FvH4_4g36490

Oxygen evolving enhancer protein 3 (PsbQ)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0009685
Physical Location & Seq
Reverse (-)
33411373 .. 33413463
2091 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g36490.t1

Sequence Viewer

Length: 387 bp
ATGACATACCCCTGTTTTCAAGAAGACCAACATCCAGGTCATGCTAAAATGGTGGATATGCAATCAAAGGGAGTTGGTTGTCGGATTAAGAAGTGTGCCTGTGAATTACTGTCGCTTGGGAGTGATCTGATGGACGATGCTTACTCATGGGACTTGATGGGAAGGGATATACGCCTCAAATCGATGTTCTTGTATTGTGATCTTAGTCAGTTGATCTCTAATGTCCCAAAGGATCAGAAGAAGGCCCTGACAGAAGTTGGCAACAAATTGTTTTCCTCCATTGAAGAGTTGGATCACGCAGTGAAAATTCATAGCATTCCACTGACACGAGACCGATACAACGAGGCTGGTGTCATTCTACAAGAGCTGCTGGTTCTCATGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 ko01100 map00195 map01100
Pfam Domains
Protein Families
PsbQ

Protein Analysis

129

Amino Acids

14.52

Weight (kDa)

5.75

Isoelectric Point (pI)

38.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbQ PF05757 23 - 128 5e-22 Oxygen evolving enhancer protein 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 240, 300
AcsI RAATTY 1 cut(s) 306
AdeI CACNNNGTG 1 cut(s) 301
AgsI TTSAA 2 cut(s) 20, 284
AjnI CCWGG 1 cut(s) 34
AluBI AGCT 1 cut(s) 367
AluI AGCT 1 cut(s) 367
Alw26I GTCTC 1 cut(s) 324
AlwI GGATC 2 cut(s) 240, 300
AoxI GGCC 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 367
ApoI RAATTY 1 cut(s) 306
AspS9I GGNCC 1 cut(s) 244
BauI CACGAG 1 cut(s) 327
BbsI GAAGAC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 354
BccI CCATC 2 cut(s) 124, 151
BciT130I CCWGG 1 cut(s) 36
BcoDI GTCTC 1 cut(s) 324
BisI GCNGC 1 cut(s) 368
BlsI GCNGC 1 cut(s) 369
Bme1390I CCNGG 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 244
BmrFI CCNGG 1 cut(s) 36
BmsI GCATC 1 cut(s) 127
BpiI GAAGAC 1 cut(s) 30
Bsa29I ATCGAT 1 cut(s) 182
BsaI GGTCTC 1 cut(s) 324
BseBI CCWGG 1 cut(s) 36
BseCI ATCGAT 1 cut(s) 182
BseGI GGATG 1 cut(s) 31
BseXI GCAGC 1 cut(s) 354
BshFI GGCC 1 cut(s) 245
BshVI ATCGAT 1 cut(s) 182
BslFI GGGAC 2 cut(s) 164, 209
BsmAI GTCTC 1 cut(s) 324
BsmFI GGGAC 2 cut(s) 164, 209
BsmI GAATGC 1 cut(s) 315
BsnI GGCC 1 cut(s) 245
Bso31I GGTCTC 1 cut(s) 324
Bsp143I GATC 5 cut(s) 124, 199, 213, 232, 292
BspANI GGCC 1 cut(s) 245
BspDI ATCGAT 1 cut(s) 182
BspPI GGATC 2 cut(s) 240, 300
BspTNI GGTCTC 1 cut(s) 324
BssMI GATC 5 cut(s) 124, 199, 213, 232, 292
BssSI CACGAG 1 cut(s) 327
Bst2BI CACGAG 1 cut(s) 327
Bst2UI CCWGG 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 111
Bst6I CTCTTC 1 cut(s) 279
BstDEI CTNAG 1 cut(s) 203
BstF5I GGATG 1 cut(s) 31
BstKTI GATC 5 cut(s) 127, 202, 216, 235, 295
BstMAI GTCTC 1 cut(s) 324
BstMBI GATC 5 cut(s) 124, 199, 213, 232, 292
BstNI CCWGG 1 cut(s) 36
BstSCI CCNGG 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 354
BstV2I GAAGAC 1 cut(s) 30
Bsu15I ATCGAT 1 cut(s) 182
BsuRI GGCC 1 cut(s) 245
BsuTUI ATCGAT 1 cut(s) 182
BtsCI GGATG 1 cut(s) 31
BtsI GCAGTG 1 cut(s) 306
BtsIMutI CAGTG 2 cut(s) 306, 320
Cfr13I GGNCC 1 cut(s) 244
ClaI ATCGAT 1 cut(s) 182
CviAII CATG 3 cut(s) 41, 147, 379
CviJI RGCY 3 cut(s) 245, 347, 367
CviKI_1 RGCY 3 cut(s) 245, 347, 367
DdeI CTNAG 1 cut(s) 203
DpnI GATC 5 cut(s) 126, 201, 215, 234, 294
DpnII GATC 5 cut(s) 124, 199, 213, 232, 292
DraIII CACNNNGTG 1 cut(s) 301
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco31I GGTCTC 1 cut(s) 324
EcoO109I RGGNCCY 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 34
FaeI CATG 3 cut(s) 44, 150, 382
FaiI YATR 7 cut(s) 7, 42, 59, 148, 170, 312, 380
FaqI GGGAC 2 cut(s) 164, 209
FatI CATG 3 cut(s) 40, 146, 378
Fnu4HI GCNGC 1 cut(s) 368
FokI GGATG 1 cut(s) 18
Fsp4HI GCNGC 1 cut(s) 368
GluI GCNGC 1 cut(s) 368
HaeIII GGCC 1 cut(s) 245
Hin1II CATG 3 cut(s) 44, 150, 382
Hpy188I TCNGA 3 cut(s) 84, 129, 237
Hpy188III TCNNGA 1 cut(s) 20
HpyAV CCTTC 2 cut(s) 156, 235
HpyCH4III ACNGT 1 cut(s) 111
HpyCH4V TGCA 1 cut(s) 61
HpyF3I CTNAG 1 cut(s) 203
Hsp92II CATG 3 cut(s) 44, 150, 382
Kzo9I GATC 5 cut(s) 124, 199, 213, 232, 292
LpnPI CCDG 7 cut(s) 21, 25, 48, 112, 260, 333, 356
Lsp1109I GCAGC 1 cut(s) 354
LweI GCATC 1 cut(s) 127
MalI GATC 5 cut(s) 126, 201, 215, 234, 294
MboI GATC 5 cut(s) 124, 199, 213, 232, 292
MboII GAAGA 3 cut(s) 35, 250, 296
MluCI AATT 3 cut(s) 104, 266, 306
MmeI TCCRAC 2 cut(s) 62, 270
MnlI CCTC 3 cut(s) 185, 286, 337
MseI TTAA 2 cut(s) 87, 385
MspR9I CCNGG 1 cut(s) 36
Mva1269I GAATGC 1 cut(s) 315
MvaI CCWGG 1 cut(s) 36
NdeII GATC 5 cut(s) 124, 199, 213, 232, 292
NlaIII CATG 3 cut(s) 44, 150, 382
PctI GAATGC 1 cut(s) 315
PkrI GCNGC 1 cut(s) 369
Psp6I CCWGG 1 cut(s) 34
PspGI CCWGG 1 cut(s) 34
PspPI GGNCC 1 cut(s) 244
SaqAI TTAA 2 cut(s) 87, 385
SatI GCNGC 1 cut(s) 368
Sau3AI GATC 5 cut(s) 124, 199, 213, 232, 292
Sau96I GGNCC 1 cut(s) 244
ScrFI CCNGG 1 cut(s) 36
SetI ASST 2 cut(s) 40, 369
SfaNI GCATC 1 cut(s) 127
Sse9I AATT 3 cut(s) 104, 266, 306
StyD4I CCNGG 1 cut(s) 34
TaaI ACNGT 1 cut(s) 111
TaqI TCGA 1 cut(s) 182
TaqII GACCGA 1 cut(s) 348
TasI AATT 3 cut(s) 104, 266, 306
Tru1I TTAA 2 cut(s) 87, 385
Tru9I TTAA 2 cut(s) 87, 385
TscAI CASTG 2 cut(s) 306, 327
TseI GCWGC 1 cut(s) 367
TspDTI ATGAA 1 cut(s) 299
TspRI CASTG 2 cut(s) 306, 327
XapI RAATTY 1 cut(s) 306
XcmI CCANNNNNNNNNTGG 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.