Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009685

Physical Location & Seq

Genomic Coordinates Reverse (-)

32232854 .. 32235033

Gene Structure 2180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G343900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGACACATCCTTGTTTTGAAGAAGACCGTCCAGGCCATGGTAAAATGGTGGATGTTCAGTTGAAGGGAAGTGCTTGTAGGATTAAGAAGTGTGCCTTGGAGTTGCTGTCGATTGGGAGCGATCTGATGAACGAGGGTCAGTCGTCGTGGGAGTTGTTGGGAAGGGATCTGCGCCTGAAATCCACATTCTTGTATTGTGATCTTAATCAGATGATCTCTTGTGCACCAAGGGAACAGAAGAGGGCCCTCACAGAACTTGCCAACAAATTGTTTTGCTCCATTGAAGAGTTGGATCATGCAATGAAAATTCGTAGCGTTCCTTTGACCCAAGATCGATACAATCAGGCTGCTGTCGTCTTACAGGAGGTGATGGCTCTCGCGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbQ

Protein Analysis

129

Amino Acids

14.44

Weight (kDa)

6.29

Isoelectric Point (pI)

48.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36490 FvH4_4g36490
malus_domestica	MD13G1008800.v1.1 MD16G1006800.v1.1
prunus_persica	Prupe.1G343900_v2.0.a1 Prupe.1G343900_v2.0.a1 Prupe.1G343900_v2.0.a1 Prupe.1G343900_v2.0.a1 Prupe.1G343900_v2.0.a1
pyrus_communis	pycom13g00740 pycom16g00650
rosa_chinensis	RchiOBHm_Chr4g0446251
rosa_laevigata	RLG00000005677
rosa_multiflora	Rmu_sc0014728.1_g000005
rosa_roxburghii	Rroxscaffold_5G00386650
rosa_rugosa	Rorug04G0368900 Rorug04G0369000
rosa_samantha	Rh4AG431000 Rh4BG440400 Rh4CG457700 Rh4DG438900
rosa_wichuraiana	Rw4G036820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	38
AccII	CGCG	1 cut(s)	380
AclWI	GGATC	2 cut(s)	174, 300
AcsI	RAATTY	1 cut(s)	306
AfiI	CCNNNNNNNGG	1 cut(s)	38
AgsI	TTSAA	3 cut(s)	20, 64, 284
AjnI	CCWGG	1 cut(s)	31
AjuI	GAANNNNNNNTTGG	2 cut(s)	80, 112
Alw21I	GWGCWC	1 cut(s)	226
Alw44I	GTGCAC	1 cut(s)	222
AlwI	GGATC	2 cut(s)	174, 300
AoxI	GGCC	2 cut(s)	34, 243
ApaI	GGGCCC	1 cut(s)	247
ApaLI	GTGCAC	1 cut(s)	222
ApeKI	GCWGC	1 cut(s)	347
ApoI	RAATTY	1 cut(s)	306
AspLEI	GCGC	2 cut(s)	174, 382
AspS9I	GGNCC	2 cut(s)	243, 244
AsuHPI	GGTGA	1 cut(s)	379
BaeGI	GKGCMC	2 cut(s)	226, 247
BanII	GRGCYC	1 cut(s)	247
BbsI	GAAGAC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	226
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	1 cut(s)	364
BciT130I	CCWGG	1 cut(s)	33
BisI	GCNGC	1 cut(s)	348
BlsI	GCNGC	1 cut(s)	349
Bme1390I	CCNGG	1 cut(s)	33
BmgT120I	GGNCC	2 cut(s)	243, 244
BmiI	GGNNCC	1 cut(s)	245
BmrFI	CCNGG	1 cut(s)	33
BpiI	GAAGAC	1 cut(s)	30
Bsa29I	ATCGAT	1 cut(s)	334
BsaBI	GATNNNNATC	1 cut(s)	204
BsaJI	CCNNGG	3 cut(s)	37, 96, 227
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse3DI	GCAATG	1 cut(s)	306
Bse8I	GATNNNNATC	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	33
BseCI	ATCGAT	1 cut(s)	334
BseDI	CCNNGG	3 cut(s)	37, 96, 227
BseGI	GGATG	2 cut(s)	7, 58
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMI	GCAATG	1 cut(s)	306
BseSI	GKGCMC	2 cut(s)	226, 247
BseXI	GCAGC	1 cut(s)	334
Bsh1236I	CGCG	1 cut(s)	380
BshFI	GGCC	2 cut(s)	36, 245
BshVI	ATCGAT	1 cut(s)	334
BsiHKAI	GWGCWC	1 cut(s)	226
BslI	CCNNNNNNNGG	1 cut(s)	38
BsnI	GGCC	2 cut(s)	36, 245
Bsp120I	GGGCCC	1 cut(s)	243
Bsp1286I	GDGCHC	2 cut(s)	226, 247
Bsp143I	GATC	6 cut(s)	121, 166, 199, 213, 292, 331
Bsp19I	CCATGG	1 cut(s)	37
BspANI	GGCC	2 cut(s)	36, 245
BspDI	ATCGAT	1 cut(s)	334
BspFNI	CGCG	1 cut(s)	380
BspLI	GGNNCC	1 cut(s)	245
BspPI	GGATC	2 cut(s)	174, 300
BsrDI	GCAATG	1 cut(s)	306
BssECI	CCNNGG	3 cut(s)	37, 96, 227
BssMI	GATC	6 cut(s)	121, 166, 199, 213, 292, 331
BssT1I	CCWWGG	3 cut(s)	37, 96, 227
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	1 cut(s)	29
Bst6I	CTCTTC	2 cut(s)	233, 279
BstDSI	CCRYGG	1 cut(s)	37
BstF5I	GGATG	2 cut(s)	7, 58
BstFNI	CGCG	1 cut(s)	380
BstHHI	GCGC	2 cut(s)	174, 382
BstKTI	GATC	6 cut(s)	124, 169, 202, 216, 295, 334
BstMBI	GATC	6 cut(s)	121, 166, 199, 213, 292, 331
BstNI	CCWGG	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	31
BstSLI	GKGCMC	2 cut(s)	226, 247
BstUI	CGCG	1 cut(s)	380
BstV1I	GCAGC	1 cut(s)	334
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
Bsu15I	ATCGAT	1 cut(s)	334
BsuRI	GGCC	2 cut(s)	36, 245
BsuTUI	ATCGAT	1 cut(s)	334
BtgI	CCRYGG	1 cut(s)	37
BtsCI	GGATG	2 cut(s)	7, 58
CfoI	GCGC	2 cut(s)	174, 382
Cfr13I	GGNCC	2 cut(s)	243, 244
ClaI	ATCGAT	1 cut(s)	334
CviAII	CATG	2 cut(s)	38, 296
CviJI	RGCY	4 cut(s)	36, 245, 347, 374
CviKI_1	RGCY	4 cut(s)	36, 245, 347, 374
DpnI	GATC	6 cut(s)	123, 168, 201, 215, 294, 333
DpnII	GATC	6 cut(s)	121, 166, 199, 213, 292, 331
Eam1104I	CTCTTC	2 cut(s)	233, 279
EarI	CTCTTC	2 cut(s)	233, 279
Eco130I	CCWWGG	3 cut(s)	37, 96, 227
Eco24I	GRGCYC	1 cut(s)	247
EcoO109I	RGGNCCY	2 cut(s)	243, 244
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	3 cut(s)	37, 96, 227
EcoT38I	GRGCYC	1 cut(s)	247
ErhI	CCWWGG	3 cut(s)	37, 96, 227
FaeI	CATG	2 cut(s)	41, 299
FaiI	YATR	2 cut(s)	39, 297
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FatI	CATG	2 cut(s)	37, 295
Fnu4HI	GCNGC	1 cut(s)	348
FokI	GGATG	1 cut(s)	65
FriOI	GRGCYC	1 cut(s)	247
Fsp4HI	GCNGC	1 cut(s)	348
GlaI	GCGC	2 cut(s)	173, 381
GluI	GCNGC	1 cut(s)	348
HaeIII	GGCC	2 cut(s)	36, 245
HhaI	GCGC	2 cut(s)	174, 382
Hin1II	CATG	2 cut(s)	41, 299
Hin6I	GCGC	2 cut(s)	172, 380
HinP1I	GCGC	2 cut(s)	172, 380
HphI	GGTGA	1 cut(s)	379
Hpy166II	GTNNAC	1 cut(s)	224
Hpy188I	TCNGA	2 cut(s)	126, 210
Hpy8I	GTNNAC	1 cut(s)	224
Hpy99I	CGWCG	1 cut(s)	148
HpyAV	CCTTC	2 cut(s)	58, 156
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4V	TGCA	2 cut(s)	224, 299
Hsp92II	CATG	2 cut(s)	41, 299
HspAI	GCGC	2 cut(s)	172, 380
Kzo9I	GATC	6 cut(s)	121, 166, 199, 213, 292, 331
LmnI	GCTCC	2 cut(s)	117, 281
LpnPI	CCDG	5 cut(s)	18, 45, 188, 329, 347
Lsp1109I	GCAGC	1 cut(s)	334
MalI	GATC	6 cut(s)	123, 168, 201, 215, 294, 333
MboI	GATC	6 cut(s)	121, 166, 199, 213, 292, 331
MboII	GAAGA	4 cut(s)	32, 35, 250, 296
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	2 cut(s)	226, 247
MluCI	AATT	2 cut(s)	266, 306
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	4 cut(s)	127, 234, 257, 358
MseI	TTAA	3 cut(s)	84, 204, 385
MspR9I	CCNGG	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	33
MvnI	CGCG	1 cut(s)	380
NcoI	CCATGG	1 cut(s)	37
NdeII	GATC	6 cut(s)	121, 166, 199, 213, 292, 331
NlaIII	CATG	2 cut(s)	41, 299
NlaIV	GGNNCC	1 cut(s)	245
PflMI	CCANNNNNTGG	1 cut(s)	38
PkrI	GCNGC	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	1 cut(s)	245
PspOMI	GGGCCC	1 cut(s)	243
PspPI	GGNCC	2 cut(s)	243, 244
PsuI	RGATCY	1 cut(s)	166
SaqAI	TTAA	3 cut(s)	84, 204, 385
SatI	GCNGC	1 cut(s)	348
Sau3AI	GATC	6 cut(s)	121, 166, 199, 213, 292, 331
Sau96I	GGNCC	2 cut(s)	243, 244
ScrFI	CCNGG	1 cut(s)	33
SduI	GDGCHC	2 cut(s)	226, 247
SetI	ASST	1 cut(s)	369
Sse9I	AATT	2 cut(s)	266, 306
StyD4I	CCNGG	1 cut(s)	31
StyI	CCWWGG	3 cut(s)	37, 96, 227
TaaI	ACNGT	1 cut(s)	29
TaqI	TCGA	2 cut(s)	110, 334
TasI	AATT	2 cut(s)	266, 306
Tru1I	TTAA	3 cut(s)	84, 204, 385
Tru9I	TTAA	3 cut(s)	84, 204, 385
TseI	GCWGC	1 cut(s)	347
TspDTI	ATGAA	2 cut(s)	143, 317
Van91I	CCANNNNNTGG	1 cut(s)	38
VneI	GTGCAC	1 cut(s)	222
XapI	RAATTY	1 cut(s)	306
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.