MD13G1030300.v1.1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0015893
Physical Location & Seq
Reverse (-)
2182352 .. 2183622
1271 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1030300.v1.1.491

Sequence Viewer

Length: 981 bp
ATGGAGATTTCAGAGTCTACGGTGGAACACCAAGAACATGAAGCTACTGACAGTTCGGGAGATGAACAAGCAGGGCCACCGCACGAGGCGTTGTTCCTTGTTTCAGCTTACCTTCCTCTGTTCGAGCTTCTTGCTGTTAGCGGAGTTTGTAGGACACTGAGAGATGCAGTAAACACAGATGTCTTACCATGGCTAAAAATCATCGTCAAAGCGCCGTTGAACTTGAGGCTTTCCGATGAGGTTCTGATGAAAATCACATCCAAGGCTAATGGTAGGTTGAGATCTCTGGCTTTGATGAACTGTGCCAATATTACAGATGAGGGGCTTCAAGGGGTCGTTGAGCAGAATCCTCTTATCAACAAGCTCTACGTACCGGGATGCACCGGTTTAACACCCGACGGAGTCATTCGAGCTGCCAAAACATTATCCGAAAATCATCACGGCTTAAAGAGCGTCATGATATACGGCATCTACAACATGAACAAACAATACCTCGAAACGCTTGAGTCGTATCTCCAGATAAACCGGTCACAGCAAAAGCAGACAGGAGGATCACGGCCTCTTCTGTTTCACGAGTACAAGGACTGCCCAACCTCCAGACACGACAACGGTCACGCTGCAATCGACGTCCAAGTTTGCCCAAAATGCGACGAGGTTAGGATGGTTTTCGACTGTCCAAGGAGGACGTGCAGGACAAAGATAGACAGGCCAATGACTGATTGCAGAGGATGCAACTTTTGCATTCCGAGGTGCCAAGAGTGCGGCGGGTGCATCGACAATTGTGAAGAAATGGAAGAGGCTGTTTGTGCAGACATCTTGTGTTCGGATTGCTGGCTGCAACTTCCCAAATGTGACTTCTGCAACAAGCCATACTGTAAGCAACACGCTGGCAACGGATACCGTCCTCCTGGTTCCACCGGGTTCGTTTGTGATGTTTGTTATGCAAAGTTCATTGTAGATTTGCACAGCGTTGTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

327

Amino Acids

36.34

Weight (kDa)

5.61

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01620
fragaria_vesca FvH4_4g33880
malus_domestica MD13G1030300.v1.1
prunus_persica Prupe.1G331200_v2.0.a1
pyrus_communis pycom13g01860
rosa_chinensis RchiOBHm_Chr4g0443391
rosa_laevigata RLG00000005932
rosa_multiflora Rmu_ssc0000122.1_g000014
rosa_roxburghii Rroxscaffold_5G00383950
rosa_rugosa Rorug04G0346000
rosa_samantha Rh4AG401300 Rh4BG412700 Rh4CG428400 Rh4DG408500
rosa_wichuraiana Rw4G034600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 630
AccB1I GGYRCC 1 cut(s) 750
AccI GTMKAC 1 cut(s) 17
AciI CCGC 4 cut(s) 80, 141, 762, 765
AclWI GGATC 1 cut(s) 559
AcyI GRCGYC 1 cut(s) 627
AfaI GTAC 2 cut(s) 372, 578
AgeI ACCGGT 2 cut(s) 383, 525
AgsI TTSAA 3 cut(s) 220, 329, 977
AjiI CACGTC 1 cut(s) 687
AjnI CCWGG 1 cut(s) 907
AjuI GAANNNNNNNTTGG 2 cut(s) 839, 871
AluBI AGCT 5 cut(s) 44, 107, 127, 364, 413
AluI AGCT 5 cut(s) 44, 107, 127, 364, 413
AlwI GGATC 1 cut(s) 559
AoxI GGCC 3 cut(s) 74, 557, 707
ApeKI GCWGC 3 cut(s) 413, 617, 835
AsiGI ACCGGT 2 cut(s) 383, 525
AspLEI GCGC 1 cut(s) 214
AspS9I GGNCC 1 cut(s) 74
AsuC2I CCSGG 2 cut(s) 375, 919
BanI GGYRCC 1 cut(s) 750
BauI CACGAG 2 cut(s) 83, 572
BbvI GCAGC 3 cut(s) 400, 604, 822
BccI CCATC 1 cut(s) 655
BceAI ACGGC 4 cut(s) 199, 457, 481, 572
BcgI CGANNNNNNTGC 2 cut(s) 113, 147
BciT130I CCWGG 1 cut(s) 909
BciVI GTATCC 1 cut(s) 890
BcnI CCSGG 2 cut(s) 375, 919
BfoI RGCGCY 1 cut(s) 215
BfuI GTATCC 1 cut(s) 890
BglII AGATCT 1 cut(s) 281
BisI GCNGC 4 cut(s) 414, 618, 763, 836
BlsI GCNGC 4 cut(s) 415, 619, 764, 837
Bme1390I CCNGG 3 cut(s) 375, 909, 919
BmgBI CACGTC 1 cut(s) 687
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 2 cut(s) 752, 913
BmrFI CCNGG 3 cut(s) 375, 909, 919
BmsI GCATC 5 cut(s) 154, 368, 477, 719, 780
BoxI GACNNNNGTC 1 cut(s) 609
BpmI CTGGAG 2 cut(s) 500, 580
BpuEI CTTGAG 2 cut(s) 244, 524
BpuMI CCSGG 2 cut(s) 375, 919
BsaAI YACGTR 1 cut(s) 370
BsaBI GATNNNNATC 1 cut(s) 251
BsaHI GRCGYC 1 cut(s) 627
BsaJI CCNNGG 4 cut(s) 188, 261, 677, 746
BsaWI WCCGGW 2 cut(s) 383, 525
Bse118I RCCGGY 2 cut(s) 383, 525
Bse8I GATNNNNATC 1 cut(s) 251
BseBI CCWGG 1 cut(s) 909
BseDI CCNNGG 4 cut(s) 188, 261, 677, 746
BseGI GGATG 4 cut(s) 257, 383, 666, 734
BseJI GATNNNNATC 1 cut(s) 251
BseMII CTCAG 1 cut(s) 149
BseXI GCAGC 3 cut(s) 400, 604, 822
BsgI GTGCAG 2 cut(s) 709, 828
BshFI GGCC 3 cut(s) 76, 559, 709
BshNI GGYRCC 1 cut(s) 750
BshTI ACCGGT 2 cut(s) 383, 525
BsiSI CCGG 4 cut(s) 374, 384, 526, 918
BsmI GAATGC 1 cut(s) 741
BsnI GGCC 3 cut(s) 76, 559, 709
Bsp143I GATC 2 cut(s) 281, 551
Bsp19I CCATGG 1 cut(s) 188
BspACI CCGC 4 cut(s) 80, 141, 762, 765
BspANI GGCC 3 cut(s) 76, 559, 709
BspCNI CTCAG 1 cut(s) 150
BspHI TCATGA 1 cut(s) 456
BspLI GGNNCC 2 cut(s) 752, 913
BspPI GGATC 1 cut(s) 559
BspT107I GGYRCC 1 cut(s) 750
BsrFI RCCGGY 2 cut(s) 383, 525
BssAI RCCGGY 2 cut(s) 383, 525
BssECI CCNNGG 4 cut(s) 188, 261, 677, 746
BssMI GATC 2 cut(s) 281, 551
BssNI GRCGYC 1 cut(s) 627
BssSI CACGAG 2 cut(s) 83, 572
BssT1I CCWWGG 3 cut(s) 188, 261, 677
Bst2BI CACGAG 2 cut(s) 83, 572
Bst2UI CCWGG 1 cut(s) 909
Bst4CI ACNGT 7 cut(s) 22, 53, 302, 611, 674, 875, 902
Bst6I CTCTTC 2 cut(s) 567, 789
BstACI GRCGYC 1 cut(s) 627
BstAPI GCANNNNNTGC 2 cut(s) 729, 738
BstBAI YACGTR 1 cut(s) 370
BstC8I GCNNGC 2 cut(s) 833, 889
BstDEI CTNAG 1 cut(s) 158
BstDSI CCRYGG 1 cut(s) 188
BstF5I GGATG 4 cut(s) 257, 383, 666, 734
BstH2I RGCGCY 1 cut(s) 215
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 2 cut(s) 284, 554
BstMBI GATC 2 cut(s) 281, 551
BstMWI GCNNNNNNNGC 7 cut(s) 450, 645, 729, 738, 759, 768, 806
BstNI CCWGG 1 cut(s) 909
BstPAI GACNNNNGTC 1 cut(s) 609
BstSCI CCNGG 3 cut(s) 373, 907, 917
BstSNI TACGTA 1 cut(s) 370
BstV1I GCAGC 3 cut(s) 400, 604, 822
BstX2I RGATCY 1 cut(s) 281
BstYI RGATCY 1 cut(s) 281
BsuI GTATCC 1 cut(s) 890
BsuRI GGCC 3 cut(s) 76, 559, 709
BtgI CCRYGG 1 cut(s) 188
BtrI CACGTC 1 cut(s) 687
BtsCI GGATG 4 cut(s) 257, 383, 666, 734
BtsIMutI CAGTG 1 cut(s) 155
Cac8I GCNNGC 2 cut(s) 833, 889
CciI TCATGA 1 cut(s) 456
CfoI GCGC 1 cut(s) 214
Cfr10I RCCGGY 2 cut(s) 383, 525
Cfr13I GGNCC 1 cut(s) 74
CseI GACGC 1 cut(s) 442
Csp6I GTAC 2 cut(s) 371, 577
CspAI ACCGGT 2 cut(s) 383, 525
CviAII CATG 4 cut(s) 38, 189, 457, 478
CviQI GTAC 2 cut(s) 371, 577
DdeI CTNAG 1 cut(s) 158
DpnI GATC 2 cut(s) 283, 553
DpnII GATC 2 cut(s) 281, 551
Eam1104I CTCTTC 2 cut(s) 567, 789
EarI CTCTTC 2 cut(s) 567, 789
Eco105I TACGTA 1 cut(s) 370
Eco130I CCWWGG 3 cut(s) 188, 261, 677
EcoRII CCWGG 1 cut(s) 907
EcoT14I CCWWGG 3 cut(s) 188, 261, 677
ErhI CCWWGG 3 cut(s) 188, 261, 677
FaeI CATG 4 cut(s) 41, 192, 460, 481
FaiI YATR 7 cut(s) 39, 190, 458, 463, 479, 871, 942
FatI CATG 4 cut(s) 37, 188, 456, 477
FauI CCCGC 1 cut(s) 758
FblI GTMKAC 1 cut(s) 17
Fnu4HI GCNGC 4 cut(s) 414, 618, 763, 836
FokI GGATG 4 cut(s) 244, 390, 673, 741
Fsp4HI GCNGC 4 cut(s) 414, 618, 763, 836
GlaI GCGC 1 cut(s) 213
GluI GCNGC 4 cut(s) 414, 618, 763, 836
GsuI CTGGAG 2 cut(s) 500, 580
HaeII RGCGCY 1 cut(s) 215
HaeIII GGCC 3 cut(s) 76, 559, 709
HapII CCGG 4 cut(s) 374, 384, 526, 918
HgaI GACGC 1 cut(s) 442
HhaI GCGC 1 cut(s) 214
Hin1I GRCGYC 1 cut(s) 627
Hin1II CATG 4 cut(s) 41, 192, 460, 481
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HinfI GANTC 4 cut(s) 14, 346, 402, 506
HpaII CCGG 4 cut(s) 374, 384, 526, 918
Hpy166II GTNNAC 2 cut(s) 18, 172
Hpy188I TCNGA 6 cut(s) 13, 235, 246, 430, 747, 826
Hpy188III TCNNGA 5 cut(s) 57, 457, 517, 572, 597
Hpy8I GTNNAC 2 cut(s) 18, 172
Hpy99I CGWCG 3 cut(s) 401, 629, 653
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 7 cut(s) 22, 53, 302, 611, 674, 875, 902
HpyCH4IV ACGT 3 cut(s) 369, 627, 686
HpyF10VI GCNNNNNNNGC 7 cut(s) 450, 645, 729, 738, 759, 768, 806
HpyF3I CTNAG 1 cut(s) 158
HpySE526I ACGT 3 cut(s) 369, 627, 686
Hsp92I GRCGYC 1 cut(s) 627
Hsp92II CATG 4 cut(s) 41, 192, 460, 481
HspAI GCGC 1 cut(s) 212
Kzo9I GATC 2 cut(s) 281, 551
Lsp1109I GCAGC 3 cut(s) 400, 604, 822
LweI GCATC 5 cut(s) 154, 368, 477, 719, 780
MaeII ACGT 3 cut(s) 369, 627, 686
MaeIII GTNAC 3 cut(s) 528, 611, 851
MalI GATC 2 cut(s) 283, 553
MboI GATC 2 cut(s) 281, 551
MboII GAAGA 3 cut(s) 554, 797, 806
MfeI CAATTG 1 cut(s) 778
MflI RGATCY 1 cut(s) 281
MluCI AATT 1 cut(s) 778
MlyI GAGTC 3 cut(s) 23, 411, 515
MseI TTAA 2 cut(s) 389, 446
MspI CCGG 4 cut(s) 374, 384, 526, 918
MspR9I CCNGG 3 cut(s) 375, 909, 919
MunI CAATTG 1 cut(s) 778
Mva1269I GAATGC 1 cut(s) 741
MvaI CCWGG 1 cut(s) 909
MwoI GCNNNNNNNGC 7 cut(s) 450, 645, 729, 738, 759, 768, 806
NciI CCSGG 2 cut(s) 375, 919
NcoI CCATGG 1 cut(s) 188
NdeII GATC 2 cut(s) 281, 551
NlaIII CATG 4 cut(s) 41, 192, 460, 481
NlaIV GGNNCC 2 cut(s) 752, 913
NmuCI GTSAC 3 cut(s) 528, 611, 851
PagI TCATGA 1 cut(s) 456
PcsI WCGNNNNNNNCGW 2 cut(s) 506, 621
PctI GAATGC 1 cut(s) 741
PfeI GAWTC 1 cut(s) 346
PflFI GACNNNGTC 1 cut(s) 401
PinAI ACCGGT 2 cut(s) 383, 525
PkrI GCNGC 4 cut(s) 415, 619, 764, 837
PleI GAGTC 3 cut(s) 22, 410, 514
PpsI GAGTC 3 cut(s) 22, 410, 514
Ppu21I YACGTR 1 cut(s) 370
PshAI GACNNNNGTC 1 cut(s) 609
Psp6I CCWGG 1 cut(s) 907
PspGI CCWGG 1 cut(s) 907
PspN4I GGNNCC 2 cut(s) 752, 913
PspPI GGNCC 1 cut(s) 74
PsrI GAACNNNNNNTAC 2 cut(s) 473, 505
PsuI RGATCY 1 cut(s) 281
PsyI GACNNNGTC 1 cut(s) 401
RsaI GTAC 2 cut(s) 372, 578
RsaNI GTAC 2 cut(s) 371, 577
SaqAI TTAA 2 cut(s) 389, 446
SatI GCNGC 4 cut(s) 414, 618, 763, 836
Sau3AI GATC 2 cut(s) 281, 551
Sau96I GGNCC 1 cut(s) 74
SchI GAGTC 3 cut(s) 23, 411, 515
ScrFI CCNGG 3 cut(s) 375, 909, 919
SfaNI GCATC 5 cut(s) 154, 368, 477, 719, 780
SmlI CTYRAG 2 cut(s) 223, 503
SmoI CTYRAG 2 cut(s) 223, 503
SnaBI TACGTA 1 cut(s) 370
Sse9I AATT 1 cut(s) 778
SsiI CCGC 4 cut(s) 80, 141, 762, 765
SspI AATATT 1 cut(s) 310
StyD4I CCNGG 3 cut(s) 373, 907, 917
StyI CCWWGG 3 cut(s) 188, 261, 677
TaaI ACNGT 7 cut(s) 22, 53, 302, 611, 674, 875, 902
TaiI ACGT 3 cut(s) 372, 630, 689
TaqI TCGA 6 cut(s) 123, 409, 495, 624, 669, 774
TasI AATT 1 cut(s) 778
TatI WGTACW 1 cut(s) 576
TauI GCSGC 1 cut(s) 765
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 2 cut(s) 389, 446
Tru9I TTAA 2 cut(s) 389, 446
TscAI CASTG 1 cut(s) 162
TseFI GTSAC 3 cut(s) 528, 611, 851
TseI GCWGC 3 cut(s) 413, 617, 835
Tsp45I GTSAC 3 cut(s) 528, 611, 851
TspDTI ATGAA 6 cut(s) 54, 78, 263, 311, 494, 940
TspGWI ACGGA 2 cut(s) 414, 909
TspRI CASTG 1 cut(s) 162
Tth111I GACNNNGTC 1 cut(s) 401
XmiI GTMKAC 1 cut(s) 17
ZraI GACGTC 1 cut(s) 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.