MD16G1006800.v1.1

Oxygen evolving enhancer protein 3 (PsbQ)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0009685
Physical Location & Seq
Forward (+)
525591 .. 527043
1453 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1006800.v1.1.491

Sequence Viewer

Length: 330 bp
ATGCAATTAAAGGGAAGTGCTTGCAGGATTAAGAAGTGTGCTTTCGATTTACTGTCAATCGGGAACGATCTGACGAATGACGATCACTCGTGGGAGTTGATGGGGAGGGATCTCCGCCTCAAATCGACGTTCTTGTACTGTGATCTTAATCAGATGATCTCTCGTTCACCAAGGGACCAGAAGAGAGCTCTCACTGAACTTGCCAACAAACTGTTTTGCTCCATTGAAGAGTTGGATCAGGCAGTGAAAATTCGAAGCCTGGCGCTGACCCAAGATCGATACAATGAGGCTGCTGTCATTTTACAGGAGGTGATGGCTCTTGCGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 ko01100 map00195 map01100
Pfam Domains
Protein Families
PsbQ

Protein Analysis

110

Amino Acids

12.42

Weight (kDa)

6.56

Isoelectric Point (pI)

47.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbQ PF05757 2 - 107 5e-25 Oxygen evolving enhancer protein 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 115
AclWI GGATC 2 cut(s) 117, 243
AcsI RAATTY 1 cut(s) 249
AfaI GTAC 1 cut(s) 137
AgsI TTSAA 1 cut(s) 227
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 1 cut(s) 188
AluI AGCT 1 cut(s) 188
Alw21I GWGCWC 1 cut(s) 190
AlwI GGATC 2 cut(s) 117, 243
ApeKI GCWGC 1 cut(s) 290
ApoI RAATTY 1 cut(s) 249
AspLEI GCGC 2 cut(s) 265, 325
AspS9I GGNCC 1 cut(s) 175
AsuHPI GGTGA 2 cut(s) 159, 322
AsuII TTCGAA 1 cut(s) 253
AvaII GGWCC 1 cut(s) 175
BanII GRGCYC 1 cut(s) 190
BauI CACGAG 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 190
BbvI GCAGC 1 cut(s) 277
BccI CCATC 2 cut(s) 94, 307
BciT130I CCWGG 1 cut(s) 260
BfoI RGCGCY 1 cut(s) 266
BisI GCNGC 1 cut(s) 291
BlsI GCNGC 1 cut(s) 292
Bme1390I CCNGG 1 cut(s) 260
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 176
BmrFI CCNGG 1 cut(s) 260
Bpu14I TTCGAA 1 cut(s) 253
Bsa29I ATCGAT 1 cut(s) 277
BsaBI GATNNNNATC 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 170
Bse8I GATNNNNATC 1 cut(s) 147
BseBI CCWGG 1 cut(s) 260
BseCI ATCGAT 1 cut(s) 277
BseDI CCNNGG 1 cut(s) 170
BseJI GATNNNNATC 1 cut(s) 147
BseXI GCAGC 1 cut(s) 277
BshVI ATCGAT 1 cut(s) 277
BsiHKAI GWGCWC 1 cut(s) 190
BslFI GGGAC 1 cut(s) 188
BsmFI GGGAC 1 cut(s) 188
Bsp119I TTCGAA 1 cut(s) 253
Bsp1286I GDGCHC 1 cut(s) 190
Bsp143I GATC 7 cut(s) 67, 82, 109, 142, 156, 235, 274
BspACI CCGC 1 cut(s) 115
BspDI ATCGAT 1 cut(s) 277
BspLI GGNNCC 1 cut(s) 176
BspPI GGATC 2 cut(s) 117, 243
BspT104I TTCGAA 1 cut(s) 253
BssECI CCNNGG 1 cut(s) 170
BssMI GATC 7 cut(s) 67, 82, 109, 142, 156, 235, 274
BssSI CACGAG 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 170
Bst2BI CACGAG 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 3 cut(s) 54, 140, 213
Bst6I CTCTTC 2 cut(s) 176, 222
BstBI TTCGAA 1 cut(s) 253
BstC8I GCNNGC 1 cut(s) 22
BstH2I RGCGCY 1 cut(s) 266
BstHHI GCGC 2 cut(s) 265, 325
BstKTI GATC 7 cut(s) 70, 85, 112, 145, 159, 238, 277
BstMBI GATC 7 cut(s) 67, 82, 109, 142, 156, 235, 274
BstNI CCWGG 1 cut(s) 260
BstSCI CCNGG 1 cut(s) 258
BstV1I GCAGC 1 cut(s) 277
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
Bsu15I ATCGAT 1 cut(s) 277
BsuTUI ATCGAT 1 cut(s) 277
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 2 cut(s) 192, 249
Cac8I GCNNGC 1 cut(s) 22
CfoI GCGC 2 cut(s) 265, 325
Cfr13I GGNCC 1 cut(s) 175
ClaI ATCGAT 1 cut(s) 277
Csp6I GTAC 1 cut(s) 136
CviJI RGCY 4 cut(s) 188, 258, 290, 317
CviKI_1 RGCY 4 cut(s) 188, 258, 290, 317
CviQI GTAC 1 cut(s) 136
DpnI GATC 7 cut(s) 69, 84, 111, 144, 158, 237, 276
DpnII GATC 7 cut(s) 67, 82, 109, 142, 156, 235, 274
Eam1104I CTCTTC 2 cut(s) 176, 222
EarI CTCTTC 2 cut(s) 176, 222
EciI GGCGGA 1 cut(s) 104
Ecl136II GAGCTC 1 cut(s) 188
Eco130I CCWWGG 1 cut(s) 170
Eco24I GRGCYC 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 175
Eco53kI GAGCTC 1 cut(s) 188
EcoICRI GAGCTC 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 170
EcoT38I GRGCYC 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 170
FaqI GGGAC 1 cut(s) 188
Fnu4HI GCNGC 1 cut(s) 291
FriOI GRGCYC 1 cut(s) 190
Fsp4HI GCNGC 1 cut(s) 291
GlaI GCGC 2 cut(s) 264, 324
GluI GCNGC 1 cut(s) 291
HaeII RGCGCY 1 cut(s) 266
HhaI GCGC 2 cut(s) 265, 325
Hin6I GCGC 2 cut(s) 263, 323
HinP1I GCGC 2 cut(s) 263, 323
HphI GGTGA 2 cut(s) 159, 322
Hpy166II GTNNAC 1 cut(s) 167
Hpy188I TCNGA 2 cut(s) 72, 153
Hpy188III TCNNGA 1 cut(s) 61
Hpy8I GTNNAC 1 cut(s) 167
Hpy99I CGWCG 1 cut(s) 130
HpyCH4III ACNGT 3 cut(s) 54, 140, 213
HpyCH4IV ACGT 1 cut(s) 128
HpyCH4V TGCA 2 cut(s) 4, 24
HpySE526I ACGT 1 cut(s) 128
HspAI GCGC 2 cut(s) 263, 323
Kzo9I GATC 7 cut(s) 67, 82, 109, 142, 156, 235, 274
LmnI GCTCC 1 cut(s) 224
LpnPI CCDG 6 cut(s) 10, 191, 224, 245, 272, 290
Lsp1109I GCAGC 1 cut(s) 277
MaeII ACGT 1 cut(s) 128
MalI GATC 7 cut(s) 69, 84, 111, 144, 158, 237, 276
MboI GATC 7 cut(s) 67, 82, 109, 142, 156, 235, 274
MboII GAAGA 2 cut(s) 193, 239
MflI RGATCY 1 cut(s) 109
MhlI GDGCHC 1 cut(s) 190
MluCI AATT 2 cut(s) 5, 249
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 4 cut(s) 99, 128, 280, 301
MseI TTAA 4 cut(s) 8, 30, 147, 328
MspR9I CCNGG 1 cut(s) 260
MvaI CCWGG 1 cut(s) 260
NdeII GATC 7 cut(s) 67, 82, 109, 142, 156, 235, 274
NlaIV GGNNCC 1 cut(s) 176
NspV TTCGAA 1 cut(s) 253
PkrI GCNGC 1 cut(s) 292
Psp124BI GAGCTC 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 258
PspGI CCWGG 1 cut(s) 258
PspN4I GGNNCC 1 cut(s) 176
PspPI GGNCC 1 cut(s) 175
PsuI RGATCY 1 cut(s) 109
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SacI GAGCTC 1 cut(s) 190
SaqAI TTAA 4 cut(s) 8, 30, 147, 328
SatI GCNGC 1 cut(s) 291
Sau3AI GATC 7 cut(s) 67, 82, 109, 142, 156, 235, 274
Sau96I GGNCC 1 cut(s) 175
ScrFI CCNGG 1 cut(s) 260
SduI GDGCHC 1 cut(s) 190
SetI ASST 3 cut(s) 131, 190, 312
SfuI TTCGAA 1 cut(s) 253
SinI GGWCC 1 cut(s) 175
Sse9I AATT 2 cut(s) 5, 249
SsiI CCGC 1 cut(s) 115
SstI GAGCTC 1 cut(s) 190
StyD4I CCNGG 1 cut(s) 258
StyI CCWWGG 1 cut(s) 170
TaaI ACNGT 3 cut(s) 54, 140, 213
TaiI ACGT 1 cut(s) 131
TaqI TCGA 4 cut(s) 45, 125, 253, 277
TasI AATT 2 cut(s) 5, 249
TatI WGTACW 1 cut(s) 135
Tru1I TTAA 4 cut(s) 8, 30, 147, 328
Tru9I TTAA 4 cut(s) 8, 30, 147, 328
TscAI CASTG 2 cut(s) 199, 249
TseI GCWGC 1 cut(s) 290
TspRI CASTG 2 cut(s) 199, 249
VpaK11BI GGWCC 1 cut(s) 175
XapI RAATTY 1 cut(s) 249
XcmI CCANNNNNNNNNTGG 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.