I GATATC 2 cut(s) 619, 1231
Eco47I GGWCC 3 cut(s) 169, 251, 1314
Eco57I CTGAAG 2 cut(s) 1221, 1238
Eco81I CCTNAGG 1 cut(s) 816
Eco88I CYCGRG 1 cut(s) 1325
EcoNI CCTNNNNNAGG 1 cut(s) 227
EcoO109I RGGNCCY 2 cut(s) 117, 1314
EcoRII CCWGG 2 cut(s) 174, 477
EcoRV GATATC 2 cut(s) 619, 1231
EcoT14I CCWWGG 3 cut(s) 423, 681, 1163
ErhI CCWWGG 3 cut(s) 423, 681, 1163
Esp3I CGTCTC 1 cut(s) 576
FalI AAGNNNNNCTT 2 cut(s) 1087, 1119
FaqI GGGAC 3 cut(s) 182, 499, 1013
FbaI TGATCA 1 cut(s) 879
Fnu4HI GCNGC 2 cut(s) 401, 449
FokI GGATG 6 cut(s) 611, 664, 810, 1090, 1158, 1197
Fsp4HI GCNGC 2 cut(s) 401, 449
FspBI CTAG 3 cut(s) 23, 279, 614
GlaI GCGC 1 cut(s) 151
GluI GCNGC 2 cut(s) 401, 449
GsuI CTGGAG 1 cut(s) 330
HaeIII GGCC 4 cut(s) 119, 496, 928, 976
HapII CCGG 3 cut(s) 188, 794, 1326
HgaI GACGC 1 cut(s) 593
HhaI GCGC 1 cut(s) 152
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HincII GTYRAC 2 cut(s) 699, 1332
HindII GTYRAC 2 cut(s) 699, 1332
HinfI GANTC 5 cut(s) 179, 210, 239, 369, 1196
HpaII CCGG 3 cut(s) 188, 794, 1326
Hpy166II GTNNAC 4 cut(s) 592, 699, 1192, 1332
Hpy188I TCNGA 7 cut(s) 110, 124, 655, 850, 1016, 1201, 1243
Hpy188III TCNNGA 3 cut(s) 378, 935, 966
Hpy8I GTNNAC 4 cut(s) 592, 699, 1192, 1332
Hpy99I CGWCG 1 cut(s) 1070
HpyAV CCTTC 4 cut(s) 223, 542, 1092, 1116
HpyCH4III ACNGT 4 cut(s) 353, 438, 863, 1091
HpyCH4IV ACGT 3 cut(s) 572, 704, 1002
HpyF3I CTNAG 3 cut(s) 44, 578, 816
HpySE526I ACGT 3 cut(s) 572, 704, 1002
HspAI GCGC 1 cut(s) 150
Ksp22I TGATCA 1 cut(s) 879
Kzo9I GATC 3 cut(s) 330, 879, 968
LmnI GCTCC 4 cut(s) 8, 19, 830, 1263
Lsp1109I GCAGC 2 cut(s) 387, 460
LweI GCATC 4 cut(s) 788, 897, 1136, 1175
MaeI CTAG 3 cut(s) 23, 279, 614
MaeII ACGT 3 cut(s) 572, 704, 1002
MaeIII GTNAC 5 cut(s) 295, 573, 948, 1028, 1268
MalI GATC 3 cut(s) 332, 881, 970
MbiI CCGCTC 1 cut(s) 561
MboI GATC 3 cut(s) 330, 879, 968
MboII GAAGA 8 cut(s) 73, 76, 393, 739, 850, 952, 1214, 1223
MhlI GDGCHC 1 cut(s) 996
MluCI AATT 2 cut(s) 233, 1363
MlyI GAGTC 4 cut(s) 173, 204, 233, 1190
MroXI GAANNNNTTC 1 cut(s) 921
MseI TTAA 5 cut(s) 53, 225, 809, 866, 1368
MspA1I CMGCKG 1 cut(s) 409
MspCI CTTAAG 1 cut(s) 224
MspI CCGG 3 cut(s) 188, 794, 1326
MspR9I CCNGG 6 cut(s) 176, 189, 479, 795, 1326, 1327
Mva1269I GAATGC 2 cut(s) 1158, 1181
MvaI CCWGG 2 cut(s) 176, 479
MvnI CGCG 1 cut(s) 150
NciI CCSGG 4 cut(s) 189, 795, 1326, 1327
NcoI CCATGG 1 cut(s) 423
NdeII GATC 3 cut(s) 330, 879, 968
NlaIV GGNNCC 3 cut(s) 170, 1169, 1315
NmuCI GTSAC 4 cut(s) 295, 573, 948, 1268
NspI RCATGY 1 cut(s) 130
PcsI WCGNNNNNNNCGW 1 cut(s) 1038
PctI GAATGC 2 cut(s) 1158, 1181
PdmI GAANNNNTTC 1 cut(s) 921
PfeI GAWTC 1 cut(s) 369
PflFI GACNNNGTC 1 cut(s) 844
PkrI GCNGC 2 cut(s) 402, 450
Ple19I CGATCG 1 cut(s) 333
PleI GAGTC 4 cut(s) 173, 204, 233, 1190
PpsI GAGTC 4 cut(s) 173, 204, 233, 1190
PpuMI RGGWCCY 1 cut(s) 1314
Psp1406I AACGTT 1 cut(s) 704
Psp5II RGGWCCY 1 cut(s) 1314
Psp6I CCWGG 2 cut(s) 174, 477
PspGI CCWGG 2 cut(s) 174, 477
PspN4I GGNNCC 3 cut(s) 170, 1169, 1315
PspPI GGNCC 5 cut(s) 117, 169, 251, 494, 1314
PspPPI RGGWCCY 1 cut(s) 1314
PsyI GACNNNGTC 1 cut(s) 844
PvuI CGATCG 1 cut(s) 333
PvuII CAGCTG 1 cut(s) 409
RsaI GTAC 1 cut(s) 346
RsaNI GTAC 1 cut(s) 345
SaqAI TTAA 5 cut(s) 53, 225, 809, 866, 1368
SatI GCNGC 2 cut(s) 401, 449
Sau3AI GATC 3 cut(s) 330, 879, 968
Sau96I GGNCC 5 cut(s) 117, 169, 251, 494, 1314
SchI GAGTC 4 cut(s) 173, 204, 233, 1190
ScrFI CCNGG 6 cut(s) 176, 189, 479, 795, 1326, 1327
SduI GDGCHC 1 cut(s) 996
SfaNI GCATC 4 cut(s) 788, 897, 1136, 1175
SfcI CTRYAG 1 cut(s) 72
SinI GGWCC 3 cut(s) 169, 251, 1314
SmaI CCCGGG 1 cut(s) 1327
SmlI CTYRAG 3 cut(s) 224, 643, 935
SmoI CTYRAG 3 cut(s) 224, 643, 935
Sse9I AATT 2 cut(s) 233, 1363
SsiI CCGC 3 cut(s) 148, 561, 1179
SspI AATATT 1 cut(s) 1372
SspMI CTAG 3 cut(s) 23, 279, 614
StyD4I CCNGG 6 cut(s) 174, 187, 477, 793, 1324, 1325
StyI CCWWGG 3 cut(s) 423, 681, 1163
TaaI ACNGT 4 cut(s) 353, 438, 863, 1091
TaiI ACGT 3 cut(s) 575, 707, 1005
TasI AATT 2 cut(s) 233, 1363
TatI WGTACW 1 cut(s) 344
TfiI GAWTC 1 cut(s) 369
Tru1I TTAA 5 cut(s) 53, 225, 809, 866, 1368
Tru9I TTAA 5 cut(s) 53, 225, 809, 866, 1368
TscAI CASTG 4 cut(s) 269, 313, 582, 808
TseFI GTSAC 4 cut(s) 295, 573, 948, 1268
TseI GCWGC 2 cut(s) 400, 448
Tsp45I GTSAC 4 cut(s) 295, 573, 948, 1268
TspDTI ATGAA 3 cut(s) 361, 474, 683
TspMI CCCGGG 1 cut(s) 1325
TspRI CASTG 4 cut(s) 269, 313, 582, 808
Tth111I GACNNNGTC 1 cut(s) 844
Vha464I CTTAAG 1 cut(s) 224
VpaK11BI GGWCC 3 cut(s) 169, 251, 1314
XagI CCTNNNNNAGG 1 cut(s) 227
XapI RAATTY 2 cut(s) 233, 1363
XceI RCATGY 1 cut(s) 130
XcmI CCANNNNNNNNNTGG 1 cut(s) 1178
XmaI CCCGGG 1 cut(s) 1325
XmnI GAANNNNTTC 1 cut(s) 921
XspI CTAG 3 cut(s) 23, 279, 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.