Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009685

Physical Location & Seq

Genomic Coordinates Reverse (-)

54041475 .. 54042396

Gene Structure 922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0369000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCCTTCAGAATTCCTCGATATCATCATCACCTACTAGTTTTGATCACCATTCTCTGCCTCTCCATCCTCATCTTCTTCTTCCTTCAATATGAATGCTACAACTCCAAGACAATCAATAGCATCCACACACAAATCTCTCATCACCGTCATCATCTTCATCGTCGTCGCCCTAATCTGGCCATGAGCAGAAAAGTTTTAGCAAGCAAGTTTGATTTCACCCCATTCGTACATCGCCGTCAGCAACACCGCCAAAGAAGACCTTCACCCGATCATCACACGGAGCCTGCAGCTAATTCCGATGAGAGTTCCAAGGAGATCGATCCACGTTACGGTGTCGAAAAGCGACGAGTCCCCACAGGTCCCAACCCATTGCACCATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbQ

Protein Analysis

128

Amino Acids

15.36

Weight (kDa)

10.87

Isoelectric Point (pI)

71.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36490 FvH4_4g36490
malus_domestica	MD13G1008800.v1.1 MD16G1006800.v1.1
prunus_persica	Prupe.1G343900_v2.0.a1 Prupe.1G343900_v2.0.a1 Prupe.1G343900_v2.0.a1 Prupe.1G343900_v2.0.a1 Prupe.1G343900_v2.0.a1
pyrus_communis	pycom13g00740 pycom16g00650
rosa_chinensis	RchiOBHm_Chr4g0446251
rosa_laevigata	RLG00000005677
rosa_multiflora	Rmu_sc0014728.1_g000005
rosa_roxburghii	Rroxscaffold_5G00386650
rosa_rugosa	Rorug04G0368900 Rorug04G0369000
rosa_samantha	Rh4AG431000 Rh4BG440400 Rh4CG457700 Rh4DG438900
rosa_wichuraiana	Rw4G036820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	250
AclWI	GGATC	1 cut(s)	317
AcoI	YGGCCR	1 cut(s)	180
AcsI	RAATTY	1 cut(s)	12
AfaI	GTAC	1 cut(s)	231
AfiI	CCNNNNNNNGG	2 cut(s)	178, 332
AgsI	TTSAA	1 cut(s)	89
AhlI	ACTAGT	1 cut(s)	37
AluBI	AGCT	1 cut(s)	293
AluI	AGCT	1 cut(s)	293
AlwI	GGATC	1 cut(s)	317
AoxI	GGCC	2 cut(s)	3, 180
ApeKI	GCWGC	1 cut(s)	290
ApoI	RAATTY	1 cut(s)	12
Asp700I	GAANNNNTTC	1 cut(s)	262
AspS9I	GGNCC	1 cut(s)	362
AsuHPI	GGTGA	5 cut(s)	23, 40, 137, 211, 258
AvaII	GGWCC	1 cut(s)	362
BalI	TGGCCA	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	265
BbvI	GCAGC	1 cut(s)	302
BccI	CCATC	1 cut(s)	74
BceAI	ACGGC	1 cut(s)	222
BclI	TGATCA	1 cut(s)	45
BcuI	ACTAGT	1 cut(s)	37
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	288
BisI	GCNGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	292
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	2 cut(s)	285, 364
BmsI	GCATC	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	265
Bsa29I	ATCGAT	2 cut(s)	321, 382
BsaJI	CCNNGG	1 cut(s)	312
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 332
Bse3DI	GCAATG	1 cut(s)	371
BseCI	ATCGAT	2 cut(s)	321, 382
BseDI	CCNNGG	1 cut(s)	312
BseGI	GGATG	2 cut(s)	66, 123
BseLI	CCNNNNNNNGG	2 cut(s)	178, 332
BseMI	GCAATG	1 cut(s)	371
BseXI	GCAGC	1 cut(s)	302
BshFI	GGCC	2 cut(s)	5, 182
BshVI	ATCGAT	2 cut(s)	321, 382
BslFI	GGGAC	2 cut(s)	338, 348
BslI	CCNNNNNNNGG	2 cut(s)	178, 332
BsmFI	GGGAC	2 cut(s)	338, 348
BsmI	GAATGC	1 cut(s)	101
BsnI	GGCC	2 cut(s)	5, 182
Bsp143I	GATC	4 cut(s)	45, 271, 318, 322
BspACI	CCGC	1 cut(s)	250
BspANI	GGCC	2 cut(s)	5, 182
BspDI	ATCGAT	2 cut(s)	321, 382
BspLI	GGNNCC	2 cut(s)	285, 364
BspMAI	CTGCAG	1 cut(s)	292
BspPI	GGATC	1 cut(s)	317
BsrDI	GCAATG	1 cut(s)	371
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	4 cut(s)	45, 271, 318, 322
BssT1I	CCWWGG	1 cut(s)	312
Bst4CI	ACNGT	2 cut(s)	149, 335
BstC8I	GCNNGC	2 cut(s)	205, 288
BstF5I	GGATG	2 cut(s)	66, 123
BstKTI	GATC	4 cut(s)	48, 274, 321, 325
BstMBI	GATC	4 cut(s)	45, 271, 318, 322
BstSFI	CTRYAG	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	302
BstV2I	GAAGAC	1 cut(s)	265
Bsu15I	ATCGAT	2 cut(s)	321, 382
BsuRI	GGCC	2 cut(s)	5, 182
BsuTUI	ATCGAT	2 cut(s)	321, 382
BtgZI	GCGATG	1 cut(s)	218
BtsCI	GGATG	2 cut(s)	66, 123
Cac8I	GCNNGC	2 cut(s)	205, 288
Cfr13I	GGNCC	1 cut(s)	362
ClaI	ATCGAT	2 cut(s)	321, 382
Csp6I	GTAC	1 cut(s)	230
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	4 cut(s)	5, 182, 286, 293
CviKI_1	RGCY	4 cut(s)	5, 182, 286, 293
CviQI	GTAC	1 cut(s)	230
DpnI	GATC	4 cut(s)	47, 273, 320, 324
DpnII	GATC	4 cut(s)	45, 271, 318, 322
EaeI	YGGCCR	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	312
Eco32I	GATATC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	362
EcoO109I	RGGNCCY	1 cut(s)	362
EcoRI	GAATTC	1 cut(s)	12
EcoRV	GATATC	1 cut(s)	23
EcoT14I	CCWWGG	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	1 cut(s)	187
FaiI	YATR	2 cut(s)	93, 185
FalI	AAGNNNNNCTT	2 cut(s)	247, 279
FaqI	GGGAC	2 cut(s)	338, 348
FatI	CATG	1 cut(s)	183
FbaI	TGATCA	1 cut(s)	45
Fnu4HI	GCNGC	1 cut(s)	291
FokI	GGATG	2 cut(s)	53, 110
Fsp4HI	GCNGC	1 cut(s)	291
FspBI	CTAG	1 cut(s)	38
GluI	GCNGC	1 cut(s)	291
HaeIII	GGCC	2 cut(s)	5, 182
Hin1II	CATG	1 cut(s)	187
HinfI	GANTC	1 cut(s)	351
HphI	GGTGA	5 cut(s)	23, 40, 137, 211, 258
Hpy188I	TCNGA	2 cut(s)	11, 301
Hpy99I	CGWCG	3 cut(s)	168, 171, 351
HpyAV	CCTTC	3 cut(s)	16, 95, 273
HpyCH4III	ACNGT	2 cut(s)	149, 335
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	2 cut(s)	290, 376
HpySE526I	ACGT	1 cut(s)	328
Hsp92II	CATG	1 cut(s)	187
Ksp22I	TGATCA	1 cut(s)	45
Kzo9I	GATC	4 cut(s)	45, 271, 318, 322
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	3 cut(s)	164, 300, 345
Lsp1109I	GCAGC	1 cut(s)	302
LweI	GCATC	1 cut(s)	132
MaeI	CTAG	1 cut(s)	38
MaeII	ACGT	1 cut(s)	328
MaeIII	GTNAC	1 cut(s)	329
MalI	GATC	4 cut(s)	47, 273, 320, 324
MboI	GATC	4 cut(s)	45, 271, 318, 322
MboII	GAAGA	5 cut(s)	67, 70, 73, 149, 270
MlsI	TGGCCA	1 cut(s)	182
MluCI	AATT	2 cut(s)	12, 295
MluNI	TGGCCA	1 cut(s)	182
MlyI	GAGTC	1 cut(s)	360
MnlI	CCTC	3 cut(s)	27, 71, 80
Mox20I	TGGCCA	1 cut(s)	182
MroXI	GAANNNNTTC	1 cut(s)	262
MscI	TGGCCA	1 cut(s)	182
Msp20I	TGGCCA	1 cut(s)	182
Mva1269I	GAATGC	1 cut(s)	101
NdeII	GATC	4 cut(s)	45, 271, 318, 322
NlaIII	CATG	1 cut(s)	187
NlaIV	GGNNCC	2 cut(s)	285, 364
PctI	GAATGC	1 cut(s)	101
PdmI	GAANNNNTTC	1 cut(s)	262
PkrI	GCNGC	1 cut(s)	292
PleI	GAGTC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	359
PpuMI	RGGWCCY	1 cut(s)	362
Psp5II	RGGWCCY	1 cut(s)	362
PspN4I	GGNNCC	2 cut(s)	285, 364
PspPI	GGNCC	1 cut(s)	362
PspPPI	RGGWCCY	1 cut(s)	362
PstI	CTGCAG	1 cut(s)	292
RsaI	GTAC	1 cut(s)	231
RsaNI	GTAC	1 cut(s)	230
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	4 cut(s)	45, 271, 318, 322
Sau96I	GGNCC	1 cut(s)	362
SchI	GAGTC	1 cut(s)	360
SetI	ASST	5 cut(s)	36, 265, 295, 331, 364
SfaNI	GCATC	1 cut(s)	132
SfcI	CTRYAG	1 cut(s)	288
SinI	GGWCC	1 cut(s)	362
SpeI	ACTAGT	1 cut(s)	37
Sse9I	AATT	2 cut(s)	12, 295
SsiI	CCGC	1 cut(s)	250
SspMI	CTAG	1 cut(s)	38
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	2 cut(s)	149, 335
TaiI	ACGT	1 cut(s)	331
TaqI	TCGA	4 cut(s)	19, 321, 339, 382
TasI	AATT	2 cut(s)	12, 295
TseI	GCWGC	1 cut(s)	290
TspDTI	ATGAA	2 cut(s)	108, 149
TspGWI	ACGGA	1 cut(s)	296
VpaK11BI	GGWCC	1 cut(s)	362
XapI	RAATTY	1 cut(s)	12
XmnI	GAANNNNTTC	1 cut(s)	262
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.